BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487652
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08170.1 | Symbols: EMB1873, ATAIH | porphyromonas-type pept... 2056 0.0
> AT5G08170.1 | Symbols: EMB1873, ATAIH | porphyromonas-type peptidyl-arginine
deiminase family protein | chr5:2628325-2631098
REVERSE LENGTH=1541
Length=1541
Score = 2056 bits (1113), Expect = 0.0
Identities = 1254/1323 (95%), Gaps = 5/1323 (0%)
Strand=Plus/Plus
Query 1 TCTCTCACAAAAACATCGTAAAAAATGGAGGAGTCACGAGAATCGCCGGCGGAACACGGC 60
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 28 TCTCTCACAAAAACATCGTGAAGAATGGAGGAGTCACGAGAATCGCCGGCGGAACACGGC 87
Query 61 TACTACATGCCGGCGGAATGGGAACCTCATGCTCAAACTTGGATCGGTTGGCCTGAACGG 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 88 TACTACATGCCGGCGGAATGGGATTCTCATGCTCAAACTTGGATCGGTTGGCCTGAACGG 147
Query 121 CAAGATAACTGGCGGCACAACGCTTTACCCGCACAGCGAGTGTTTGCAGATGTTGCAAAG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 148 CAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAG 207
Query 181 GCCATCTCAAAGTTCGAGCCTGTGACTGTCTGTGCAAGCCCTGCTCAGTGGGAAAATGCA 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 208 GCCATCTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGTGGGAAAATGCA 267
Query 241 AGGAAGCAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTC 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AGGAAACAGCTTCCAGAGGATATAAGAGTTGTTGAGATGAGCATGAATGATTCTTGGTTC 327
Query 301 CGCGACTCTGGACCAACTTTCATTGTGCGGAAAAGACCATTCAAGCTCAGTTCTCTTAAC 360
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 328 CGCGACTCTGGACCAACTTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAAC 387
Query 361 CGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CGAAACATTGCTGGGATCGACTGGAATTTCAATGCCTGGGGAGGAGCTAATGATGGCTGT 447
Query 421 TACAATGATTGGAGTCATGACCTTCTAGTTTCACGAAAGATTCTCGCTTTGGAACGGATT 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 448 TACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGATTCTCGCTTTGGAACGAATT 507
Query 481 CCACGATTTCAACATTCGATGATTCTTGAAGGGGGCAGCATCCACGTAGACGGGGAAGGA 540
||| |||||||||||||||||||||||||||| ||||||||||| || || |||||||||
Sbjct 508 CCAAGATTTCAACATTCGATGATTCTTGAAGGAGGCAGCATCCATGTCGATGGGGAAGGA 567
Query 541 ACCTGCCTAGTCACAGAAGAGTGTCTCCTGAACAAAAACCGAAACCCTCATATGAGTAAA 600
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 568 ACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATATGAGTAAA 627
Query 601 GAGCAAATAGAGGAAGAACTAAAGAAGTATCTCGGAGTAAAAACATTTATCTGGCTTCCT 660
|||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||
Sbjct 628 GAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCT 687
Query 661 CGTGGTCTTTACGGTGACGAGGACACAAACGGTCACATTGACAACATGTGCTGCTTCGCT 720
|||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 688 CGTGGTCTTTACGGGGATGAGGACACAAATGGTCACATTGATAACATGTGCTGCTTCGCT 747
Query 721 AGACCTGGAGTTGTGTTATTGTCTTGGACAGATGATGAAATTGATCCTCACTACGAAAGG 780
||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 748 AGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGG 807
Query 781 TCTGTAGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTTGTGGAAGGAAGATTCAA 840
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 808 TCTGTGGAAGCTCTTTCGGTTTTGTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAA 867
Query 841 GTCATTAAACTTCACATTCCGGGACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATC 900
|||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 868 GTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATC 927
Query 901 ACTCAGGACGGTGAAGCTATACCCAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTG 960
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 928 ACTCAGGATGGTGAAGCTATACCAAGACTTGCAGGGACAAGACTCGCAGCATCGTATGTG 987
Query 961 AACTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGAT 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGAT 1047
Query 1021 AAAGAAGCAATTCGTGTCCTCTCGGAGACATTTCCTCATCACTCGGTTGTGGGAATCGAG 1080
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1048 AAAGAAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGGTTGTGGGAATCGAG 1107
Query 1081 AATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATACATTGTATAACGCAGCAACAACCG 1140
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 1108 AATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGCAGCCG 1167
Query 1141 GCGGAGCCTAGTTCCGTCGCTGAGAACGGCCACTGACGGTGTTCTCCACGCGGCGCCGAG 1200
|||||||||| ||||||||| || || |||||||||| ||| ||| |||| | |||||
Sbjct 1168 GCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGAC--TGT-CTCTGCGCGCCACCGAG 1224
Query 1201 GGATTGATGAATCCTGGTCGTTGATTTTTTAAA-TACAGATTTGATTCGTGAGGACGAAC 1259
||||| ||||||||||| ||||||| ||||||| ||||||||||| | |||||||||||
Sbjct 1225 GGATTTATGAATCCTGGCCGTTGATATTTTAAAATACAGATTTGAAGCTTGAGGACGAAC 1284
Query 1260 GAGAGCTGTTCGTTAATTGGATCCTGTATCT-ATGGTTCGTTGACTAAGAAATATATTAT 1318
|||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1285 GAGAGCCGTTCATTAATTGGATCCTGTATTTTATGGTTCGTTGACTAAGAAATATATTAT 1344
Query 1319 TGG 1321
|||
Sbjct 1345 TGG 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5