BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487666
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08335.1 | Symbols: ATSTE14B, ATICMTB, ICMTB | Isoprenylcyst... 1382 0.0
AT5G23320.1 | Symbols: ATSTE14, STE14, ATSTE14A, ATPCM, ATICMTA... 455 4e-127
> AT5G08335.1 | Symbols: ATSTE14B, ATICMTB, ICMTB | Isoprenylcysteine
carboxyl methyltransferase (ICMT) family | chr5:2682229-2683712
FORWARD LENGTH=992
Length=992
Score = 1382 bits (748), Expect = 0.0
Identities = 828/867 (96%), Gaps = 3/867 (0%)
Strand=Plus/Plus
Query 58 TTT-CAAAAGTAATTCCGTCACTATAGCAAGCAAAGAATAAAGGGTAAAGGTGTAAACTT 116
||| ||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||
Sbjct 105 TTTACAAAAGTAATTCCTTGATTATAGCAAGCAAAGAATAAAGGGTAAAGGTGTAGACTT 164
Query 117 TGCTTCTCTCCTCCAAAGTCCACGCGATTCTCACTGCCAGCCTCTGTGAAATTTCCAGAC 176
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 165 TGCTTCTCTCCTTCAAAGTCCACGCGATTCTCACTGTCAGCCTCTGCGAAATTTCCAGTC 224
Query 177 TTTCTCGCATTTTCCCTCGTATCAGCCGTCAATTTCAAGTGGGGCTGAGTAATCTTGTGA 236
||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||
Sbjct 225 TTTCTCGCATTTTCCCTCGTAGCAGCCGTCAATTTCAACTGGGTCTAAGTAATCTTGTGA 284
Query 237 AGAATCAATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCT 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 AGACTCAATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCT 344
Query 297 GGCGATAATCTTCTTCCACACATCGGAATACATTCTCGCCGTAGCCATTCATGGAGCATC 356
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 345 GGCGATAATCTTCTTCCACACATCGGAGTACATTCTCGCCATAGCCATTCACGGAGCATC 404
Query 357 GAGAGTAACTTTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATCTC 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 405 GAAAGTAACTTTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATATC 464
Query 417 GGTCCTCGAGTACATAACCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGAT 476
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGTCCTCGAGTACATAGCCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGAT 524
Query 477 CAGCAATTTCGGTCTTATAATGATCATACTTGGAGAAATCATCCGAAAAATCGCGATAAT 536
||||||||||||||||| |||||||||||||||||||||| | || |||| |||||||||
Sbjct 525 CAGCAATTTCGGTCTTACAATGATCATACTTGGAGAAATCCTTCGCAAAACCGCGATAAT 584
Query 537 CACAGCAGGTAGATCGTTCACACACCTTATAAAGATTCGCCGGGAGGAGCATCATAGGCT 596
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 585 CACAGCAGGTAGATCGTTCACACACCTTATAAAAATTCGCCGGGAGGAGCATCATAAGCT 644
Query 597 TGTGACGGAAGGAGTGTATCAAATCATGAGGCATCCGAGTTACTCCGGGTTTCTCATTTG 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TGTGACAGAAGGAGTGTATCAAATCATGAGGCATCCGAGTTACTCCGGGTTTCTCATTTG 704
Query 657 GTCTGTGGGAACCCAAGTAATGCTGTGTAATCCAATTTCAGCCG-TTGCGTTTGCGGTTG 715
|||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 705 GTCTGTGGGAACGCAAGTAATGCTCTGTAATCCAATTTCAG-CGATTGCGTTTGCGGTTG 763
Query 716 TGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTACTTGAAGCAATTTT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTACTTGAAGCAATTTT 823
Query 776 TTGGGAGACAGTATGTGGAGTATGCGCAGAGAGTTCCTTCTGGTGTTCCTTTTGTAAACT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTGGGAGACAGTATGTGGAGTATGCGCAGAGAGTTCCTTCTGGTGTTCCTTTTGTAAACT 883
Query 836 GATCCTTAGATCAATTGTGAACATATACGAGAATGGTTTAATTACTTTTTACATAGAAAG 895
||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||
Sbjct 884 GATCCTTAGATCAATTGTGAACATATACGAGCATTGTTTGATTACCTTTTACATAGAAAA 943
Query 896 TTATGAAAGAGATATTGTTACTCATGT 922
||||||||||||| |||||||||||||
Sbjct 944 TTATGAAAGAGATGTTGTTACTCATGT 970
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TCCTGCAACGTTTCTTCTCATCGATTTTGACCGGAAGCTCCATGAATCAAACAAGACTTT 60
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 3 TCCTGCAACGTTTCTTCTCATCGATTTTGACCGGAAGCTCCTTGATTCAAACAAGACTTT 62
> AT5G23320.1 | Symbols: ATSTE14, STE14, ATSTE14A, ATPCM, ATICMTA,
ICMTA, STE14A | homolog of yeast STE14 A | chr5:7853368-7853961
FORWARD LENGTH=594
Length=594
Score = 455 bits (246), Expect = 4e-127
Identities = 492/608 (81%), Gaps = 28/608 (5%)
Strand=Plus/Plus
Query 244 ATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCTGGCGA-T 302
||||||||||| || ||||||||| | ||||||||||| |||||||| | || | | |
Sbjct 1 ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATC-ACT 59
Query 303 AATCTTCTTCCACACATCGGAATACATTCTCGCCGT-AGCCATTCATGGAGCATCGAGA- 360
|||||||||||||| ||| ||||||||||| ||| | | ||||||| |||||||| | |
Sbjct 60 AATCTTCTTCCACATATCCGAATACATTCTAGCCATCA-CCATTCACGGAGCATC-AAAC 117
Query 361 GTAACT-TTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATCTCGGT 419
|||||| || || || || ||||||| ||| || || |||||||||||||| | ||| |
Sbjct 118 GTAACTCTT-AGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCT 176
Query 420 CCTCGAGTACATAACCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGATCAG 479
||||| ||| |||| |||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 177 TCTCGAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAG 236
Query 480 CAA-TTTCGGTCTTATAATGATCATAC-TTGGAGAAATCATCCGAAAAATC-GCGATAAT 536
||| ||| || || ||||||||||| | |||| ||||||||| | || | ||||||||
Sbjct 237 CAACTTT-GGACTCATAATGATCAT-CGTTGGGGAAATCATCAGGAAGG-CAGCGATAAT 293
Query 537 CACAGCAGGTAGATCGTTCACACACCTTATAAAGATTCGCCGG-GAGGAGCATCATAGGC 595
||||| || ||||||||||| ||||| |||||||| | | || |||||||| |||
Sbjct 294 AACAGCGGGAAGATCGTTCACTCACCTCATAAAGAT-CAACTACGAAGAGCATCACGGGC 352
Query 596 TTGTGACGGAAGGAGTGTATCAAA-TCATGAGGCATCCGAGTTACTCCGGGTTTCTCATT 654
||||||| | || |||||| | | | ||||||||||| ||||||| ||| ||||||||
Sbjct 353 TTGTGACTCATGGTGTGTAT-AGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATC 411
Query 655 TGGTCTGT-GGGAACCCAAGTAATGCTGTGTAATCCAATTTCAGCCGTTGCGTTTGCGGT 713
||||| || |||| | ||||| ||||| ||||| || ||||||| |||||||| |||||
Sbjct 412 TGGTCGGTCGGGA-CACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGT 470
Query 714 TGTGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTA-CTTGAAGCAAT 772
||| ||||||||||| ||||| |||||||||| || |||||| ||| || ||| || |
Sbjct 471 TGTCGTGTGGCGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCT-GAATCAGT 529
Query 773 TTTTTGGGAG-ACAGTATGTGGAGTATGC-GCAGAGAGTT-CCTTCTGGTGTTCCTTTTG 829
|||||||| | ||||||| | |||||||| | |||| ||| ||| |||||||||| ||||
Sbjct 530 TTTTTGGG-GTACAGTATCTAGAGTATGCAG-AGAGTGTTGCCT-CTGGTGTTCCATTTG 586
Query 830 TAAACTGA 837
| ||||||
Sbjct 587 TGAACTGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5