BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487654 Length=887 Score E Sequences producing significant alignments: (Bits) Value AT5G08190.1 | Symbols: NF-YB12 | nuclear factor Y, subunit B12 ... 994 0.0 > AT5G08190.1 | Symbols: NF-YB12 | nuclear factor Y, subunit B12 | chr5:2635902-2637433 FORWARD LENGTH=1002 Length=1002 Score = 994 bits (538), Expect = 0.0 Identities = 825/949 (87%), Gaps = 78/949 (8%) Strand=Plus/Plus Query 1 TTCTGGTCTTATGtttttttGCCCTAATCGACTTCTGCGTAGAGAAACCGAAAAAAGGAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3 TTCTGGTCTTATGTTTTTTTGCCCTAATCGACTTCTGCGTAGAGAAACCG-AAAAAGGAG 61 Query 61 AGAGAAAATCCGCCGATAAGATATCCGTACAACCCGACCGACTTCACGTCTCCGATCTCG 120 |||||||||||||||||||||| ||||| | ||||| |||||||||||||||| Sbjct 62 AGAGAAAATCCGCCGATAAGAT-TCCGT--------A-CGACTGCACGTCTCCGATCTCG 111 Query 121 CCGTGACTCGGTCTCGAGATTCTGTTAACT---C-G----CCGTCGTTGATATCCCACCG 172 |||||| || ||||||||| |||||||||| | | ||||||||||| | || | | Sbjct 112 CCGTGAATCTGTCTCGAGAGTCTGTTAACTCACCGGATCTCCGTCGTTGATCTGCCTCTG 171 Query 173 TTTCGATCC-TCGGTAAAGTCTATCTCATACGATGGATCCGATGGATATAGTTGGAAAAT 231 ||||||||| | | |||| || || | | || |||||||||||||||||||||||||||| Sbjct 172 TTTCGATCCGT-GTTAAACTCGATTTAAAACTATGGATCCGATGGATATAGTTGGAAAAT 230 Query 232 CAAAGGAAGATGCTTCGCTTCCTAAAGCTACCATGACGAAAATTATAAAGGAGATGTTAC 291 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 231 CAAAGGAAGATGCTTCGCTTCCGAAAGCTACCATGACGAAAATTATAAAGGAGATGTTAC 290 Query 292 CCGCAGAGGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGCGTAGAGT 351 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 291 CCGCAGATGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGT 350 Query 352 TCATAAATCTTATATCCTCGGAGTCTAACGAAGTATGTAACAAAGAGGATAAACGAACAA 411 |||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||| Sbjct 351 TCATAAATCTTATATCGTCGGAGTCGAATGAAGTGTGTAACAAAGAGGATAAACGAACAA 410 Query 412 TCGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTCGGCTTTGGGGAATACGTCGAAG 471 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 411 TAGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTTGGCTTTGGGGAATACGTAGAAG 470 Query 472 AAGTCTATGCCGCTTATGAGCAACATAAATATGAAACCATGCAAGATTCACAGAGAAGCG 531 |||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 471 AAGTTTATGCCGCGTATGAGCAACATAAATATGAAACCATGCAGGATTCGCAGAGAAGTG 530 Query 532 TGAAGATGAACAGCGGAGCAGAGATGACGGAAGAAGAAGCAGCAGCGGAACAACAGAGAA 591 |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 531 TGAAGATGAATAGCGGAGCAGAGATGACGGAAGAAGAGGCGGCAGCGGAACAACAGAGGA 590 Query 592 TGTTTGCCGAAGCTCGAGCAAGAATGAATGGAGGTGTTTCAGTTCCTCAACCAGAGCAAC 651 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 591 TGTTTGCAGAAGCTCGAGCAAGAATGAATGGAGGTGTTACAGTTCCTCAACCAGAGCAAC 650 Query 652 TAGAAGAA----A-C--C--CAGCAAACAAGTCTACAAAGCTAATCAACAAAA------- 695 |||||||| | | | || |||||||||||||||||||||||||||||| Sbjct 651 TAGAAGAACCCCAACAACAACAACAAACAAGTCTACAAAGCTAATCAACAAAACCGCAAA 710 Query 696 ----T---TT-TTT-AACATTATCCTTTTGACTTGTTTTT-T--CT--C--T------GT 733 | || ||| ||||||||||||||||||| ||||| | || | | || Sbjct 711 GGAATCCCTTATTTTAACATTATCCTTTTGACTTCTTTTTCTTTCTAGCAATATCTCTGT 770 Query 734 AAAGTGCAAAATTCGTCGCGTCTTGGTGTTGATATGCTCTTTACAtttttttttAACCTA 793 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 771 AAAGTGCAAAATTCGTCGCGTCTTGGTGTTGATATGCTCTTTACATTTTTT---AACTTA 827 Query 794 GATTTGTGTTTTT-CC--TTT-----AA---A---TCACTTTGGTGATTCTGATGTAATT 839 | |||||||||| || ||| || | |||||| |||||||| ||||||||| Sbjct 828 GGGTTGTGTTTTTTCCCCTTTCTTTGAATCTAAAATCACTTAGGTGATTCAGATGTAATT 887 Query 840 AGTAAGGTTTGTCTTGAATCTTAGCAACTAGCT-TCATTTGAATCCAAA 887 |||||||||| | |||||||||||||||||| | ||||| ||||||||| Sbjct 888 AGTAAGGTTTTTATTGAATCTTAGCAACTAG-TGTCATTCGAATCCAAA 935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43301834714 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5