BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487679
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08420.1 | Symbols: | RNA-binding KH domain-containing prot... 2019 0.0
> AT5G08420.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2713413-2716179 FORWARD LENGTH=1433
Length=1433
Score = 2019 bits (1093), Expect = 0.0
Identities = 1238/1306 (95%), Gaps = 18/1306 (1%)
Strand=Plus/Plus
Query 44 GGTCAAACATCATAAAGC-TTTGCCGCCGTCACTTATACGAATTAACTGACCTCTTCAAT 102
|||||||||||||||| | ||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct 85 GGTCAAACATCATAAACCTTTTGCCGCCGTCACTAATAGGAATTAACTGATCTCGTCAAT 144
Query 103 GGCGGAGGTAGAGGAGCTTGAGCACGAGGAGCAGAATATCGAGAAGAGGGTGAAGAAGAA 162
||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 145 GGCGGAGGTGGAGGAGATTGCGCACGAGGAGCAGAATATCGAGAAGAGGGAGAAGAAGAA 204
Query 163 AGGTAAACACGACAAGCCGAAACCATGGGACGATGACCCAAACATCGACCGTTGGACAAT 222
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 205 AGGTAAACACGAGAAGCCGAAGCCATGGGATGATGACCCAAACATCGACCGTTGGACAAT 264
Query 223 CGAGAAGTTTGATCCGGCATGGAACCCCACTGGTATGTTTGAAACCAGCTCCTTCTCCAC 282
||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 265 CGAGAAGTTTGATCCGGCATGGAACCCCACTGGTATGACTGAAACCAGCACGTTCTCAAC 324
Query 283 TCTCTTTCCTCAATACAGAGAGAAGTATCTTCAGGAGTCTTGGCCAAGAGTTGAATCTGC 342
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 325 ACTCTTTCCTCAATACAGAGAGAAGTATCTTCAGGAGTGTTGGCCTAGAGTTGAATCTGC 384
Query 343 TCTCAAGGAATACGGTGTCGCCTGCAAGCTCAACTTGGTTGAAGGTTCTATGACTGTTTG 402
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TCTTAAGGAGTACGGTGTCGCCTGCAAGCTCAACTTGGTTGAAGGTTCTATGACTGTTTC 444
Query 403 GACGACAAGGAAGACAAGAGATCCATACATCATTGTCAAAGCTAGGGATTTGATTAAGCT 462
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACGACGAGGAAGACAAGAGATCCATACATCATTGTCAAAGCTAGGGATTTGATTAAGCT 504
Query 463 TCTTTCCAGAAGTGTCCCTGCTCCTCAGGCTATTAAGATTCTCGAAGATGAGATGCAATG 522
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 505 TCTTTCCAGAAGTGTCCCTGCTCCTCAGGCAATTAAGATTCTCGAAGATGAGGTGCAATG 564
Query 523 TGATATCATCAAGATCGGTAACTTGGTTAGGAATAAGGAAAGATTTGTTAAAAGAAGGCA 582
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 565 TGATATCATCAAGATCGGTAACTTGGTTAGAAATAAGGAAAGATTTGTTAAAAGAAGGCA 624
Query 583 GCGGCTTGTGGGTCCTAATTCTTCTACCTTGAAGGCGCTGGAAATATTAACCAACTGTTA 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GCGGCTTGTGGGTCCTAATTCTTCTACCTTGAAGGCGCTGGAAATATTAACCAACTGTTA 684
Query 643 CATTCTAGTTCAGGGAAGTACTGTAGCCGCAATGGGTCCATTTAAAGGTCTCAAACAGCT 702
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 685 CATTCTAGTTCAGGGAAGTACTGTAGCCGCTATGGGTCCATTTAAAGGTCTCAAACAGCT 744
Query 703 CAGAAGGATTGTGGAAGACTGCGTACAGAATAAAATGCATCCTGTATACCATATAAAGAC 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 745 CAGAAGGATTGTGGAAGACTGCGTACAGAATATAATGCATCCTGTATACCATATAAAGAC 804
Query 763 TCTCATGATGAAAAAGGAACTGGAGAAGGATCCAGCTCTTGCAAACGAAAGCTGGGATAG 822
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 805 TCTCATGATGAAAAAAGAACTGGAGAAGGATCCAGCTCTTGCAAATGAAAGCTGGGATAG 864
Query 823 GTTTCTTCCCACATTCAGGAAGAAAAATGTTAAGCAAAAGAAACCCAAAAGCAAGGAGAA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GTTTCTTCCCACATTCAGGAAGAAAAATGTTAAGCAAAAGAAACCCAAAAGCAAGGAGAA 924
Query 883 GAAGCCATACACACCTTTCCCACCCCCTCAACCACCTAGCAAGATTGATATGCAGTTGGA 942
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 925 GAAGCCATACACACCTTTCCCACCTCCTCAACCACCTAGCAAGATTGATATGCAGTTGGA 984
Query 943 GTCTGGAGAATACTTTATGAGTGACaaaaagaagtcagagaaaaaatggcaggagaagca 1002
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 985 GTCTGGAGAATACTTCATGAGTGATAAAAAGAAGTCAGAGAAAAAATGGCAGGAGAAGCA 1044
Query 1003 agagaaacagacagagaagagtactgagaacaaaagaaagagagaTGCCTCATTCCTCCC 1062
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1045 AGAGAAACAGTCAGAGAAGAGCACAGAGAACAAAAGAAAGAGAGATGCCTCATTCCTCCC 1104
Query 1063 ACCTGAGGAGCCTATGAACAACAATAGCAAGGCAAACAATTCAGAGGATGGAAAGAATGA 1122
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1105 ACCTGAGGAGCCTATGAACAACAATAGCAACGCAAACAAATCAGAGGATGGAAAGAATGA 1164
Query 1123 CATAACCGAGCTAACACAAT-CCTTGAAGAGCAAGACAAAGGAGTTTAAAAAGCAGAAAA 1181
||||||||| ||||| ||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1165 TATAACCGAGTTAACA-AATTCCTTGAAGAGCAAGACGAAGGAGTTGAAAAAGCAGAAAA 1223
Query 1182 AGACACACGAGAGAGTGAATGCAGAGGAGTATATTGCTGGTCCATCTTCTA-T--TGATA 1238
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1224 AGACACACGAGAGAGTGAATGCGGAGGAGTATATTGCTGGTCCATCTTCTTCTGCTGATA 1283
Query 1239 AACCTGCCAAGGAGAAGTCCAAAAAGAATAGAGATTAATTCTTAAA-CCTGttttttttt 1297
|| || ||||| | | ||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 1284 AATCTTCCAAG-A-A-GTCCAAAAAGATTAGAGATTAATTCT-AAATCCTGTTTTTTTTT 1339
Query 1298 AAAAAGA-----GA-A-AAAAGATTGAAACTTATCTTTGCTCAAAA 1336
||||| | || | ||||||||||||||||||| |||||||||
Sbjct 1340 AAAAAAAAAAAAGAGAGAAAAGATTGAAACTTATCTATGCTCAAAA 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5