BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487656
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08200.1 | Symbols: | peptidoglycan-binding LysM domain-con... 2780 0.0
> AT5G08200.1 | Symbols: | peptidoglycan-binding LysM domain-containing
protein | chr5:2638036-2640824 FORWARD LENGTH=1895
Length=1895
Score = 2780 bits (1505), Expect = 0.0
Identities = 1782/1905 (94%), Gaps = 61/1905 (3%)
Strand=Plus/Plus
Query 1 ATAATTCCAATTCCACCGCTGCGACGAGAGAGGAGCACAGAGATCTCTCGTTTCGTTTTT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAACTCCAATTCCACCGCTGCGACGAGAGAGGAGCACAGAGATCTCTCGTTTCGTTTTT 60
Query 61 CCCGGAAAATCTGGGGAAA-AATAA-TAAGCAAAATTTTCCATCGATTCTCTGAG--AAA 116
||||||||||||| ||||| || || ||||||||| ||||||||||| ||||||| |||
Sbjct 61 CCCGGAAAATCTGAGGAAATAA-AATTAAGCAAAAGTTTCCATCGATCCTCTGAGAAAAA 119
Query 117 ATTCGACTCTCTAGTCCACGAG----tttttt-ttCACCTCTCTC-TTTTCGTTAATCTC 170
|||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||
Sbjct 120 ATTCGACTCTCTAGTCCACGAGTTTTTTTTTTGTTCACCTCTCTCTTTTTCGTTAATCTC 179
Query 171 TCT----CAACGCCTCTTCACCATTTCCTTG----T-A---------------ttttttt 206
||| ||||||||||||| |||||||||| | | |||||||
Sbjct 180 TCTCAAACAACGCCTCTTCATCATTTCCTTGTAATTCACTTTCTTCTCCGTTTTTTTTTT 239
Query 207 ttttGAATCTCTC-T--TCCTTCACCGTTTCGATTTCTTG-TTCCTCTACTTGATGATGC 262
||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 240 TTTTGAATCTCTCTTCGTCCTTCGCCGTTTCGATTTCTTGTTTCCTCTACTTGATGATGA 299
Query 263 AATTTTGATCAGATCTAGTGTAGTATAGGTAGGATTTTCCCAGAGAG-TTATGTTTATGG 321
||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||
Sbjct 300 AATTTTGATCAGATCTAGTGTAGAATAGTTAGGATTTACCCAGAGAGATTATGTTTATGG 359
Query 322 ATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAACGGCAAATTCC 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 ATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAATGGCAAATTCC 419
Query 382 GAGATGATAATGGTTATGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTT 441
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATGATAATGGTTTTGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTC 479
Query 442 CTAGATCGAAGATCCTCCGGATCCCGTCGCCGACCTCGTCTCCTCCACCTTCTAGTTCTT 501
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 480 CTAGATCGAAGATCCTTCGGATCCCGTCTCCGACCTCGTCTCCTCCACCTTCTAGCTCTT 539
Query 502 CTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATACATCGAACACCGCATCTCCA 561
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 CTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATATATCGAACACCGCATCTCCA 599
Query 562 AGTTTGATACTCTCGCCGGCATTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAA 621
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTTTGATACTCTCGCCGGCGTTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAA 659
Query 622 GGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGT 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGT 719
Query 682 TACCTGGGAGGCATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGG 741
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TACCTGGGAGACATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGG 779
Query 742 GATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGACCAGGAAGTGTTTGACTCAT 801
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 GATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGAACAGGAAGTGTTTGACTCAT 839
Query 802 TTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCATTGC 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 TTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCACTGC 899
Query 862 AAGGTTATTACGGGCTAAAACCAGCAGATAGAACAGTCTCTGATGGAGGATGCTTGGAGA 921
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 900 AAGGTTATTACGGGCTAAAACCAGCAGACAGAACAGTCTCTGATGGAGGATGCTTCGAGA 959
Query 922 TGGGAAATTACAAAACGGAATCTTCTCATCATCTCTTTAACAATGGTGATAACGGATATC 981
||||||||||||| |||||| ||||||||||| |||| ||||| ||||||||||||||||
Sbjct 960 TGGGAAATTACAAGACGGAAACTTCTCATCATATCTTCAACAACGGTGATAACGGATATC 1019
Query 982 TCAGACCTTTCCCATCCACAAATACTCCCTTGAATCACCACAGGAAATCAAGAAGCTTGG 1041
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1020 TCAGACCTTTCCCATCCACAAATACTCCCTTAAATCACCACAGGAAATCTAGAAGCTTGG 1079
Query 1042 TCAATGCACTTATCGAAGAGGTTAACCAATCACCCGATAATAATACTCAAGAACCAA-AC 1100
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1080 TCAATGCGCTTATCGAAGAGGTTAACCAATCACCTGATAATAATACTCAAGAACCAACA- 1138
Query 1101 TCCGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCA 1160
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCTGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCA 1198
Query 1161 GAACTTGTGTTGAAAGAAGAGAACAGTAGCAGCAATGGCGGGTTTTTATCAATAGCCGGA 1220
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 1199 GAACTTGTGTTGAAAGAAGAGAACGGTAGCAGCAATGGCGGATTTTTATCAATAGCTGGA 1258
Query 1221 AAAGGCTTAGCTTTGAGATCGAAAGCTTCAAGCAGAACCAATCTAGCAGCAGAATCTGAG 1280
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 AAAGGCTTAGCTTTGAGATCGAAAGCGTCAAGCAGAACCAATCTAGCAGCAGAATCTGAG 1318
Query 1281 ACCGGTAATTTCAATCCAGTGCCAATGAACTTGATGGATGCTCCAGTTGCAGACAGCTTT 1340
| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1319 AACGGTAATTTCAATCCGGTATCAATGAACTTGATGGATGCTCCAGTTTCAGACAGCTTT 1378
Query 1341 AGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAAT 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAAT 1438
Query 1401 AATGGTTCGTTGTCTCTATGGCCAACTTCAAAGTGGAGCTTGAAACCTGATTTGCTTACA 1460
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1439 AATGGTTCGTTGTCGCTATGGCCAACGTCAAAGTGGAGCTTGAAACCGGATTTGCTTACA 1498
Query 1461 CCAGCGGCTATTACAAGCTCCATCTTTGATGGATTACCAAAGCCTTTAACAGGAAGGATA 1520
|| ||||| |||||||| |||||||||||||||||||||||||||||||| || | | |
Sbjct 1499 CCTGCGGCCATTACAAGTTCCATCTTTGATGGATTACCAAAGCCTTTAACTGGTCGAAGA 1558
Query 1521 AACAAAACGGCTCTGGACTAAA-A-AAGGTCAGTTTCTGGTTATTT-TAACTACCTTATT 1577
|||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||
Sbjct 1559 AACAAAACGGCTCTGGACTAAACACAAGGTCAGTTTCTGGTTATTTATAACTGCCTTATT 1618
Query 1578 CATTTTTTGGAG-ACTATACAAATCAATCGTCAAAAGAAGCTATTTAGCTTAAGGCGGAG 1636
| |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1619 C-TTTTTTGGGGTACTATACAAATCAATTGTCAAAAGAAGCTATTTAGCTTAATGCGGAG 1677
Query 1637 TAAATACAAAAGTAAAGAGATTAGAG-aaaa-aaaattggaaggaaggaagaaagaaaaa 1694
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 1678 TAAATACAAAAGTAAAGAGATTAGAGGAAAACAAAATTG-AAGGAAGGAAGAAAGAAAAA 1736
Query 1695 cttccaaaaattgaaatttataaagaagCTTCTGATGATGTAATGATTGGGTCttttttt 1754
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1737 CTTCCGGAAATTGAAATTTATAAGGAAGCTTCTGATGATGTAATGATTGGGTCTTTTTT- 1795
Query 1755 ttttttGTAAGTTTATATTCTGTACCATTTTCTGGGTGCGG-TTGTATCGACAAAATCTG 1813
||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1796 ------GTAAGTT-ATATTCTGTACCATTTTCTGGGTGGGGGTTGTATCGACAAAATCTG 1848
Query 1814 TAGCGTAGTTTTACTTTTATTTTT-ATTTAATGATACATTGTCAC 1857
||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1849 TAGCGTAGTTTTA-TTTTATTTTTGATTTAATGATACATTGTCAC 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91917197895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5