BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487648

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08141.1 | Symbols: AtbZIP75, bZIP75 | basic leucine-zipper ...   209    9e-54


> AT5G08141.1 | Symbols: AtbZIP75, bZIP75 | basic leucine-zipper 
75 | chr5:2619142-2619555 FORWARD LENGTH=414
Length=414

 Score =  209 bits (113),  Expect = 9e-54
 Identities = 136/147 (93%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  4    TACCGTCATCAACAACC-ATTTGTTGTGACGGATCAAGAGAAGAGGTTAAGGAGACTGGC  62
            |||| |||||||||||| |  ||||||||||||| |||||||||||||||||||| ||||
Sbjct  70   TACCATCATCAACAACCGA-ATGTTGTGACGGATGAAGAGAAGAGGTTAAGGAGAATGGC  128

Query  63   GACTAATCGAGAATCAGCAAGAAGATCGCGGATGCGTGAGAGGATGATGAAAGAAGTGTT  122
            | ||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||
Sbjct  129  GTCTAATCGAGAATCAGCAAGAAGAACGCGGATGCGTGAGCGGATGATGAAAGAGGGGTT  188

Query  123  GCAAATGCAAGTAAAACAACTCATGGC  149
            |||||||||||||||||||||||||||
Sbjct  189  GCAAATGCAAGTAAAACAACTCATGGC  215


 Score =  209 bits (113),  Expect = 9e-54
 Identities = 123/128 (96%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  150  CTTGTTGGAGTACAATCACCAGATCTTGCAAGAGAATTCACAGCTCAAAGAGACAGTTTC  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  CTTGTTGGAGTACAATCACCAGATCTTGCAAGAGAATTCACAGCTCAAAGAGACAGTTTC  308

Query  210  TTCCTTTTATAATCAATATACTATATCTTATGGAAACCATGAAGATATACTTGGAAACAT  269
             |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  309  ATCCTTTCATGATCAATATACTATATCTTATGGAAACCATGAAGGTATACTTGGAAACAC  368

Query  270  CAATGATT  277
            ||||||||
Sbjct  369  CAATGATT  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5