BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487667
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08340.1 | Symbols: | Nucleotidylyl transferase superfamily... 1882 0.0
AT5G23330.1 | Symbols: | Nucleotidylyl transferase superfamily... 610 1e-173
> AT5G08340.1 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr5:2683832-2685636 FORWARD LENGTH=1205
Length=1205
Score = 1882 bits (1019), Expect = 0.0
Identities = 1145/1206 (95%), Gaps = 8/1206 (1%)
Strand=Plus/Plus
Query 1 GCTCCGGCGAAGAGTCTCCGTGTCCGTGAGAGCGAGCTTGTCCGATTTGTAATCACGAGA 60
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 7 GCTCCGGCGAAGAGTCT-C---TCCGTGAGAGCGAGCTTGTCCGATTTGTAAGCACGAGA 62
Query 61 AGGAACCATGTTGTGCGGAGGCTCACGTGTCTTGCAGCATTTGTCGGACCACAATCATCA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 63 CGGAACCATGTTGTGCGGAGGCTCACGTGTCTTGCAGCATTTGTCCGACCACAATCATCA 122
Query 121 TACTTCGATTGGTTTAGGATTAGGGTTTTGTGGTGCTAAGATTGTGCAGCTCTCTTCATT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TAATTCGATTGGTTTAGGATTAGGGTTTTGTGGTGCTAAGATTGTGCAGCTCTCTTCATT 182
Query 181 CTTTCTCAGGCCTTGTCAGGTTATGGCGAACAGTCATCATTTCAGCCATAAATTGCATCA 240
|||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| |||
Sbjct 183 CTTTCTCAGGCCTTCTCAGGCTATGGCGAAGAGTCATCATTTCAGCCGTAAATTGCGTCA 242
Query 241 GCGGATGATTTCTTCATTTGGGCCTCATTGCAGAAC-TCCCGGAGAAATCCCTATTCTTC 299
|||||||||||||||||||||| ||||||||||||| | |||||||| |||| |||||||
Sbjct 243 GCGGATGATTTCTTCATTTGGGTCTCATTGCAGAACAT-CCGGAGAAGTCCCAATTCTTC 301
Query 300 ACAATTGTTTCAGCCAACGAGAAGATGATACTGAGCTTCCAGTTGAAGGATTATCCCCAG 359
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 302 ACAATTGTTTCAGCCAACGAGAAGATGATCCTGAGCTTCCAGTTGAAGGGTTATCTCCAG 361
Query 360 TTTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGC 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGC 421
Query 420 TAACAATTCAAGCTTCAAGAATTGGAACTCCATATCTATTATCTTTCGTTGGAATGGCCG 479
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 422 TTACAATTCAAGCTTCAAGAATTGGAGCTCCATATCTATTATCTTTTGTTGGAATGGCCG 481
Query 480 AGGTACTTGGTTGGGAGCCTAGGGCTCCAATAGTGGCTAAATGTGATCGAAAAAGGGTGC 539
||||||||||||||||||| ||||| || |||||||| |||||||||||| |||||||||
Sbjct 482 AGGTACTTGGTTGGGAGCCCAGGGCACCTATAGTGGCCAAATGTGATCGACAAAGGGTGC 541
Query 540 TTACCTCTTGGGCCTCATATTGTGGAGACAGAGCACCGGAAGAGCACGAGATAGAATTTG 599
|||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct 542 TTACCTCTTGGGCCTCATATTGTGGAGACAGAGCGCCTGAAGAGTATGAGATAGAATTTG 601
Query 600 CCAGCGTGCGACATCTTACCCCACAACAGTTTGTGGAGAAGCTGTCAAAGGAGCTCAGAG 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 CCAGCGTGCGACATCTTACCCCACGACAGTTTGTGGAGAAGCTGTCAAAGGAGCTCAGAG 661
Query 660 TCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGATGCCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGATGCCT 721
Query 720 CTGAGCTAGTGAGACTGTGCGAGGAATATGGTATCACTGCTTACATCATAAACTCTGTGA 779
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 722 CTGAGCTAGTGAGACTGTGCGAGGAATGTGGTATCACTGCTTGCATCATAAACTCTGTGA 781
Query 780 TGGACAAGAAACAAGGCTCAGGAAAGAGAGACTCAGGGGACTCAAAAGACAGAGGGCAAG 839
|||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 782 TGGACATGAAGCAAGGCTCAGCAAAGAGAGACTCAGGGGACTCAAAAGATAGAGGGCAAG 841
Query 840 TCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGAAGTACGTATCAGAGC 899
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 842 TCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGAGGTACGTATCAGAGC 901
Query 900 TCCTTGGCAGGGCACATCGGCTTATCTTGAGAGTCAGAACCCAAGATATGCCGAGTGAAA 959
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 902 TCCTTGGCAGGGCACATCGTCTTATCTTGAGAGTCAGAACCCAAGATATGCCAAGTGAAA 961
Query 960 GGATGATTTCTGTCCCGAGATCATCAATACTTAATTTACCGCCAGGGAACGGTATTTATA 1019
||||||| || |||||||||||||||||||||||||| || ||||||| ||| |||||||
Sbjct 962 GGATGATCTCAGTCCCGAGATCATCAATACTTAATTTGCCACCAGGGATCGGAATTTATA 1021
Query 1020 AGGCATGTTTGCTTCTAGTCGGTGATGAGTCTTCAATTCCGTGTACCGTAGTTGTTGAGA 1079
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1022 AGGCATGTTTGCTTCTAGTTGGTGATGAGTCTTCAGTTCCGTGTACCGTAGTTGTTGATA 1081
Query 1080 CATCAAATATCCATGTAGAAACAAAGGAGGTACGACTCTGTAATTTAGATTGGTCTCAAG 1139
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1082 CATCAAATATCCATGTAGAAACAGAGGAGGTACGACTCTGTAATTTAGATTGGTCTCAAG 1141
Query 1140 AATTTAGACTCTTGAGTGTTGAGTTCGGTTGATTCAATCTTAGTGTTCCTATGAATTCAT 1199
||||| ||||| |||||||||||||||||||| ||||||||||| | | ||| |||||||
Sbjct 1142 AATTTCGACTCGTGAGTGTTGAGTTCGGTTGAGTCAATCTTAGT-T-CGTATAAATTCAT 1199
Query 1200 ATTTCT 1205
||||||
Sbjct 1200 ATTTCT 1205
> AT5G23330.1 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr5:7854129-7855813 FORWARD LENGTH=1205
Length=1205
Score = 610 bits (330), Expect = 1e-173
Identities = 764/969 (79%), Gaps = 47/969 (5%)
Strand=Plus/Plus
Query 235 GCATCAGCGGATGATTTCTTCATTTGGGCCTCATTGCAGAACTCCCGGAGAAATCCCTA- 293
||| |||||||| | || || ||| || |||| || | |||||| || ||||||| |
Sbjct 185 GCAGCAGCGGATAAAGTCGTCGTTTAGGTCTCACTGTAAAACTCCAAGAAAAATCCC-AG 243
Query 294 TTCTTCACAATTGTTTCAGCCAACGAGAAGATGATACTGAGCTTCCAGTTGAA-GGATTA 352
|| || | ||||||||||||| |||| ||| || |||||||| ||| |||| || ||
Sbjct 244 CTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGAAGGGCTT- 302
Query 353 TCCCCAGTTTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCAT 412
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 303 TCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCAT 362
Query 413 CGAGAGCTAACAATTCAAGCTTCAAGAATTGGAACTCCATATCTATTATC-TTTCGTTGG 471
|||||||| ||||||||||| |||||||||| ||||| |||||| | || ||| |||||
Sbjct 363 CGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTTT-GTTGG 421
Query 472 AATGGCCGAGGTACTTGGTTGGGAGCCTAGGGCTCCAATAGTGGCTAAATGTGATC-GAA 530
| |||| || |||||||||||| ||||||| || |||||||| || ||||| || | |||
Sbjct 422 ATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA-CAGAA 480
Query 531 AAAGGGTGCTTACCTCTTGGGCCTCATATTGTGG-AGACAGAGCACCGGAAGAGCACGAG 589
|| | |||||| |||||||||| || |||||||| | ||| |||||||| |||| |||
Sbjct 481 AACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTA-ACATAGCACCGGTAGAGTTTGAG 539
Query 590 ATAGAATTTGCCAGCGTGCGACATCTTACCCCACAACAGTTTGTGGAGAAGCTGTCAA-A 648
|| |||||||||||||| ||||| |||| ||||||||||||||| |||||| |||||| |
Sbjct 540 ATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTCAAGA 599
Query 649 GGAGCTCAGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTC 708
| |||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 600 G-AGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTC 658
Query 709 TGGTGATGCCTCTGAGCTAGTGAGACTGTGCGAGGAATATGGTATCA-CTGCTTACATCA 767
|||||| |||||||| || ||||| | ||| | || | |||||||| | ||||||||||
Sbjct 659 TGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGC-GCTTACATCA 717
Query 768 TAAACTCTGTGATGGACAAGAAACAAGGCTCAGGAAAGAGAGACTCAGG-GGACTCAAAA 826
| ||||| |||||||| ||||| |||| ||| | ||| | ||| ||| |||||||||
Sbjct 718 TTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAGG-AGGAGGACTCAAAG 776
Query 827 --GACAGA--G-GG-CAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGAT 880
|| ||| | || |||||||| || ||||| || || || ||||| || || ||||||
Sbjct 777 TCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGGAGAT 836
Query 881 ATGAAGTACGTATCAGAGCTCCTTGGCAGGGCACATC-GGCTTATCT-T-GAGAGTCA-G 936
||| ||| ||| |||||||||| ||||| |||| | || | |||| | | || || |
Sbjct 837 GTGAGGTATGTAACAGAGCTCCTCGGCAGACCACA-CAGGGTCATCTCTCG-GA--CAAG 892
Query 937 AACCCAAGATATGCCGAGTGAAAG-G--ATGATTTCTG-TCCCGAGATCATCAATACTTA 992
||| |||||| | |||| |||| | | ||| || | | | || ||| || |||| |
Sbjct 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTC-GCTTCAGACATCTTCGCTACTAA 951
Query 993 ATTTACCGCCAGGGAACGGTA-TTTATAAGGCATGTTTGCTTCTAGTCGGTGATGAGTCT 1051
||||||| |||||||| || | |||| || ||||| | |||| |||| |||||| || |
Sbjct 952 ATTTACCACCAGGGAATGG-AGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAG-CA 1009
Query 1052 TC-AATTCCGTGTACCGT-AGTTGTTGAGACATCAAATATCCATGTAGAAACAAAGGAGG 1109
|| |||| |||||| || | |||| || ||||| ||| || || |||||||| |||| |
Sbjct 1010 TCCAATTTCGTGTAAGGTTA-TTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAG 1068
Query 1110 TACGACTCTGTAATTTAGATTG-GTCTCAAGAATTT-AGACTCTTGAGTG-TTGAGTTCG 1166
||| || || | |||| | ||||||||| ||| | |||||| || | |||||||||
Sbjct 1069 AACGTTTCCACAACTCAGAT-GAGTCTCAAGAGTTTCA-ACTCTT-AGGGATTGAGTTCG 1125
Query 1167 GTTGATTCA 1175
||| |||||
Sbjct 1126 GTTAATTCA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5