BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487680
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08430.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:27... 1687 0.0
> AT5G08430.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:2716700-2720212
FORWARD LENGTH=2053
Length=2053
Score = 1687 bits (913), Expect = 0.0
Identities = 1071/1144 (94%), Gaps = 24/1144 (2%)
Strand=Plus/Plus
Query 1 TGTCGGGTTTTTTGTGCTTTCCGTCAATTTCTTTTCGGAGAGCGACTAATTTCGACGATT 60
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2 TGTCGGGTTCTTTGTGCTTTCCGTCAATTTCTTCTCGGAGAGCGACTAATTTCGACGATT 61
Query 61 AGCTCGTTGG-GGTTTTCTTCCAATTCGTGCATTTCGTCAAATTAACAGGTTTTTGAAGG 119
|||||| ||| |||||||| ||||||||||||||||||| ||||||||| |||| ||||
Sbjct 62 AGCTCGGTGGCTGTTTTCTTTCAATTCGTGCATTTCGTCAGATTAACAGG-TTTT-AAGG 119
Query 120 GAAATTTCTTCCACGCGACGACttttttttGGTAACTGGAAAAT-AAGAATCAGTAACAG 178
|||||||||||||||||||||||||||||| || ||| | |||||||||||| |
Sbjct 120 GAAATTTCTTCCACGCGACGACTTTTTTTT-GT--TTGG---TTCAAGAATCAGTAA-A- 171
Query 179 TACGGGTTCGCATTCCACTGCAGTAGTAGGGTTTATAGTTTCTTAAGCTAGAGTTGTGAG 238
| | ||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 172 T--GTATTCGCCTTTCATTGCAGTAGTAGGGTTTATAGTTTCTTAAGCTAGAGGTGTGAG 229
Query 239 TTTTGTT-TT-T-CTTAGGTTTTGAGAGAGAAATTTTGGGTTGTAATGGGGGATATAACT 295
|||| || || | |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 230 TTTTTTTCTTCTCCTTAGGTTTTGAGATATAAATTTTGGGTTGTAATGGGGGATATAACT 289
Query 296 TGGGTTGAGGAGGGTAATGGTGGCTCTGCGATTTCTTCGAGGAAAAGGAAGGCGAGACCT 355
|||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 290 TGGGTTGAAGAGGGTAA---TGGCTCTGCGACTTCTTCGAGGAAAAGGAAAGCGAGACCT 346
Query 356 AAACGATTCGAATTTGTAGGATGGGGTTCGAGACAACTCATTGAGTTTCTCA-AATCACT 414
|||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||
Sbjct 347 AAACGATTCGAATTTGTAGGATGGGGTTCGAGACAACTCATTGAGTTTCT-ACACTCTCT 405
Query 415 TGGTAAAGATACTTCAGAAATGATCTCTCGTTATGATGTTAGTGACACTATTGCTAGGTA 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 406 TGGTAAAGATACTTCAGAAATGATCTCTCGTTATGATGTTAGTGACACTATTGCTAAGTA 465
Query 475 TATTGCAAAGGAAGGTCTTTTAGATCCTTCCAATAAGAAGAAAGTTGTGTGCGACCAAAG 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 466 TATTTCAAAGGAAGGTCTTTTAGATCCTTCCAATAAGAAGAAAGTTGTGTGCGACAAAAG 525
Query 535 ATTGCTTTCT-CTTTTCGGGAGTCGGACGATTTTCAGAATGAAAGTCTATGATCTCCTTG 593
|||| ||| | |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 526 ATTGGTTT-TGCTTTTCGGGACTAGGACGATTTTCAGAATGAAAGTCTATGATCTCCTTG 584
Query 594 AAAAGCATTATAAAGAGAACCAGGATGATTCTGACTTTGATTTTCTCTACGAGGATGAGC 653
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AAAAGCATTACAAAGAGAATCAGGATGATTCTGACTTTGATTTTCTCTACGAGGATGAGC 644
Query 654 CGCAGATCATTTCTCATTCGGAGAAGATAGCTAAACGGACAAGTAAGGTTGTTAAGAAAC 713
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CGCAGATTATTTGTCATTCGGAGAAGATAGCTAAACGGACAAGTAAGGTTGTTAAGAAAC 704
Query 714 CTAGAGGTACTTTTGCTGCTATTGTGAGTGATAATATCAAGCTTCTCTACTTGAGAAAGA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CTAGAGGTACTTTTGCTGCTATTGTGAGTGATAATATCAAGCTTCTCTACTTGAGAAAGA 764
Query 774 GCTTAGTCCAGGAATTGGTGAAGTCTCCTGATACCTTTGAGAGTAAAATGTTGGGAAGTT 833
|||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 765 GCTTAGTCCAGGAACTGCTCAAGTCTCCTGATACCTTTGAGGGTAAAATGTTGGGAAGTT 824
Query 834 TTGTGAGAATCAAGTCCGACCCTAATGATTATCTTCAGAAGTACCCTTATCAGCTTGTTC 893
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTGTGAGGATCAAGTCTGACCCTAATGATTATCTTCAGAAGTACCCTTATCAGCTTGTTC 884
Query 894 AGGTGACAGGCGTGAAGAAGGAACCTGGGACTGATGATTTTCTTCTTCAGGTTACAAATT 953
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 AGGTGACAGGCGTGAAGAAGGAACATGGGACTGATGATTTTCTTCTTCAGGTTACAAATT 944
Query 954 ATGTGAAAGATGTTTCTATATCTGTGCTGTCTGATGATAATTTCTCCCAGGAGGAATGTG 1013
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 945 ATGTGAAAGATGTTTCTATATCTGTGCTATCTGATGATAATTTCTCCCAGGAGGAATGTG 1004
Query 1014 AAGATTTACATCAGCGAATAAAGAACGGACTTCTTAAGAAGCCCACAATTGTGGAGATGG 1073
|||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1005 AAGATTTACATCAGAGAATAAAGAACGGACTTCTTAAGAAGCCTACTATTGTGGAGATGG 1064
Query 1074 AAGAAAAAGCTAGAAGTTTACATGAAGATCAGACAAAACACTGGCTTGGAAGAGAAATTG 1133
|||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1065 AAGAAAAAGCTAAAAAATTACATAAAGATCAAACAAAACACTGGCTTGGAAGAGAAATTG 1124
Query 1134 TATT 1137
|||
Sbjct 1125 AATT 1128
Score = 1177 bits (637), Expect = 0.0
Identities = 803/879 (91%), Gaps = 28/879 (3%)
Strand=Plus/Plus
Query 1150 GCTGTCCGAGTACCTGGAGAAGCGGGAGCTTCTTCAAAATCCAGAAGAACAGGCCCGTCT 1209
||||||||||||||| || ||| |||||||||||||||||||||| ||||||||| | ||
Sbjct 1177 GCTGTCCGAGTACCTAGATAAGAGGGAGCTTCTTCAAAATCCAGATGAACAGGCCAGGCT 1236
Query 1210 ACTCCGCGAAGTTCCAGAAGTTATTGGAGAGGATA-TTGTACCAAACCCTGAAGTGTCGT 1268
||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||
Sbjct 1237 ACTCCGCGAAGTTCCAGAAGTTATTGGAGAGGA-ACTTGTACAAAACCCTGAAGTTTCGT 1295
Query 1269 CCCCTGAGGCTCATAAAAGTGACAACGAGCAACGATTGAGTGAATCTCCATTATCGTGCA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CCCCTGAGGCTCATAAAAGTGACAACGAGCAACGATTGAGTGAATCTCCATTATCGTGCA 1355
Query 1329 TCCAAGAAACCCCAGAAGTTCGCAACCTCTTTGGTGGAGAAGATCAACAATTTAATGATG 1388
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1356 TCCATGAAACCCCAGAAGCTCGCAACCTCTTTGGTGGAGAAGATCAACAATTTAATAACG 1415
Query 1389 GGTATCTGATATCAAACCCCAGCACAACTCTGGGAATCACGTCTTATGCTAC-G--ATTA 1445
| ||| |||| |||||||||| |||||||| ||||||||| |||| |||||| | ||||
Sbjct 1416 GCTATGTGATGTCAAACCCCATCACAACTCCGGGAATCACATCTTGTGCTACGGAAATTA 1475
Query 1446 ACGAGGGATTACCAGCATGGATTGCTTCTGCAGGTGATGAATATCTTCGTGGAGATGTAG 1505
|| ||||||| ||| ||||||||||||||||||||| ||| ||||||| || ||||||||
Sbjct 1476 ACAAGGGATTGCCAACATGGATTGCTTCTGCAGGTGCTGAGTATCTTCATGTAGATGTAG 1535
Query 1506 AGCAGCCAGCAAATGGCATCATTGGAGGAGAGACG-C--C------GTCTAAAGTTTCCC 1556
||||||||||||||||||||||||||||||||||| | | |||||||||||| |
Sbjct 1536 AGCAGCCAGCAAATGGCATCATTGGAGGAGAGACGCCGACTGAAGAGTCTAAAGTTTCTC 1595
Query 1557 AGCTTCAGTCAAGTATACCTGTAATTAATGTCAACAATGGATCTCAAGTTCAACCAAATC 1616
||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||
Sbjct 1596 AGCTTCAGTCAAGTATACCAGTAAATAATGTCGACAACGGATCTCAAGTTCAACCAAATC 1655
Query 1617 CATCAGAGGTAATTGAACTGAGCGATGATGATGAAGATGACAACGATGATGGAGAGACCC 1676
||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1656 CATCAGAAGTAATCGAACTGAGCGATGATGATGAAGATGACAACGGTGATGGAGAGACCC 1715
Query 1677 TGGACCCTAAAGTTGAAGATGTCCAGGTTCTGTCTTATGATAAAGAAAAGTTAAACTGGT 1736
||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 1716 TGGACCCTAAAGTTGAAGACGTCCGGGTTCTGTCTTATGATAAAGAGAAGTTAAACTGGT 1775
Query 1737 TATACAAAGATCCTCAGGGTCTTGTACAGGGACCATTCTCGCTCACACAACTCAAAGCTT 1796
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1776 TATACAAAGATCCTCAGGGTCTTGTACAGGGACCATTCTCTCTCACACAACTCAAAGCTT 1835
Query 1797 GGAGAGACGCAGAGTACTTCACCAAACACTTCAGGGTTTGGATGACAGGAGAAAGCATGG 1856
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1836 GGAGCGACGCAGAGTATTTCACCAAACAGTTCAGGGTTTGGATGACAGGAGAAAGCATGG 1895
Query 1857 AATCCGCAGTTTTACTAACCGATGTTCTTCGTCG-GTCTAACTAATGCAGTA-----AA- 1909
||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 1896 AATCCGCAGTTTTACTAACCGATGTTCTTCGTCTAGTGTAACTAATGCAATACTCTGAAG 1955
Query 1910 -CTATTAGATTCAGTCAAAAGTGGTTTCAGTATTCTGTT-T-GTCA-T--TTATCTTCAA 1963
||||||||||||||||||||||||||||||| |||||| | ||| | ||||||||||
Sbjct 1956 ACTATTAGATTCAGTCAAAAGTGGTTTCAGTAATCTGTTATCGTCTGTCATTATCTTCAA 2015
Query 1964 GTTGCAGTAGGGTTTTGCTCCTCCTTTTAAGTAAACAGC 2002
|||||||||| |||||||||||||||| ||||||||||
Sbjct 2016 ATTGCAGTAGG-TTTTGCTCCTCCTTTTCAGTAAACAGC 2053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99196276920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5