BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487659
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2019 0.0
> AT5G08270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G23200.1);
Has 89 Blast hits to 86 proteins in 45 species: Archae - 0;
Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr5:2661658-2663627
FORWARD LENGTH=1395
Length=1395
Score = 2019 bits (1093), Expect = 0.0
Identities = 1292/1386 (93%), Gaps = 21/1386 (2%)
Strand=Plus/Plus
Query 1 GAATCAATCACCCAAAGAGATGTTTCAACTGAAGCAGTTGCTGCGTGCGATTCATCTTCT 60
|||||||||||| |||||||| |||||||||||||| | | |||||||||||||||
Sbjct 1 GAATCAATCACCGAAAGAGATCTTTCAACTGAAGCA----C--C-TGCGATTCATCTTCT 53
Query 61 TCTCTGCCCGTCGATTCAACGTGAGGAGGAAAAAGAATGGCGTTTTCAAAAATGATGTTT 120
||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 54 TCTCTGCCCGTCGTTTCAACGTGAGGAGAAAAAAGAATGGCGTTTGCAAAAATGATGTTT 113
Query 121 CTTTTCAGCAAATTTCAGCAGGGTGTTGGTATTCTAGCAAAGAGTACTACTTTTGCTAAG 180
|||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 114 CTTTTCGGAAAATTTCAGCAGGGTGTTGGTGTTCTAGCAAAGAGTACCACTTTTGCTAAG 173
Query 181 AGTCCAAGGCAACTGCAATTTGAAGCCGACATTAACAAACTGTTTATGTTTACAAGCTAT 240
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 174 AATCCAAGGCAACTGCAATTTGAAGCCGACATTAACAAATTGTTTATGTTTACAAGCTAT 233
Query 241 AATCGTTTGGGACGAGATGCTGAGGAGGCTGATGCAGAAGAGATCATTGAGATTGCTGGT 300
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 234 AATCGTTTGGGACGAGATGCTGAGGAGGCTGATGCTGAAGAGATTATTGAGATGGCTGGT 293
Query 301 AAAGCCACTTTATCTGAGCAACAGAAGCAAGTTCAGGAGAACATTCACTACCAAGTCGAA 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 294 AAAGCCACTTTCTCTGAGCAACAGAAGCAAGTTCAGGAGAACATTCACTACCAACTCCAA 353
Query 361 AATTTTTGTTCTTCGATGGACGAGATTCTTCTTACCAATATTAACAAAACAAAGGAAGAA 420
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 354 AATTTTTGTTCTTCAATGAACGAGATTCTTCTTACCAATATTGACAAAACAAAGGAT--- 410
Query 421 CTATATAAGCCAGGATCAGAATCAAGAAGGGACAACAATGTCCCAGCTGCAGACAAGCCC 480
||| || |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 411 CTAAATGAGCCAGGATCAGAATCGAGAAGGGACAACATTGTCCCAGCTGCAGACAAGCCC 470
Query 481 ATTGTTCCTGAGACTAAACCGCTGAAACTCGCTGAAGTCTCACATCAATTAAAGGATCGA 540
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 471 ATTGTTCCTGAGACTAAACCGCTGAAACTCGATGAAGTCTCACATCGATTAAAGGATCGA 530
Query 541 ATTGGGTACACCCTCCAGATCAAACCATCCTTAATACCTCACAAAGATGCGGGTCAAGGC 600
||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 531 GTTGGGTACACCCTTGAGATCAAACCATCGTTAATACCTCACAAAGACGCGGGTCAAGGT 590
Query 601 TGTTTTATAGAAGGTGAAGCAGATGTGGGAGCTGTCGTAGCCTTTTACCCTGGTGTGATT 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 591 TGTTTTATAGAAGGTGAAGCAGATGTGGGAGCTGTCCTAGCCTTTTACCCTGGTGTGATT 650
Query 661 TACTCTCCTGCATTCTACAGATACATTCCCGGGTACCCAAATGTTGATGCACAGAACTCA 720
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 651 TACTCTCCTGCATTCCACAGATACATTCCCGGGTATCCAAATGTTGATGCACAGAACTCA 710
Query 721 TATCTGATCACTGGGTATGACGGGACGGTAATAAACGCTCAACCTTGGGGTCTTGGAGGA 780
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 711 TATCTGATCACTGGGTATGATGGGACGGTAATAAACGCTCAACCTTGGGGTCGTGGAGGA 770
Query 781 GA-ATCACGGGAAGTATGGAACGGCTCCTTTTCAACGCCTGAGATCAGAACAGACA-CTA 838
| ||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 771 -ATATCTCGGGAAGTATGGAACGGCTCCTTTACAACGCCTGAGATCAGAACAGA-AGCTA 828
Query 839 CAAC-AGCGGAAAACAGTTCCTCCAAGGTATGGAAGATGCTGAGTAGGCCGCTTGAAGGT 897
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 829 CAACCA-CGGAAAACAGTTCAGATAAGGTATGGAAGATGCTGAGTAGGCCGCTTGAAGGT 887
Query 898 TCGGGTAGTGTAGAAGCGGATCTTGAAATGAGAAACCCGTTAGCGTTTGGTCATTTCATC 957
|| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCAGGTGGTGTAGAAGCGGTTATTGAAATGAGAAACCCGTTAGCGTTTGGTCATTTCATC 947
Query 958 AATCACCCTGGTAAAGACATGGAACCTAATGTCATGATGTGCCCCTACGACTTCCCT-TT 1016
|| |||||||||||||| |||||| ||||||||||||| ||||| |||||||||| | ||
Sbjct 948 AACCACCCTGGTAAAGAAATGGAATCTAATGTCATGATTTGCCCTTACGACTTCC-TGTT 1006
Query 1017 GTCAGAGACAGAGATGCGAGCTTACATTCCGAATGTAGCTTTTGGGAACATAGAAGACGT 1076
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||
Sbjct 1007 GTCAGAGACAGAGATGCGAGCTTACATTCCGAATGTAGCTTTCGGGAACACAGGAGATGT 1066
Query 1077 AAAGATGGGGAGATTTGGAAGCTTCTTGTCTAGGACAGGAAGTAATAGCAGTTTGGATGC 1136
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AAAGATGGGGAGATTTGAAAGCTTCTTGTCTAGGACAGGAAGTAATAGCAGTTTGGATGC 1126
Query 1137 TCCTGTGCTGAAGACACTTGTTCTCGTGGCTACAAAAGCGTTGTGCAATGAGGAACTGAT 1196
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TCATGTGCTGAAGACAATTGTTCTCGTGGCTACAAAAGCGTTGTGCAATGAGGAACTGAT 1186
Query 1197 GCTGAATGACAGGCTGAGCAATTCCGAGAAAAGACTGGAGTGGTATATTCCACTCGATGA 1256
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1187 GCTGAATTACAGGCTGAGCAATTCCGAGAAAAGACTCGAGTGGTATATTCCACTTGATGA 1246
Query 1257 ACAAGAAGATCGAAGAGAA-TGGAGCTGAAGTATCTGGTTTTTATTTTGTCCCTCTAATT 1315
| |||||||||| || ||| || ||||||||| ||||| |||||||||||| ||||||||
Sbjct 1247 ATAAGAAGATCGGAG-GAAATGAAGCTGAAGTCTCTGGATTTTATTTTGTCTCTCTAATT 1305
Query 1316 TCTTGTGAACTAGTTTCATAGTGGGACCaaaaaaaaaGGGGTACAATTGCAAGAGGAATT 1375
||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |||||
Sbjct 1306 TCTTGTGTACTAGTTTCATCGTGGGAC-AGAAAAAAAGGGGTACAATTGCAAGATGAATT 1364
Query 1376 TAATCT 1381
||||||
Sbjct 1365 TAATCT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5