BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487645
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08120.1 | Symbols: MPB2C | movement protein binding protein... 1899 0.0
> AT5G08120.1 | Symbols: MPB2C | movement protein binding protein
2C | chr5:2600474-2602927 REVERSE LENGTH=1499
Length=1499
Score = 1899 bits (1028), Expect = 0.0
Identities = 1215/1299 (94%), Gaps = 37/1299 (3%)
Strand=Plus/Plus
Query 1 TAGTTTCAGATGAACGTTGGAGATTGAGATCCAAAGCTCAGACT-----CGAAGAATG-A 54
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 67 TAGTTTCAGATGAACGTTGGAGATTGAGATCCAAAGCTCAGACTCGGAACGAAGAATGAA 126
Query 55 ACGAATTTTTTAAAAGAAAAT---AA--AA----------TC--C-AAAGCTCTCTC--C 94
||||||||||| ||||||||| || || || | | ||||||| |
Sbjct 127 ACGAATTTTTTTAAAGAAAATAAAAATCAAGTCTTTCTCTTCGTCTATCTCTCTCTCTGC 186
Query 95 TCAGACTCTCTGGTGTTGAAGACCAATCACTGAAGCAGATCTATTATACGGAGGAAAGGT 154
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 187 TCAGACTCTCTGGTGTTGAAGACTAATCACTGAAGCAGATCTATTATACGGAGG-ACGAA 245
Query 155 GAAGATGTATGAGCAACAGCAACATTTCATGGATTTGCAAAGCGATTCTGGGTTTGGGGA 214
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAAGATGTATGAGCAGCAGCAACATTTCATGGATTTGCAAAGCGATTCTGGGTTTGGGGA 305
Query 215 TGATAGCTCCTGGCTCGCCGGCGATGACGATCTTCGACTCTCTCCTCACCAATCCGCCGC 274
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 306 CGATAGCTCCTGGCTCGCCGGCGATGACGATCTTCGTCTCTCTCCTCACCAATCTGCCGC 365
Query 275 CGGTACGAACTCCGGCAATGAGAATCTAGATCGTCGTCTTTTAAAAGATCTCGTTGAGAT 334
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 366 CGGTACGAACTCCGGCAATGAGAATCTAGATCGTCGTCTCTTAAAAGATCTCGTCGAGAT 425
Query 335 GGTTCCCCTTATCGAGCATTACATGGAACACAAAGAAAGGAGTTCGTTTAAGCGGCGTGG 394
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 426 GGTTCCCCTTATCGAGCATTACATGGAACATAAAGAAAGGAGTTCGTTTAAGCGGCGTGG 485
Query 395 TTCCATGATCTACACTAAGATGCCTTCTAAAGAATCCTTGTCCAGAAGGGGAAGAAATGC 454
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 486 TTCCATGATCTACACTAAGATGCCTTCAAAAGAATCCTTGTCCCGAAGGGGAAGAAATGC 545
Query 455 TTCTCAAACAGCCCCAGGAAGAAAAAAGAGAGACCAAGAGGGCAATGATGATGTTATGAA 514
||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 546 TTCTCAAACAGTCCCAGGAAGAAAGAAGAGAGACCAAGAGGGAAATGACGATGTTATGAA 605
Query 515 CAATTCTAGGGAAGATGGTGAAAACGCAACGGCTTTGTCTGGTGCTGAAAAGGAAGAACT 574
||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||| |
Sbjct 606 CAATTCTAGGGAAGATGATGAAAACGCAAAGGCTTTGGCTGGTGCAGAAAAGGAAGAAAT 665
Query 575 GAGTAGACTAAGAGAACAAGTGAATGACTTGCAGACAAAATTATTC-GAGAAAGAAGAGG 633
||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 666 GAGTAGACTAAGAGAGCAAGTGAATGACTTGCAGACAAAATTA-TCGGAGAAAGAAGAGG 724
Query 634 TTTTAAAGTCAATGGAGATGTCAAAGAATCAGGTAAACGAGATACAAGAAAAGCTTGAAG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTTTAAAGTCAATGGAGATGTCAAAGAATCAGGTAAACGAGATACAAGAAAAGCTTGAAG 784
Query 694 CAACAAATCGATTGGTTGCTGAGAAGGAGATGTTGATCAAGTCTATGCAGTTACAATTAT 753
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 785 CAACAAATCGATTGGTTGCTGAGAAGGATATGTTGATCAAGTCTATGCAGTTACAATTAT 844
Query 754 CGGACACAAAGATCAAACTTGCAGACAAGCAAGCTGCCCTTGAGAAGACTCAATGGGAAG 813
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 845 CGGACACAAAGATCAAACTTGCTGACAAGCAAGCAGCCCTTGAGAAGACTCAATGGGAAG 904
Query 814 CAAAGACAACAGGAACAAGAGCAATCAAGCTTCAAGAACAGCTAGATGCTGTTGAAGGAG 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CAAAGACAACAGGAACAAGAGCAATCAAGCTTCAAGAACAGCTAGATGCTGTTGAAGGAG 964
Query 874 ACATCTCTACGTTCACACGGGTGTTCGAAACTTTGGCGAAAACTGATTCCAAGAAACCCG 933
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 965 ACATCTCTACATTCACACGGGTGTTCGAAACTTTGGCAAAAACTGATTCCAAGAAACCCG 1024
Query 934 ATAGGGATTATGATGCAACCCCATATGAATTTGATCATCTTCCATATCTT-GACGATGTA 992
||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 1025 ATAGGGATTATGATGCAGTCCCATATGAATTTGATCATCTTCCATAT-TTAGACGATGTA 1083
Query 993 GATGAAACAGACCTGAGGAAAATTGAAGAAGCAAGATTAGCTTATGTTGCAGCAGTGACT 1052
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 1084 GATGAAACTGACCTGAGGAAAATGGAAGAAGCAAGATTAGCTTATGTAGCAGCAGTGAAT 1143
Query 1053 ACCGCAAAGGAACGAGAAGATGAAGAATCTCTGGCCATGGCTGCTCAAGCTCGAGCCTAC 1112
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1144 ACCGCAAAGGAACGAGAAGATGAAGAATCTCTGGTCATGGCTGCTCAAGCTCGAGCTTAC 1203
Query 1113 CTGCAATCCCTAGCCTTTACATAATAATCACCTTCAGGTACTT--T-CTT-ATAGGATAT 1168
|||||||| |||||||||||||| |||||| |||||||||||| | ||| |||||||||
Sbjct 1204 CTGCAATCACTAGCCTTTACATATTAATCATCTTCAGGTACTTACTTCTTTATAGGATAT 1263
Query 1169 TTCTCTCCTTGGTTTGTTTTAGGAGTATGTAGATTTCGTACCATGAAAAAATTGGAGAAG 1228
|||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1264 TTCTCTCCTTGGGTTGTTTTAGGAGTATGTAGATTT-GTACCATGAAGAAATTGGAGAAG 1322
Query 1229 AAAAGCTTGTGTGAGAAACATAAAGTTTTGGTTT-CCCC 1266
|||||||| |||||||||||||||||| |||||| ||||
Sbjct 1323 AAAAGCTTATGTGAGAAACATAAAGTTATGGTTTTCCCC 1361
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1267 GAGTTTTTGTTTCTTCATTTGAGCATGTATCTAT 1300
|||||||||||||||||||||||||||||| |||
Sbjct 1383 GAGTTTTTGTTTCTTCATTTGAGCATGTATGTAT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63955494330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5