BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487672
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08380.1 | Symbols: AtAGAL1, AGAL1 | alpha-galactosidase 1 |... 2034 0.0
> AT5G08380.1 | Symbols: AtAGAL1, AGAL1 | alpha-galactosidase 1
| chr5:2694677-2697724 REVERSE LENGTH=1515
Length=1515
Score = 2034 bits (1101), Expect = 0.0
Identities = 1367/1487 (92%), Gaps = 51/1487 (3%)
Strand=Plus/Plus
Query 1 TTCTTCTACTACAAAGTACAAAGCCAGTGTTCGTCAAC-AGTCTTCTTCTCACTCTGTGA 59
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 28 TTCTTCTACTACAAAGTACAAAG-CAGTGTTCGTCAACTA-TCTTCTTCTCACTCTGT-- 83
Query 60 TTAAGCTTGTTTAGAGAGGTTTTGCAGAGATGGCGAGAACTAGAGCAATGGTGATAAAGA 119
|| | |||||||||| ||||||||||||| |||| || ||||||||||||||||||
Sbjct 84 TT----TCGTTTAGAGAGATTTTGCAGAGATGTCGAG-AC--GAGCAATGGTGATAAAGA 136
Query 120 TGTCAACACTTATGATACTGATTTCATTAATGGTGATGAATATGGTCGAGTCTTCGAGAT 179
|| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 137 TGCCAATACTTATGATACTGATTTCATCAATGGTGATGACGATGGTCGAGTCTTCGAGAT 196
Query 180 CAGTTAACAAGGTTAATAATGGTGACGATTCTGAGATCTTACGAAGACTCTTGCTCACTA 239
||||| || |||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 197 CAGTT---AA---TAATGGTCATGACGATTCTGAGATCTTACGAAGACACTTGCTCACTA 250
Query 240 ATGGCCTCGGCGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTCAGCTGCAACA 299
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 251 ATGGCCTCGGAGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTTAGCTGCAACA 310
Query 300 TAGATGAGAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACTACTGGCCTCTCTAAGC 359
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 311 TAGATGAAAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGC 370
Query 360 TTGGTTACAAATACGTTAACATCGATGATTGTTGGGCTGAAATTTCTCGTGACAGCAAGG 419
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 371 TTGGCTACAACTATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAGG 430
Query 420 GAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGTATTAAAGCGCTTGCTGATTATG 479
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 431 GAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGAATTAAAGCGGTTGCGGATTATG 490
Query 480 TTCATAGCAAGGGCCTTAAGCTCGGGATTTACTCAGATGCCGGGTATTTTACCTGCAGCA 539
|||| || || ||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 491 TTCACAGTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTATTTCACTTGCAGTA 550
Query 540 AAACCATGCCAGGTTCTTTAGGCTATGAGGAGCATGATGCCAAGACATTTGCAGAATGGG 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 551 AAACCATGCCAGGTTCTTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGG 610
Query 600 GAATTGATTACTTGAAGTATGACAACTGCAACAACGATGGCTCTAAACCGACTGTCAGGT 659
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 611 GAATTGATTACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAGGT 670
Query 660 ATCCGGTGATGACCCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCACTGTGTG 719
|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 671 ATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTG 730
Query 720 AATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCA 790
Query 780 CTAGTGACATCAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCT 839
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CTAATGACATTAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCT 850
Query 840 ACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATG 910
Query 900 GAGGAATGACGAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTC 959
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTC 970
Query 960 CTCTTCTACTTGGCTGTGACATAAGAAACATGACCAAGGAAACAGTGGAGATTGTCGCAA 1019
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 971 CTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATGGAGATTGTCGCCA 1030
Query 1020 ACAAGGAAGTCATAGCTATTAATCAAGAAAAGGAAAGTTCTTGTAGATCCACACGGTGT- 1078
||||||||||||| |||||||||||||| | | | ||| |||||
Sbjct 1031 ACAAGGAAGTCATTGCTATTAATCAAGA---------T-C--------C-ACATGGTGTT 1071
Query 1079 CAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGT 1131
Query 1139 TACAGAGTAGCTTTGCTTCTGCTGAACCGTGGACCATCACGAACTTCGATTACTGCTCTC 1198
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1132 TACAGAGTAGCTTTGCTTCTATTGAACCGTGGACCATCGCGAACTTCGATTACTGCTCTT 1191
Query 1199 TGGGATGATATTGAGATCCCTGCAAATAGCATTGTTGAAGCCAGAGATCTATGGCAGCAC 1258
||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1192 TGGGAGGATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGCAC 1251
Query 1259 AAGACATTGAAGCAAAAGTTTGTAGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGT 1318
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1252 CAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGT 1311
Query 1319 AAGTTGTATATTCTCAAACAGTCAAACCTGTTGCCT-AAAATACATAA--AGAGAGAGTT 1375
||||||||| ||||||||| | |||||||| ||||||||| | ||||||
Sbjct 1312 AAGTTGTATGTTCTCAAAC---C-----TGTTGCCTGAAAATACATGTGTATAGAGAG-- 1361
Query 1376 AATTAGTGTGGCTACGTTACGTTGTAATCTCCAATAATTCTGTAAAAACAATAAGGGTTC 1435
| ||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||
Sbjct 1362 AGTTAGTGTGGCTACGTCACGTTGTATTCTCCAGTTATTCTGTAAAAACAATAAGGGTTC 1421
Query 1436 GTCTCAAATTGGATCTCCACAGATATTCTCCAATAAATTGTTCTAAA 1482
|||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 1422 GTCTCAAATTAAATCTCCACAGATGTTCTCCAATAAATTGTTCGAAA 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5