BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487638
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1212 0.0
> AT5G08060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 16 growth stages; Has 42 Blast hits
to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:2580449-2582564 FORWARD
LENGTH=957
Length=957
Score = 1212 bits (656), Expect = 0.0
Identities = 781/839 (93%), Gaps = 18/839 (2%)
Strand=Plus/Plus
Query 1 AAGTGTTTAACCAATCCAATATCTGAGACCGGTTTAATAGTCCTTCCCCTTTCGATTCGA 60
|||| || |||||||||||||| |||||||||||||||| ||||| | |||||||||||
Sbjct 37 AAGTATTGAACCAATCCAATATATGAGACCGGTTTAATAATCCTT-CGATTTCGATTCGA 95
Query 61 AGTTTTGGTTTCATCTCCTTTGCCCAAATCGAAGCGAAAGTCTCTCATCAATGGCGAAAT 120
| ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||
Sbjct 96 A-CTTTGGTTTCATCT-C----CCCAAATCGAAGCGAAGGTCTCTCAACAATGGCGAAAT 149
Query 121 CAGTGTCGACGGCGGCTTCCTCGCTTGTGCAAAACCTTAGGCGGTACATCAAGAAGCCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CAGTGTCGACGGCGGCTTCCTCGCTTGTGCAAAACCTTAGGCGGTACATCAAGAAGCCAT 209
Query 181 GGCAGATCACCGGACCTTGCGCTCACCCGGAATACCTCGAAGCTGTTCCCAAGGCGACGG 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 210 GGCAGATCACCGGACCTTGCGCTCACCCAGAATACCTCGAAGCTGTTCCAAAGGCGACGG 269
Query 241 AGTATCGTCTCCGATGCCCCGCTACGATTGATGAAGAGGCGATCGTGCCCTGCTCGGATC 300
||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||
Sbjct 270 AGTATCGTCTCCGATGCCCCGCTACGATTGATGAAGAAGCAATCGTGCCTTCCTCGGATC 329
Query 301 CAGATACCGTATACAACATCGTATACCACGGCAGAGATCAGCGCAGAAACCGCCCACCGA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CAGAGACCGTATACAACATCGTATACCACGGCAGAGATCAGCGCAGAAACCGCCCACCGA 389
Query 361 TCCGGCGATACATATTGAAGAAGGACAACGTGGTTCAGATGATGAATGAGAAGAAGACTT 420
||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 390 TCCGGCGATACGTATTGACGAAGGACAACGTGGTTCAGATGATGAACGAGAAGAAGAGTT 449
Query 421 TCGATGTCTCGGACTTCCCTAAGGTTTACTTGACTACCACAGTCGAGGAGGATTTGGACA 480
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 450 TTGACGTCTCGGACTTCCCTAAGGTTTACTTGACCACCACAGTCGAGGAGGATTTGGATA 509
Query 481 CGCGTGGTGGAGGCTACCAGAAATAAACAGGGTTTTTGCTCATCTCGTCTTTCTCCTGTA 540
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||
Sbjct 510 CGCGTGGTGGAGGCTACGAGAAATAATCAGGTTTTTTGCTCATCTCGTCTTTCTCTTGTA 569
Query 541 ACCTACCGATGGGCGAAAGACTGCGCGTGACATATCTCTAGCGACaaaaaaaTCTCTCCC 600
|| ||| |||||| |||||||||||||||||| ||||||| |||||||||| | ||||||
Sbjct 570 ACGTACTGATGGGGGAAAGACTGCGCGTGACACATCTCTACCGACAAAAAA-TATCTCCC 628
Query 601 TTGTTTGATTTATTCAATAAGATATCTAGTAGCTTTATGAACTACAAAACACTTCATTTT 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TTGTTTGATT-ATTCAATAAGATATCTAGTAGCTTTATGAACTACAAAACACTTCATTTT 687
Query 661 CCTTCACAAGAACCAGATTGTTGTTCAGTTGTATTCCCTATGTTTATGATGAACCCGTGA 720
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 688 CCTTCACAAGAAACAGATTGTTGTTCAGTTGTATTCCCTATCTTTATGATGAACCCGTGA 747
Query 721 T--TG-TT-T--CAAGTCTGACTGATTTAGAAATGGATAATAATGTAATACAAAGAGAGA 774
| || || | ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 748 TCGTGATTGTTTCAAGTCTGAGTGATTTAGAAATGGTTAATAATGTAATACAAAGAGAGA 807
Query 775 AACAGTTAGTAGT---CTCTGTGTTCTTGGGGACCCTTTCTTCTCTGCATCAGTGACTA 830
| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 808 ACCAGTTAGTAGTAGTCTCTGTGTTCTTGGGGACCCTTTCTTCTCTCCATCAGTGACTA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42849727391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5