BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487654
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08190.1 | Symbols: NF-YB12 | nuclear factor Y, subunit B12 ... 994 0.0
> AT5G08190.1 | Symbols: NF-YB12 | nuclear factor Y, subunit B12
| chr5:2635902-2637433 FORWARD LENGTH=1002
Length=1002
Score = 994 bits (538), Expect = 0.0
Identities = 825/949 (87%), Gaps = 78/949 (8%)
Strand=Plus/Plus
Query 1 TTCTGGTCTTATGtttttttGCCCTAATCGACTTCTGCGTAGAGAAACCGAAAAAAGGAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 TTCTGGTCTTATGTTTTTTTGCCCTAATCGACTTCTGCGTAGAGAAACCG-AAAAAGGAG 61
Query 61 AGAGAAAATCCGCCGATAAGATATCCGTACAACCCGACCGACTTCACGTCTCCGATCTCG 120
|||||||||||||||||||||| ||||| | ||||| ||||||||||||||||
Sbjct 62 AGAGAAAATCCGCCGATAAGAT-TCCGT--------A-CGACTGCACGTCTCCGATCTCG 111
Query 121 CCGTGACTCGGTCTCGAGATTCTGTTAACT---C-G----CCGTCGTTGATATCCCACCG 172
|||||| || ||||||||| |||||||||| | | ||||||||||| | || | |
Sbjct 112 CCGTGAATCTGTCTCGAGAGTCTGTTAACTCACCGGATCTCCGTCGTTGATCTGCCTCTG 171
Query 173 TTTCGATCC-TCGGTAAAGTCTATCTCATACGATGGATCCGATGGATATAGTTGGAAAAT 231
||||||||| | | |||| || || | | || ||||||||||||||||||||||||||||
Sbjct 172 TTTCGATCCGT-GTTAAACTCGATTTAAAACTATGGATCCGATGGATATAGTTGGAAAAT 230
Query 232 CAAAGGAAGATGCTTCGCTTCCTAAAGCTACCATGACGAAAATTATAAAGGAGATGTTAC 291
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 231 CAAAGGAAGATGCTTCGCTTCCGAAAGCTACCATGACGAAAATTATAAAGGAGATGTTAC 290
Query 292 CCGCAGAGGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGCGTAGAGT 351
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 291 CCGCAGATGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGT 350
Query 352 TCATAAATCTTATATCCTCGGAGTCTAACGAAGTATGTAACAAAGAGGATAAACGAACAA 411
|||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 351 TCATAAATCTTATATCGTCGGAGTCGAATGAAGTGTGTAACAAAGAGGATAAACGAACAA 410
Query 412 TCGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTCGGCTTTGGGGAATACGTCGAAG 471
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 411 TAGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTTGGCTTTGGGGAATACGTAGAAG 470
Query 472 AAGTCTATGCCGCTTATGAGCAACATAAATATGAAACCATGCAAGATTCACAGAGAAGCG 531
|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 471 AAGTTTATGCCGCGTATGAGCAACATAAATATGAAACCATGCAGGATTCGCAGAGAAGTG 530
Query 532 TGAAGATGAACAGCGGAGCAGAGATGACGGAAGAAGAAGCAGCAGCGGAACAACAGAGAA 591
|||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 531 TGAAGATGAATAGCGGAGCAGAGATGACGGAAGAAGAGGCGGCAGCGGAACAACAGAGGA 590
Query 592 TGTTTGCCGAAGCTCGAGCAAGAATGAATGGAGGTGTTTCAGTTCCTCAACCAGAGCAAC 651
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 591 TGTTTGCAGAAGCTCGAGCAAGAATGAATGGAGGTGTTACAGTTCCTCAACCAGAGCAAC 650
Query 652 TAGAAGAA----A-C--C--CAGCAAACAAGTCTACAAAGCTAATCAACAAAA------- 695
|||||||| | | | || ||||||||||||||||||||||||||||||
Sbjct 651 TAGAAGAACCCCAACAACAACAACAAACAAGTCTACAAAGCTAATCAACAAAACCGCAAA 710
Query 696 ----T---TT-TTT-AACATTATCCTTTTGACTTGTTTTT-T--CT--C--T------GT 733
| || ||| ||||||||||||||||||| ||||| | || | | ||
Sbjct 711 GGAATCCCTTATTTTAACATTATCCTTTTGACTTCTTTTTCTTTCTAGCAATATCTCTGT 770
Query 734 AAAGTGCAAAATTCGTCGCGTCTTGGTGTTGATATGCTCTTTACAtttttttttAACCTA 793
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 771 AAAGTGCAAAATTCGTCGCGTCTTGGTGTTGATATGCTCTTTACATTTTTT---AACTTA 827
Query 794 GATTTGTGTTTTT-CC--TTT-----AA---A---TCACTTTGGTGATTCTGATGTAATT 839
| |||||||||| || ||| || | |||||| |||||||| |||||||||
Sbjct 828 GGGTTGTGTTTTTTCCCCTTTCTTTGAATCTAAAATCACTTAGGTGATTCAGATGTAATT 887
Query 840 AGTAAGGTTTGTCTTGAATCTTAGCAACTAGCT-TCATTTGAATCCAAA 887
|||||||||| | |||||||||||||||||| | ||||| |||||||||
Sbjct 888 AGTAAGGTTTTTATTGAATCTTAGCAACTAG-TGTCATTCGAATCCAAA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5