BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487629

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07960.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   743    0.0  


> AT5G07960.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); 
Has 193 Blast hits to 193 proteins in 75 species: 
Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants 
- 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 
| chr5:2542246-2543459 FORWARD LENGTH=634
Length=634

 Score =  743 bits (402),  Expect = 0.0
 Identities = 528/584 (90%), Gaps = 27/584 (5%)
 Strand=Plus/Plus

Query  1    ATAGAATCTCTAAGAACAATTTACAGTAGATCAG--AGAT-TTTACC-ATCGGAGCTTTa  56
            |||||||||||||||| || ||||||||||||||  | || |||||| |||||||||| |
Sbjct  20   ATAGAATCTCTAAGAAGAA-TTACAGTAGATCAGATATATATTTACCAATCGGAGCTTCA  78

Query  57   gagagat--acagagagaga--gagGATGTCTCACAGTCACGGAAACGCTTCGTCGGCGA  112
            |||||||  | |||||||||  ||||||||||||||||||||| ||||||||||||| ||
Sbjct  79   GAGAGATCCAAAGAGAGAGATTGAGGATGTCTCACAGTCACGGGAACGCTTCGTCGGTGA  138

Query  113  ACGATCCACGGCTGCCTTCGGCGGCGAAA-CCTTACACTCCACGGCCTGTAGCGCCGGAG  171
            |||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct  139  ACGATCCACGGCAGCCTTCGGCGGC-AAAGCCTTACATTCCACGGCCTGTAGCGCCGGAG  197

Query  172  GATCTTCCCGTTGACTACTCCGGATTTATCGCCGTTATCCTCGGCGTCTCCGGCGTTATG  231
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  198  GATCTTCCCGTTGACTACTCCGGATTCATCGCCGTTATCCTCGGCGTCTCCGGCGTTATG  257

Query  232  TTCAGGTACAAGATATGCTCGTGGCTTGCAATTATATTCTGTGCACAATCTCTCGCCAAC  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  258  TTCAGGTACAAGATATGCTCGTGGCTTGCAATTATATTCTGTGCACAATCTCTGGCCAAC  317

Query  292  ATGAGGAACTTGGAAAATGATTTAAAGCAGATCTCCATGGCTATGATGTTTGCTATAATG  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  ATGAGGAACTTGGAAAATGATTTAAAGCAGATCTCCATGGCTATGATGTTTGCTATAATG  377

Query  352  GGATTGGTTACAAACTACTTAGGGCCTAATAGACCCGCGACGAAGAAATGATCCTCAAGT  411
            ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||
Sbjct  378  GGATTGGTTACAAACTACTTAGGGCCTAACAGACCCGCGACAAAGAAATAATCCTCATGT  437

Query  412  CT-AAGAGGGTAACCAAATACTCTGCTCGTCTTTT-ATCAACCTTGTTTGGTTCTTCTTT  469
            || |||||  ||   |  | || |  |  | |||| || |||||||| ||| |||| |||
Sbjct  438  CTTAAGAG--TAGT-A--TGCT-T--T--T-TTTTGATAAACCTTGTATGGCTCTTGTTT  486

Query  470  CCGCACCAGAGATTGTTAGTGATTTATTTTTGTGTTT-CGACTCTCTAATC-T-GAGTAA  526
            ||||||||||||||| ||||| ||| | ||||||||| ||||||||||||| | ||||| 
Sbjct  487  CCGCACCAGAGATTGCTAGTGGTTTGTCTTTGTGTTTTCGACTCTCTAATCCTTGAGTAG  546

Query  527  CAAACTAGAACCCTGAGCTCTTGTTCATTTGTGGAGTTCTAAGA  570
            |||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct  547  CAAACTAGAACCTTGAGCTCTTGCTCATTTGTGGAGTTCAAAGA  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5