BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487684
Length=3039
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone d... 4663 0.0
> AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444
Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria
- 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886;
Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
| chr5:2727821-2732888 REVERSE LENGTH=3087
Length=3087
Score = 4663 bits (2525), Expect = 0.0
Identities = 2788/2915 (96%), Gaps = 17/2915 (1%)
Strand=Plus/Plus
Query 137 CAGTGGATTTTTGGGTT-TGTGAATTTTGGAGTGATGAGTGGTGTTCCAAAGAGATCTCA 195
||||| |||| |||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 149 CAGTGAATTTCTGGGTTAT-TGAATTTGGGAGTGATGAGTGGTGTTCCAAAGAGATCTCA 207
Query 196 CGAAGAGGGTGTTACTCATCCATCTTCTTCTTCTTCAGCACCAAAATACCCTCACGAGGA 255
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 208 CGAAGAGGGTGTTACTCATCCATCTTCTTCTTCATCAGTAGCAAAATACCCTCACGAGGA 267
Query 256 TTCTGGATCTTACCCTAAATCGCCGCATCAGCCTGTTACGCCACCACCGGCTCAGGTtca 315
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 268 TTCTGGATCTTACCCTAAATCGCCGCATCAGCCTGTGACGCCACCACCGGCTCAGGTTCA 327
Query 316 tcatcaccatcaacaacaaccccatcagcatccccaatctcaatctcaacctcaacctca 375
|||| ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 328 TCATAACCAT---CAACAGCCCCATCAGCATCCCCAATCTCAATCTCAATCTCAGCCTCA 384
Query 376 acctcaacct-ca--c-c-tccacacgct--tcctcatccccactctcattcaccAC-T- 426
||||| |||| || | | ||| ||| || | ||||| | ||||| |||||||||| |
Sbjct 385 ACCTC-ACCTCCAGGCGCTTCCTCACCCTCATTCTCATTCTCACTCCCATTCACCACTTG 443
Query 427 -TGCTGCTGCTTCTGCTTCTGCTGCTTATGAGGTTGAATCTAGAACGGTGGTTAAGGTTG 485
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 444 CTGCTGCTGCTTCTGCTTCTGCTCCTTATGAGGTTGAATCTAGAACGGTGGTTAAGGTTG 503
Query 486 CGAGAAGTGAGCCTAGAGATGGAGAGAGACGCTCTCCTCTCCCTCTTGTCTATCGGTCTC 545
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 504 CGAGAAGCGAGCCTAGAGATGGAGAGAGACGCTCTCCTCTGCCTCTTGTCTATCGGTCTC 563
Query 546 CGTCCCTGCCCACTACTGTTTCTTCTAGTGATCCTCATTTGACTCACGCCCCTGTGCCCA 605
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 564 CGTCGCTGCCCACAACTGTTTCTTCTAGTGATCCTCATTTGACTCACGCCCCTGTGCCGA 623
Query 606 TGGAACCGAGAGAAGGTACTAAGGATGGCAGGGAAATTAGGGTTGAGAACAGAGAAAGTA 665
|||| |||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 624 TGGAGCCGAGAGATGGTGCTAAGGATGGCAGGGAAATTAGGGTTGAGAGTAGAGAAAATA 683
Query 666 GGAGTGATGGAAGGGAGATTTATGGTGAGACAAAGAGAGAGATTCAGGGTCCTAAGAGTG 725
|||||||||| || ||||| ||||||||||||||||| |||||||||||||||||| | |
Sbjct 684 GGAGTGATGGGAGAGAGATATATGGTGAGACAAAGAGGGAGATTCAGGGTCCTAAGGGAG 743
Query 726 ACAGAGATGTGAAGTTTGATAGATCAGTAGACGATTTTACCGGAAAAGGTAATACCGGAA 785
||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||||
Sbjct 744 ACAGAGATGTGAAATTTGAGAGATCAGTAGATGACTTTAGCGGAAAAGGTAATACCGGAA 803
Query 786 GCTATTCTAGGAATGATGGGAGAGAGATGTATGGTGAGACTAAGAGGGAGATTCAGGGTC 845
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GCTATACTAGGAATGATGGGAGAGAGATGTATGGTGAGACTAAGAGGGAGATTCAGGGTC 863
Query 846 CTAAGAGTGACAGGGATGCCAAGTTTGAGCGTCCAGGGGATGATTTTAGCGGAAAAAGTA 905
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 864 CTAAGAGTGACAGGGATGCCAAGTTTGAGCGTCCAGGGGATGATTTTAGCGGGAAAAGTA 923
Query 906 ATACCGGTAGCTATACGAGGGATACGAAATTTGATAGGGAGAATCAGAATTATAATGAAC 965
|| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 924 ATGCCGGTAGCTATACTAGGGATACAAAATTTGATAGGGAGAATCAAAATTATAATGAAC 983
Query 966 AAAAGGCGGAGATTAAGATGGAAAAGGACGGGCATGCTCACTTGGCTTGGAAAGAGCAGA 1025
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 984 AAAAGGGGGAGATTAAGATGGAAAAGGAAGGGCATGCTCACTTGGCTTGGAAAGAGCAGA 1043
Query 1026 AGGATTACCCTAGAGGCAAGAGAGTTGCTGAAGGTTCGACTGCAAATGTGGATCCGTGGG 1085
||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1044 AGGATTACCATAGAGGGAAGAGAGTTGCTGAAGGTTCGACTGCAAATGTGGACCCGTGGG 1103
Query 1086 TTGTATCCCGCGGTAATCCGCAAGGCCCAACTGAGGTTGAGCCTAAGGATTTCTCCGCGC 1145
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||
Sbjct 1104 TTGTATCCCGCGGTAATCCGCAAGGCCCAACTGAGGTTGGGCCTAAAGATCTCTCTGCGC 1163
Query 1146 CTGTGGAGGGGCCCCATTTAGAAGGACGTGAAACTGTCGGAGAAAACAAGGTTGATGCAA 1205
||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1164 CTGTGGAGGGGTCTCATTTGGAAGGACGTGAAACCGTCGGAGAAAACAAGGTTGATGCCA 1223
Query 1206 AAAATGAAGATAGATTTAAGGACAAAGATAAGAAAAGAAAAGAGTTAAAGCATCGAGAAT 1265
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1224 AAAACGAAGATAGATTTAAGGAAAAAGATAAGAAAAGAAAAGAGTTAAAGCATCGAGAAT 1283
Query 1266 GGGGGGACCGAGATAAGGATAGAAATGACCGTCGAGGATCCGTGCTTATTGGTAGTGTCA 1325
||||||||||||| |||||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct 1284 GGGGGGACCGAGACAAGGATAGAAATGACCGTCGAGTATCTGTGCTTGTTGGTAGTGTCA 1343
Query 1326 TGAGTGAACCCAAAGAGATTGGAAGAGACGAAAGAGAATCCGATAGGTGGGAACGGGAGA 1385
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1344 TGAGTGAACCCAAAGAGATTGGAAGAGAAGAAAGGGAATCCGATAGGTGGGAACGGGAGA 1403
Query 1386 GGATGGAGCAGAAAGATCGAGAAAGGAATAAAGAGAAAGATAAAGATCATATCAAAAGAG 1445
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1404 GGATGGAGCAGAAAGATCGAGAAAGAAATAAAGAGAAAGATAAAGATCATATCAAAAGAG 1463
Query 1446 AGCCAAGGACTGGTGCTGAGAAAGAGATCTCACAGAACGAGAAAGAGTTGGGAGAAGCAT 1505
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1464 AGCCAAGGACTGGTGCTGAGAAAGAGATCTCGCAGAACGAGAAAGAGCTGGGAGAAGCAT 1523
Query 1506 CTGCCAAACCATCAGAGCAGGAATATGTGGCACCAGAGCAGAAGAAGCAGAACGAACCGG 1565
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CTGCCAAACCCTCAGAGCAGGAATATGTGGCACCAGAGCAGAAGAAGCAGAACGAACCGG 1583
Query 1566 ATAATTGGGAAAAAGACGAAAGAGAATCAAAGGAAAAAAGGAGAGAGAGGGATGGTGATT 1625
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1584 ATAATTGTGAAAAAGACGAAAGAGAAACAAAGGAAAAAAGGAGAGAGAGGGATGGTGATT 1643
Query 1626 CAGAGGCAGAAAGAGCTGAAAAGCGCAGCAGAATCAGTGAAAAAGAATCTGAAGATGGGT 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 CAGAGGCAGAAAGAGCTGAAAAGCGCAGCAGAATCAGTGAAAAAGAATCTGAAGATGGGT 1703
Query 1686 GTTTGGAGGGTGAAGGAGCTACTGAGAGGGAAAAGGATGCCTTCAATTATGGAGTTCAGC 1745
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1704 GTTTAGAGGGTGAAGGAGCTACCGAGAGGGAAAAGGATGCCTTCAATTATGGGGTTCAGC 1763
Query 1746 AGCGGAAGAGAGCGCTGAGACCGAGAGGCAGCCCACAAACCACAAACCGCGACCATGTCC 1805
|| |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 1764 AGAGGAAGAGAGCGCTGAGACCGAGAGGCAGCCCACAAACCACTAATCGCGACAATGTCC 1823
Query 1806 ACTCACGGAGTCAGGACAACGAAGGAGTACAAGGCAAGTCAGAGGTGTCGATTGTTGTTT 1865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 GCTCACGGAGTCAGGACAACGAAGGAGTACAAGGCAAGTCAGAGGTGTCGATTGTTGTTT 1883
Query 1866 ACAAAGTTGGCGAATGTATGCAAGAACTGATTAAATTGTGGAAAGAATATGATTTGTCTC 1925
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1884 ACAAAGTTGGCGAATGTATGCAAGAACTGATTAAGTTGTGGAAAGAATATGATTTGTCTC 1943
Query 1926 ATCCTGATAAAAGCGGTGATTTTGCAAATAATGGCCCCACTCTTGAAGTTAGGATTCCAG 1985
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1944 ATCCTGATAAAAGCGGTGATTTCGCTAATAATGGCCCCACTCTTGAAGTTAGGATTCCAG 2003
Query 1986 CTGAGCATGTTACTGCTACAAATCGCCAAGTAAGAGGTGGCCAGCTATGGGGAACAGATA 2045
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2004 CTGAGCATGTTACTGCTACAAATCGCCAAGTAAGAGGTGGCCAACTATGGGGAACAGATA 2063
Query 2046 TATACACAGACGATTCCGATCTTGTTGCTGTTCTCATGCATACAGGTTACTGTCGTCCCA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 TATACACAGACGATTCCGATCTTGTTGCTGTTCTCATGCATACAGGTTACTGTCGTCCCA 2123
Query 2106 CAGCTTCTCCTCCTCCACCGACAATGCAAGAGCTGCGCACTACTATTAGAGTCTTGCCGT 2165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 CAGCTTCTCCTCCTCCACCGACAATGCAAGAGCTGCGCACTACTATTAGAGTCTTGCCGT 2183
Query 2166 CACAAGATTACTACACCTCCAAGCTAAGGAATAATGTCCGTTCTCGAGCATGGGGAGCTG 2225
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2184 CACAAGATTACTACACCTCCAAGCTAAGGAACAATGTCCGTTCTCGAGCATGGGGAGCTG 2243
Query 2226 GAATCGGATGCAGTTACAGAGTTGAGCGGTGCTATATACTGAAGAAAGGAGGTGGGACTA 2285
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 GAATCGGATGCAGTTATAGAGTTGAGCGGTGCTATATACTGAAGAAAGGAGGTGGGACTA 2303
Query 2286 TTGAACTGGAACCTTCTCTTACACACTCCTCAACTGTGGAGCCAACACTTGCACCAATGG 2345
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2304 TTGAACTGGAACCTTCCCTTACACACTCCTCAACTGTGGAGCCAACTCTTGCACCAATGG 2363
Query 2346 CTGTTGAAAGATCTATGACCACCAGAGCTGCAGCTTCGAATGCTCTGCGGCAACAAAGGT 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 CTGTTGAAAGATCTATGACCACCAGAGCTGCAGCTTCGAATGCTCTGCGGCAACAAAGGT 2423
Query 2406 TTGTACGAGAAGTCACAATACAATACAATCTCTGCAATGAACCTTGGATCAAATATAGCA 2465
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2424 TTGTACGAGAAGTCACAATACAATACAATCTCTGCAATGAACCTTGGATTAAATATAGCA 2483
Query 2466 TAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCTCTGCCCGCTTGAAGA 2525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2484 TAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCTCTGCCCGCTTGAAGA 2543
Query 2526 AAGGAGAAGTTTTGTACTTAGAAACTCATTCATGCAGGTATGAGCTCTGTTTCGCTGGAG 2585
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2544 AAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGGTATGAGCTCTGTTTCGCAGGAG 2603
Query 2586 AGAAAACCATCAAAGCAATCCAAGCGTCTCAACAACAATCATCACATGAAGCTATGGAGA 2645
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2604 AGAAGACCATCAAAGCAATCCAAGCCTCACAACAACAATCATCACATGAAGCTATGGAGA 2663
Query 2646 CAGATAATAATAATAACAAGTCACAGAACCATCTGACAAACGGTGACAAAACAGATTCAG 2705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 CAGATAATAATAATAACAAGTCACAGAACCATCTGACAAACGGTGACAAAACAGATTCAG 2723
Query 2706 ACAACAGTTTAATCGATGTTTTCCGTTGGTCACGCTGTAAGAAACCTCTCCCGCAGAAGC 2765
||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 2724 ACAACAGTTTAATTGATGTTTTCCGCTGGTCACGATGTAAGAAACCTCTCCCACAGAAGC 2783
Query 2766 TTATGCGGTCTATCGGGATTCCACTCCCAGCAGATCATATCGAGGTGTTGGAGGAGAATC 2825
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2784 TTATGCGGTCTATCGGGTTTCCACTCCCAGCAGATCATATCGAGGTGTTGGAGGAGAATC 2843
Query 2826 TTGATTGGGAAGATGTACAGTGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAGTACA 2885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2844 TTGATTGGGAAGATGTACAGTGGTCACAAACTGGTGTTTGGATTGCTGGAAAAGAGTACA 2903
Query 2886 CACTTGCTCGTGTTCATTTTCTCTCGCCCAACTaaaaaaaaCCTTTCATGCATTGCTTTT 2945
| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 2904 CTCTTGCTCGTGTTCATTTTCTCTCCCCCAACTAAAAAAAACCTTTCATGCTTTGCTTCT 2963
Query 2946 TTCTTACAAAACTTTTTATATTTTATTTATG-ATTAGAGACTACAGTTACTTTGTCTTGT 3004
|||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |
Sbjct 2964 ATCTTACAAAACTTTTTATATTTTATTTATGGATTAGAGACTACAGTTACTTTGGCCTAT 3023
Query 3005 CTTGTCTTGTGTTCTTCTTCCTTGTAACATTTATT 3039
|||||||||||| ||||||||||||||||||||||
Sbjct 3024 CTTGTCTTGTGTACTTCTTCCTTGTAACATTTATT 3058
Score = 159 bits (86), Expect = 1e-37
Identities = 96/100 (96%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 1 AGAGAGGCAAAAGTCCGAATCCAGTTTGGCATTTAT-ACTTCCCGGCGGCAAAAAATCCA 59
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 51 AGAGAGGCAAAAGTCCGAATCCAGTTTGCCATTTATTACTTCCCGGCGGCAAAA--TCCA 108
Query 60 AAAGGGTTTGCTTCTTCGTGCTCTGCTTCAGTTTCAATTG 99
||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AAAGGGTTTGCTTCTTCGTGCTCTGCTTCAGTTTCAATTG 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151102832316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5