BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487639
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08070.1 | Symbols: TCP17 | TCP domain protein 17 | chr5:258... 1171 0.0
> AT5G08070.1 | Symbols: TCP17 | TCP domain protein 17 | chr5:2584885-2585613
FORWARD LENGTH=729
Length=729
Score = 1171 bits (634), Expect = 0.0
Identities = 698/729 (96%), Gaps = 3/729 (0%)
Strand=Plus/Plus
Query 1 ATGGGAATAAAACAAGAAGATCAGAAGAGTTCTTTGTCATTGTTGAAGCAACGATGGAAT 60
|||||||||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||
Sbjct 1 ATGGGAATAAAAAAAGAAGATCAGAAAAGTTCCTTGTCCTTGTTGACGCAACGATGGAAT 60
Query 61 AATCCGAGGATCGTGCGAGTCTCCCGAGCATTCGGAGGCAAAGACAGACACAGCAAAGTG 120
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 AATCCGAGGATCGTGCGAGTCTCCCGAGCATTTGGAGGCAAAGATAGACACAGCAAAGTG 120
Query 121 TGCACAGTTCGTGGTCTCCGAGACAGGAGGATAAGGTTGTCGGTGATGACAGCGATTCAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TGCACAGTTCGTGGTCTCCGAGACAGGAGGATAAGGTTGTCGGTGATGACAGCGATCCAA 180
Query 181 CTCTACGACCTTCAAGAACGTTTAGGGCTGAGTCAGCCTAGCAAAGTCATTGATTGGCTC 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCTACGACCTTCAAGAACGATTAGGGCTGAGTCAGCCTAGCAAAGTCATTGATTGGCTC 240
Query 241 TTAGAAGTTGCCAAAAACGACGTCGATTTGCTTCCTCCTTTGCAATTCCCACCTGGGTTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TTAGAAGTTGCCAAAAACGACGTCGATTTGCTTCCTCCTTTGCAATTCCCACCTGGTTTT 300
Query 301 CGCCAACTTAACCCTAATCTCACCGGCCTTGGAGAATCTTTTCCCGGGGTCTTCGATCTT 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACCAACTTAACCCTAATCTCACCGGCCTTGGAGAATCTTTTCCCGGGGTCTTCGATCTT 360
Query 361 GGAAGAACCCAGAGAGAAACTTTGGATCTTGAGAAAAGTAAATGGGTTAATCTTGATCAT 420
|||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GGAAGAACACAGAGAGAAGCTTTGGATCTTGAGAAAAGGAAATGGGTTAATCTTGATCAT 420
Query 421 GGGTTTGATCACAGCGATGAT--C-TCCATTTCTCGAATTCAATCCAGAGCAACAAGCTT 477
| ||||||||||| |||| || | ||||||||||||||||||||||||||||||||||
Sbjct 421 GTGTTTGATCACATCGATCATCACAACCATTTCTCGAATTCAATCCAGAGCAACAAGCTT 480
Query 478 TCTTTCCCTTCTACTACTTCGTCTAGTAGCTCTTATCACTACAACCTTGGACATCTCCAA 537
| ||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 TATTTCCCTACAATTACTTCGTCTAGCAGCTCTTATCACTACAACCTTGGACATCTCCAA 540
Query 538 CAGTCACTACTAGACCAATCTGGTAACGTCACTGTTGCATTTTCCAATAACTATAATAAT 597
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 541 CAGTCACTACTAGACCAATCTGGTAACGTCACTGTCGCATTTTCTAATAACTATAATAAT 600
Query 598 AATAATCTCAATCCTCCGGAGGCGGAAACTATGAGTTCTCTATTCCCAACAAGGTACCCT 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATAATCTCAATCCTCCGGCGGCGGAAACTATGAGTTCTCTATTCCCAACAAGGTACCCT 660
Query 658 TCGTTTCTCGGTGGTGGTCAACTTCAACTCTTTAGTAGCACAAGCTCACAGCCAGACCAT 717
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 TCGTTTCTCGGTGGTGGTCAACTTCAACTCTTTAGTAGCACAAGCTCACAACCAGACCAT 720
Query 718 ATCGAGTAG 726
|||||||||
Sbjct 721 ATCGAGTAG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5