BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487673

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08391.1 | Symbols:  | Protein of unknown function (DUF 3339...   387    5e-107


> AT5G08391.1 | Symbols:  | Protein of unknown function (DUF 3339) 
| chr5:2699301-2699784 FORWARD LENGTH=484
Length=484

 Score =  387 bits (209),  Expect = 5e-107
 Identities = 238/252 (94%), Gaps = 2/252 (1%)
 Strand=Plus/Plus

Query  1    catcatcatcatcatcaAGAAAGAGAGAAAATGTCAGATTGGGGACCGGTGCTAGTGACG  60
            ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  27   CATCATCCTTATCATCAAGAAAGAGAGAAAATGTCGGATTGGGGACCGGTGCTAGTTACG  86

Query  61   GTGATACTCTTCGTGATGCTCACGCCGGGGCTTCTGTTTCAGTTGCCGGGCCGAC-AAAG  119
            |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||
Sbjct  87   GTGATACTCTTCGTGATGCTTACGCCAGGGCTTCTGTTTCAGTTGCCGGGACGACAAAAG  146

Query  120  ATATGTTGAATTTGGTAATTTTCAGACAAGTGCTGTCTCCGTTATCGTCCATTCTCTTCT  179
             || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  147  -TACGTTGAGTTTGGTAATTTTCAGACAAGCGCTGTCTCCGTTATCGTCCATTCTCTTCT  205

Query  180  CTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  CTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTA  265

Query  240  ATTAATTAtttt  251
            ||| |||| |||
Sbjct  266  ATTCATTAGTTT  277



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5