BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487662
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08300.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | ... 2388 0.0
AT5G23250.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | ... 1075 0.0
> AT5G08300.1 | Symbols: | Succinyl-CoA ligase, alpha subunit
| chr5:2667412-2669923 FORWARD LENGTH=1462
Length=1462
Score = 2388 bits (1293), Expect = 0.0
Identities = 1406/1460 (96%), Gaps = 9/1460 (1%)
Strand=Plus/Plus
Query 1 AAAAGTGTAGCC-TTAAGAGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCCTC 59
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAAGTGTAGCCTTTAA-AGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCTTC 59
Query 60 AAAACTAAGCTCCGCTGAATTTTCTTTGTTCCATTTCCGTCTTCACCCAGTTTAGGGTTC 119
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 60 AAAACCGAGCTCCGCTGAATTTTCTTTGCTCCATTTCCGTCTTCACACAGTTTAGGGTTC 119
Query 120 ACAAGTTGATTCGGATCGAGAA-CACCGAGAAGAAGAAGCCAGTCAATCATGTCTAGGCA 178
|||| |||||||||||||| || ||||||||||||||||||| |||||||||||||| ||
Sbjct 120 ACAACTTGATTCGGATCGA-AAGCACCGAGAAGAAGAAGCCAATCAATCATGTCTAGACA 178
Query 179 AGTCGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTGGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238
Query 239 GGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298
Query 299 GGATCCTCATCCTCCTGCGGCTGTTTTCGTTGACAAAAACACACGAGTCATGTGTCAAGG 358
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 299 GGATCCTCATCCTCCTGCGGCGGTTTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGG 358
Query 359 TATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418
Query 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAA 478
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAA 478
Query 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538
Query 539 ACCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598
Query 599 TATTACCGAAGGAATCCCTCAACATGACATGGTACGTGTTAAGCATGCTCTTAACGGTCA 658
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 599 TATCACCGAAGGAATCCCTCAACATGACATGGTACGTGTAAAGCATGCTCTTAACAGTCA 658
Query 659 ATCCAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCGAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718
Query 719 GATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATC 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 719 AATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATC 778
Query 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838
Query 839 TTGTGTAGGAATTGGTGGGGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAA 898
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TTGTGTAGGAATCGGTGGGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAA 898
Query 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGC 958
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGC 958
Query 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018
Query 1019 TATTGCCGGACTTACTGCACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTC 1078
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1019 TATTGCTGGACTTACTGCACCACCGGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTC 1078
Query 1079 TGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCCGGGGTGAAGGT 1138
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1079 CGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCTGGAGTGAAGGT 1138
Query 1139 TGTTGAATCTCCGGCTAAGATTGGAGCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1139 TGTTGAATCTCCGGCTAAGATTGGATCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198
Query 1199 TTTGAAGCAGTGAAGTGAATTTCACGAGCTTTTTCGCTTCtttttttCCATCTTGAAACC 1258
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1199 TTTGAAGCAGTGAAGTGAATTTCACTAGCTTT--CGCTTCTTTTTTTCCATCTTGAAACC 1256
Query 1259 TTCAAGaaaaaaagaaaa-aaaaaa-CCCTAATTCCACGCCATTGATGGCTGCACACTCT 1316
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 1257 TTCAAGAAAAAA-GAAAAGAAAAAAACCCTAATTCCACGCCATTGATGGCTGCACACTTT 1315
Query 1317 TTTGGGGTTTGTTTTGCTAAATTGATATGATTTTTCCAATTGAAGAGTGATAATTCAAAG 1376
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 1316 TTTGGGGTTTGTTTTGCTATATTGATATGATTTTTCCAATTGAACAGTGATAATTAAAAG 1375
Query 1377 AGATTCAAATCTTATTGCATTGGATCATTTTTAATGATATCTTCCAGTGCAAGAAATATG 1436
||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||| |
Sbjct 1376 AGATTCAAATCTTATGGCATTGGATTATTTTTAATGTTATCTTCCAGTACAAGAAATAAG 1435
Query 1437 AGGGAAGCAATGTTTCTTTA 1456
|| |||||||||||||||||
Sbjct 1436 AGTGAAGCAATGTTTCTTTA 1455
> AT5G23250.1 | Symbols: | Succinyl-CoA ligase, alpha subunit
| chr5:7830360-7832843 FORWARD LENGTH=1478
Length=1478
Score = 1075 bits (582), Expect = 0.0
Identities = 831/952 (87%), Gaps = 14/952 (1%)
Strand=Plus/Plus
Query 261 TCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTCGGA-TCCTCATCCTCCTGCGGC 319
||||||||||| ||| || ||||||||||||| | | | ||||| |||||||||||
Sbjct 179 TCTCTCACTTCATTGGTACAGTCTCGCTCCTTCGGGAC-AACTCCTCCGCCTCCTGCGGC 237
Query 320 TGT-TTTCGTTGACAAAAACACACGAGTCATGTGTCAAGGTATCACCGGAAAGAACGGCA 378
|| ||| || |||||||| ||||| ||||| || |||||||| |||||||||||||| |
Sbjct 238 GGTCTTT-GTCGACAAAAATACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGA 296
Query 379 CTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCGA 438
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 297 CCTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAA 356
Query 439 AGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAACTCTGTTGCTGAAGCTAAGG 498
||||||||||||||||||| || || || |||||||||||| ||||||||||||||||||
Sbjct 357 AGAAGGGTGGAACAGAACATTTGGGGCTACCTGTTTTCAACACTGTTGCTGAAGCTAAGG 416
Query 499 CTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGCACCTTTTGCTGCTGCTGCTA 558
|||| || |||||||||||||||||||| || || ||||| ||||| |||||||||||||
Sbjct 417 CTGAGACTAAAGCCAATGCCTCTGTGATCTACGTACCTGCGCCTTTCGCTGCTGCTGCTA 476
Query 559 TTATGGAGGGTATTGAG--GCTGAGTTAGATCTTATTGTGTGTATTACCGAAGGAATCCC 616
| ||||| ||| || || |||||||||||||||||||| ||||| || |||||||| ||
Sbjct 477 TCATGGAAGGT-TT-AGCTGCTGAGTTAGATCTTATTGTTTGTATCACTGAAGGAATTCC 534
Query 617 TCAACATGACATGGTACGTGTTAA-GCATGCTCTTAACGGTCAATCCAAAACTAGGCTGA 675
||||||||||||||| ||||| || || |||||||||| ||||||| |||||||||||||
Sbjct 535 TCAACATGACATGGTTCGTGTAAAGGC-TGCTCTTAACAGTCAATCAAAAACTAGGCTGA 593
Query 676 TTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAAGATTGGAATTATGCCGG 735
|||| || || || ||||| |||||||| |||||||||||||||||||| || ||||| |
Sbjct 594 TTGGCCCTAATTGTCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCAG 653
Query 736 GATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATCTGGAACCTTGACATATG 795
||||||| |||||||| |||||||| || ||||| || ||||||||||| ||||||||||
Sbjct 654 GATACATACACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATG 713
Query 796 AAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTACTTGTGTAGGAATTGGTG 855
|||||||||||||||| |||||||| ||| | || |||||||||||||||||||||||||
Sbjct 714 AAGCTGTTTTCCAAACTACTGCAGTAGGTTTGGGGCAATCTACTTGTGTAGGAATTGGTG 773
Query 856 GGGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAAATTCTTTGTTGATCCTC 915
||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| || |
Sbjct 774 GGGATCCGTTTAATGGGACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGTTGACCCCC 833
Query 916 AAACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCAG 975
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || |
Sbjct 834 AAACAGAAGGTATCGTTCTCATTGGAGAAATCGGTGGGACTGCAGAAGAAGATGCCGCTG 893
Query 976 CATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTTTATTGCCGGACTTACTG 1035
| |||||||||| || |||||| || |||||||| |||||||| || |||||||||||||
Sbjct 894 CTTTGATAAAGGAAAATGGTACAGACAAGCCTGTAGTTGCTTTCATAGCCGGACTTACTG 953
Query 1036 CACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTCTGGTGGTAAAGGTACGG 1095
|||||||||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||
Sbjct 954 CACCACCAGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCCGGTGGTAAGGGCACGG 1013
Query 1096 CTCAGGACAAAATTAAGAGTTTGA-ATGATGCCGGGGTGAAGGTTGTTGAATCTCCGGCT 1154
|||| ||||| || ||||| | | | || || || || ||||| ||||| || || |||
Sbjct 1014 CTCAAGACAAGATAAAGAGCCTAAGA-GACGCAGGAGTTAAGGTGGTTGAGTCACCAGCT 1072
Query 1155 AAGATTGGAGCAGCGATGTATGAGCTCTTTC-AAGAAAGAGGTCTTTTGAAG 1205
|||||||| || ||||||| |||||| |||| ||||||||||||||||||||
Sbjct 1073 AAGATTGGTGCGGCGATGTTTGAGCT-TTTCCAAGAAAGAGGTCTTTTGAAG 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5