BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487651
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08160.1 | Symbols: ATPK3, PK3 | serine/threonine protein ki... 1906 0.0
> AT5G08160.1 | Symbols: ATPK3, PK3 | serine/threonine protein
kinase 3 | chr5:2625559-2628110 REVERSE LENGTH=1556
Length=1556
Score = 1906 bits (1032), Expect = 0.0
Identities = 1126/1171 (96%), Gaps = 8/1171 (1%)
Strand=Plus/Plus
Query 1 ATCGATTCGTTGGTCAAGAGGAGACTGTGCGTAGTGTGATTCGTGAGCATGGGCTGTTCG 60
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 124 ATCGATTCGTTGGTCAAGAGGAGATTGTGC---GTGTGATTCGTGAGCATGGGCTGTTCG 180
Query 61 TTTTCGGGATTGAACGCGCTTTACGACGCCGTCAACGGCGGAGGCGACGTCTGGATCAAT 120
||||| ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 181 TTTTCAGGATTGAACGCACTTTACGACGCCGTCAACGGTGGAGGTGACGTATGGATCAAT 240
Query 121 GAGAATCGGTTCAGGATCGTCAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG 180
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAATCGATTCAGGATCGTGAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG 300
Query 181 GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA 360
Query 241 GTCAAGGATCCGGCTCATCTCTCCGCTGATGGAACTTATGCTATGAAGAAAGTTTTGATT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTCAAGGATCCGGCTCATCTCTCCGCTGACGGAACTTATGCTATGAAGAAAGTTTTGATT 420
Query 301 CAGAACAAGGAGCAATTGGAATTGGTGCGGGAGGAGATCCGTGTTTCATCATTGTTCAAT 360
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 CAGAACAAGGAGCAATTGGAATTGGTGCGTGAGGAGATCCGTGTTTCTTCATTGTTCAAT 480
Query 361 CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG 540
Query 421 GGAGCTTGGAAACACGAGGCCTTCTTGCTATTTCCTGTTCACTTGGATGGGACCTTGCTG 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GGAGCTTGGAAACACGAGGCCTTCTTGCTGTTTCCTGTTCACTTGGATGGGACCTTGCTG 600
Query 481 GATAATTTCACTTTGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTTTTGCAC 540
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 GATAATTTCACTTTGATGAAGGCTAAAAAAGAAACTTTCTCAACAACTGATGTTTTGCAC 660
Query 541 ATATTCCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCCACCTTATGCT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 661 ATATTCCGTCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCCACCATATGCT 720
Query 601 CACAACGATGTCAAACCTGGAAACGTGCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT 660
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 721 CACAACGATGTCAAACCTGGCAACGTCCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT 780
Query 661 GCGATTTTGATGGACTTTGGGAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA 720
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCGATATTGATGGACTTTGGAAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA 840
Query 721 GAGGCCTTACAATTACAGGAATGGACATCTGAGCATTGTTCAGCACCGTTTCGAGCTCCC 780
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 GAGGCCTTACAGTTACAGGAATGGACATCTGAGCATTGCTCAGCACCGTTTCGAGCTCCC 900
Query 781 GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGACGAGAGAACAGATATCTGGTCACTA 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGATGAGAGAACAGATATCTGGTCACTA 960
Query 841 GGCTGCACATTATATGCAATAATGTACGGTGTGTCTCCATTCGAGTATGCTCTTGGAGAA 900
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 961 GGCTGCACATTATATGCAATAATGTATGGTGTGTCTCCATTCGAGTATGCGCTTGGAGAA 1020
Query 901 TCTGGTGGAAGTCTTCAGCTCGCAATCGTGAACGCTCAGATCAAGTGGCCAAACACTGGA 960
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 TCTGGTGGAAGTCTTCAGCTTGCAATCGTGAACGCTCAGATCAAATGGCCAAACACTGGA 1080
Query 961 CCAAAGGCTTCTTATCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAG 1020
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCAAAAGCTTCTTACCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAA 1140
Query 1021 GCTGCGGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAGTTGATCGCTAAA 1080
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 GCTGCTGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAATTGATCGCTAAA 1200
Query 1081 TTCACCAAATGATTTCCTAATTATGGTGGTTTTCCAAAAA-GGTGAAAGGAG-GAAAAGA 1138
|||||||||||||| || ||||||| |||||||| ||||| |||||||||| |||||||
Sbjct 1201 TTCACCAAATGATTCCCGAATTATGTTGGTTTTCAAAAAAAGGTGAAAGGAAAGAAAAGA 1260
Query 1139 AAAAGACTCTTTATACATTGCTTTGTCTCTT 1169
| |||||||||||||||||||||||||||
Sbjct 1261 A---GACTCTTTATACATTGCTTTGTCTCTT 1288
Score = 187 bits (101), Expect = 2e-46
Identities = 163/190 (86%), Gaps = 15/190 (8%)
Strand=Plus/Plus
Query 1161 TTGTCTCTTCGTAATGTATTTTGAACTATTTAGGATTCGGGGTCTTCTTTTTGACTATGG 1220
||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1357 TTG-CTCTTCGTAATGTATTTTGAACTTTTTAGGATTCGGGGTTTTCTTTTTGACTATGG 1415
Query 1221 GAAGTTGTGAACCAATAAATTTACTTAAAGGACAATATAAAT--TAGTTGTCTTAATTCT 1278
|||||||||||||||||||||||||||| | ||| |||| | |||||||| |||||||
Sbjct 1416 GAAGTTGTGAACCAATAAATTTACTTAA-G-ACAGTATATCTCGTAGTTGTCCTAATTCT 1473
Query 1279 GGACAAT-ATG-TCGATGATGCGT-TTATAAATTTGTGCTGATTAAAAAATATATTAATT 1335
|| | || ||| | | | |||| | |||||| |||||||||||| | | | | ||||||
Sbjct 1474 GGTCGATGATGCT-G-TAATGC-TATTATAATTTTGTGCTGATTCATA--T-T-TTAATT 1526
Query 1336 ATAACCATAG 1345
||||||||||
Sbjct 1527 ATAACCATAG 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5