BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487669
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08350.1 | Symbols: | GRAM domain-containing protein / ABA-... 1171 0.0
AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-... 409 3e-113
> AT5G08350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:2686245-2687251 REVERSE
LENGTH=917
Length=917
Score = 1171 bits (634), Expect = 0.0
Identities = 770/835 (92%), Gaps = 12/835 (1%)
Strand=Plus/Plus
Query 21 TTACTCCATTCTCTAAAGATGAACATGAGCAGAGTTGACCAACAAGTCATTAGATTTCCT 80
|||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 59 TTACTCAATCCTCTAAAGATGAACATGAGCAGAGTTGAACAACAAGTCATTAGATATCCG 118
Query 81 GCGGGGAAGACTACT-CCGTTTGGTTACTTACCTGATCCGGCCTCAATTAACAAGTTCCG 139
|| | ||| ||||| ||| | |||||||||||||||||||| ||| |||||||||||||
Sbjct 119 GCCGCAAAGGCTACTCCCG-TGGGTTACTTACCTGATCCGGCTTCATTTAACAAGTTCCG 177
Query 140 AGTTTCGGCTTCTTCCAAGAAATCTGAACAAAGCAACGGAAAATCGATTCTTAAAAGGAA 199
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 AGTTCCGGCTTCTTCCAAGAAATCTGAACAAAGCAACGTAAAATCGATTCTTAAAAGGAA 237
Query 200 GAAAACCGATGGTTTCACCAATGGAGCTAGAGACCAGAGCAAGCTAAAACCAAAGCTAAC 259
|||||| ||||| |||||||| |||| |||||||||||||||| ||| ||||||||||||
Sbjct 238 GAAAACTGATGGGTTCACCAACGGAGTTAGAGACCAGAGCAAGATAAGACCAAAGCTAAC 297
Query 260 TGAAACAGTGAAGAGAAAGCTATCTTTGGGCGCTAGAATTCTTCAGGTTGGAGGTTTAGA 319
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 CGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGAGGTTTAGA 357
Query 320 GAAGATCTTCAAGCGACTTTTTAGAGTCAGTGAAGGTGAGAAACTGTTCAAAATGTACCA 379
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 GAAGATCTTCAAGCGGCTCTTTAGAGTTAGTGAAGGTGAGAAACTGTTCAAAATGTACCA 417
Query 380 GTGTTACTTGTCGACAACCGCAGGTCCTATCGCCGGCCTTCTATTCATCTCGTCCAAGAA 439
||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 418 GTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATCTCTTCCAAGAA 477
Query 440 AATGGCGTTCTGCAGCGAGCGATCGATAAAGGTGGATTCCCCTCAAGGAGACATGATCCG 499
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 478 AATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGATTCCCCTCAAGGAGACATAATCCG 537
Query 500 GGTTCACTACAAAGTATCACTCCCCTTGTGCAAGATCGACAGAGTGAACCAGAGTCAGAA 559
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTTCACTACAAAGTATCAATCCCCTTGTGCAAGATCGACAGAGTGAACCAGAGTCAGAA 597
Query 560 CACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGACGGTTTTGACTTCTG 619
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 CACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATGGTTTTGACTTCTG 657
Query 620 GTTTATGGGATTCATGAGCTACCAGAAAGCTTTCAATTGCCTTGAGAAGGCTCTTTCTCT 679
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAGAAGGCTCTTTCACT 717
Query 680 GAGCTTTGAAGACAACAAAGAGCAATAAAGCCGCGATTTCAGAGGAGTTATGGAGTTTA- 738
|||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 718 GAGCTTTGAAGATAACAAAGAGCAATAAAGCCGCGATTTCTGTGGAACTATGGAGTTTAA 777
Query 739 CAAGAAATATTTCATTTCTTCTTTCCTTTCTTGATTGATCAGAAAATAGTCCTAGAAAGA 798
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 778 CAAGAAATATTTCATTTCTTCTTTCCTT----GATTGATCAGAAAATAGTCCTAGAAACA 833
Query 799 CAGAAAAT-T--ACTGTACAAACTCAAATTCTTTT--CTTTTCCATTGTAGACAA 848
| | | | ||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 834 CTCTATTTCTTTACTGTACAAACTCTATTTCTTTTTTCTTTTCCATTGTAGACAA 888
> AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7858253-7859387 REVERSE
LENGTH=1135
Length=1135
Score = 409 bits (221), Expect = 3e-113
Identities = 521/663 (79%), Gaps = 32/663 (5%)
Strand=Plus/Plus
Query 22 TACTCCATTCTCTAAAGATGAACA-TGAGCAGAGTTGACCAACAAGTCATTAG-ATTTCC 79
||||| || ||| |||||| ||| ||||||||||| |||||||||| ||| | ||||||
Sbjct 171 TACTCAATCCTC-CAAGATG-ACACTGAGCAGAGTTCACCAACAAGTTATT-GCATTTCC 227
Query 80 TGCGGGGAAGACT-ACTCCGTTTG-GTTACTTACCTGATCCGGCCTCAATTAACAAGTTC 137
||| | |||||| | | || || ||||||| ||||| || || || || ||||| |
Sbjct 228 TGCAGCCAAGACTGA-TACG-ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285
Query 138 CGAGTTTCGGCTTCTTCCAA-G----AAATCTGAACAAAGCAACGGAAAATCGATTCT-T 191
| | | | ||||||| || | | || || || | |||| ||||||||||| ||
Sbjct 286 CAAATCCCAACTTCTTCAAAGGTTTCATATTTG-AC-AGGCAAAGGAAAATCGATGCTGC 343
Query 192 AAAAGGAAGAAAACCGATGGTTTCACCAATGGAGCTAGAGACCA-GAGCAAGCTAAAACC 250
||| ||||||||||||| | ||||| || ||||||||||| || || ||| ||| |||
Sbjct 344 GAAA-GAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAACTAGGACC 401
Query 251 AAAGCTAACTGAAACAGTGAAGAGAAAGCTATCTTTGGGCGCT-AGAATTCTTCAGGTTG 309
|||||||||||||||||| |||||||||||||| ||||| ||| || || ||||| | |
Sbjct 402 AAAGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAG-ATCCTTCAAATGG 460
Query 310 GAGGTTTAGAGAAGATCTT-CAAGCGACT-TTTTAGAGTCAGTGAAGGTGAGAAACTGTT 367
|||| ||||||||||| || |||||||| || || ||| | || |||||||| ||
Sbjct 461 GAGGCTTAGAGAAGAT-TTATAAGCGACTCTTCAAG-GTCTGCGATCAAGAGAAACTCTT 518
Query 368 CAAAATGTACCAGTGTTACT-TGTCGACAACCGCAGGTCCTATCGCCGGCCTTCTATTCA 426
||| |||||| || || | | || ||||| |||||||| ||||| ||||| || ||||
Sbjct 519 CAAGGCGTACCAATGCTA-TCTATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCA 577
Query 427 TCTCGTCCAAGAAAATGGCGTTCTGCAGCGAGCGATCGATAAAGGTGGATTCCCCTCAAG 486
|||| || ||||| || || || ||||| || ||||||| ||||| | ||| |||||||
Sbjct 578 TCTCATCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTGCTTCTCCTCAAG 637
Query 487 GAG-ACATGA-TCCGGGTTCACTACAAAGTATCACTCCCCTTGTGCAAGATCGACAGAGT 544
||| | | | | |||||||||||||||| ||| |||| |||||||||||| | ||||
Sbjct 638 GAGTTC-TCAGT-AGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGT 695
Query 545 GAACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGA 604
|||||||||||||||||||||||| ||||| || |||||||| ||| ||||||| ||||
Sbjct 696 GAACCAGAGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGA 755
Query 605 CGGTTTTGACTTCTGGTTTATGGGATTCATGAGCTACCAGAAAGCTTTCAATTGCCTTGA 664
|| ||||||||||| ||||||||| |||||||||||||||||||||| || || ||
Sbjct 756 TAACTTCGACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGA 815
Query 665 GAA 667
|||
Sbjct 816 GAA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5