BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487685
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1827 0.0
> AT5G08460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:2733220-2735455 FORWARD LENGTH=1262
Length=1262
Score = 1827 bits (989), Expect = 0.0
Identities = 1119/1183 (95%), Gaps = 3/1183 (0%)
Strand=Plus/Plus
Query 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCATAGTACAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCACAGTTCAA 60
Query 61 TCATTAGTACTTGTTCCATGGTTTCTAGTAGTAGCAGTACTCGCTGGTGGAGAAGACTCA 120
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 ACATTAGTACTTGTTCCATGGTTTCTAGTAGTATTTGTACTCGCCGGTGGAGAAGACTCA 120
Query 121 TCC--GA-TACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCATTGGTGGACAAC 177
||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 TCCGAGACGACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCTTTGGTGGATAAC 180
Query 178 GGAAACAATAACCACTTGAACTCACTAGCTAGGTCCAACTATCTTCCTTACGGCATTGAT 237
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 181 GGAAACAATAACCACTTGAACTCACTGGCTAGGTCCAACTATCTCCCTTACGGCATCGAT 240
Query 238 TTCGCTGGAAATCAACCCACCGGTCGGTTCTCTAACGGCAAAACTATCGTCGATTTCATA 297
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TTCGCTGGAAATCAACCAACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATT 300
Query 298 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCATTTATGGACACGGTGGACGGAGGAGTG 357
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCGTTTATGGACACGGTTGACGGAGGAGTG 360
Query 358 GATATTCTCCAGGGAGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 417
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATATTCTCCATGGTGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 420
Query 418 CGGCATCTGGGAGAGAGATTCAGCATGGGAAGACAAGTAGAGAACTTCGAGAAGACATTA 477
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CGCCATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAGAAGACATTA 480
Query 478 ATGGAGATAAGTAGAAGCATGAGGAAAGAGTCAGTAAAGGAGTATATGGCAAAGTCATTG 537
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 481 ATGGAGATAAGTAGGAGCATGAGGAAAGAGTCAGTGAAGGAATATATGGCAAAGTCATTG 540
Query 538 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAACGCTATTC 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAAGGCTATTC 600
Query 598 CTCTCAAGCTCCATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTCACC 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCTCAAGCTCTATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTCACC 660
Query 658 ACTCATCTCCTTGTATTGTACGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGT 717
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTCATCTCCTTGAATTGTATGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGT 720
Query 718 CCATTGGGTTGCATACCGGACCAACTAGCCGCCCGAGAGGCTCCGCCAGGTGAATGTGTG 777
||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||
Sbjct 721 CCATTGGGTTGCATACCAGACCAACTAGCCGCCCAAGCGGCTCTGCCAGGTGAATGTGTC 780
Query 778 GAGGCGGTTAACGAGATGGCTGAACTCTTCAACAACGGCCTCGTGTCGCTGGTGGACCGT 837
||||| || ||||||||||||||||| ||||||||| | || || ||||||||||| |||
Sbjct 781 GAGGCTGTAAACGAGATGGCTGAACTTTTCAACAACCGTCTTGTATCGCTGGTGGATCGT 840
Query 838 CTTAATTCCAATAGTAAAACTGCTAGTGAAGCCATCTTTGTTTATGGCAATACCTATGGA 897
|| |||||| ||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 841 CTCAATTCCGATAACAAAACCGCTAGTGAAGCCATCTTTGTTTACGGTAATACCTATGGA 900
Query 898 GCCGCCGTGGATATCCTCACAAACCCTTTTAGTTACGGATTCGAAGTGACGGATAGAGGG 957
|||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 901 GCCGCCGTGGATATTCTCACCAACCCATTTAATTACGGATTCGAAGTGACGGATAGAGGG 960
Query 958 TGTTGTGGAGTAGGTAGAAACAGAGGAGAAATAACGTGTTTGCCACTAGCGGTACCATGT 1017
|||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 961 TGTTGTGGAGTAGGGAGAAATAGAGGAGAAATAACGTGTCTGCCATTAGCGGTACCATGC 1020
Query 1018 GCTTTCAGAGACCGACATGTGTTCTGGGATGCATTTCATCCAACACAAGCTTTTAATCTC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCTTTCAGAGACCGACATGTGTTCTGGGATGCATTTCATCCAACACAAGCTTTTAATCTC 1080
Query 1078 ATAATTGCTCTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCCATTAATCTTTCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATAATTGCTCTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCCATTAATCTTTCT 1140
Query 1138 CAACTGTCTCGTCTCTAAACACTCAACAAATCCTTCTCTTTTT 1180
||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1141 CAACTTTCTCGTCTCTAAACCCTCAACAAATCCTTCTCTTTTT 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5