BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487688
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein |... 3066 0.0
AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein |... 1794 0.0
> AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:2748193-2751771 FORWARD LENGTH=2022
Length=2022
Score = 3066 bits (1660), Expect = 0.0
Identities = 1793/1858 (97%), Gaps = 5/1858 (0%)
Strand=Plus/Plus
Query 1 TCTCACACGGTAAAGTTAC-ATAGT-TCAGCTTGAATCGGCACTGACGAAAGCATCTTTC 58
||||||||||||||||||| ||| | |||||||||||| |||||||||| ||||||| |
Sbjct 3 TCTCACACGGTAAAGTTACAATAATCTCAGCTTGAATC-ACACTGACGAAGGCATCTTCC 61
Query 59 TGCGAATATGACGCCGCCGGCAAGTGAAACAGCTGCGGTGGTTGACGGCGGTGATGGGCA 118
||||| |||| || |||||||| |||||||||| ||||| ||||| ||||| ||||||||
Sbjct 62 TGCGATTATGGCGTCGCCGGCAGGTGAAACAGCAGCGGTTGTTGAGGGCGGAGATGGGCA 121
Query 119 GCAGCAACGACAAGCTGGTGGGTTTGGGCAGGCAATTACCGGAATCATTAGAATCGCCGT 178
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 122 GCAGCAACGACAAGCTGGTGGGTTTGGGCAGACAATTACCGGAATCATAAGAATCGCCGT 181
Query 179 CTTCTGCTACTTTGCTTCTAAGTTCTTTTCTCCGAAACAAAAACCAT-CGGATCCTTCTA 237
|||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||| |
Sbjct 182 CTTCTGTTACTTTGCTTCTAAGTTCTTTTCTCCCAAACAAAAACC-TGCGGATCCTTCCA 240
Query 238 AGCCTTCTCATCTTATGTCCAATCTCTTTCAGAGGGGAGAGCCCATGGATATGTGGTTTT 297
||||| ||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 241 AGCCTACTCATCTCATGTCCAATCTATTTCAGAGGGGCGAGCCCATAGATATGTGGTTTT 300
Query 298 ATCTTTCGGAGCATGAGAAATTCAATGACTTTGGCAATGAAGGTGCGCTTATTTGGCACG 357
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 301 ATCTTTCGGAGCATGAGAAATTCAATGACTTCGGCAATGAAGGTGCGCTTATTTGGCATG 360
Query 358 AGACAAACATACCTTATGCTGTGTGGAAGCCAGAGAGCACTAGGACCTTGTCAATGACAT 417
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 361 AGACAAACATACCTTATGCTGTGTGGAAACCAGAGAGCACTAGGACCTTGTCAATGACGT 420
Query 418 ATTATCCATCCGAGGCACTGAAGAATAATGGAAGTCTGTATGCTCATGTCTTCTTTGCTC 477
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTATCCTTCCGAGGCACTGAAGAATAATGGAAGTCTGTATGCTCATGTCTTCTTTGCTC 480
Query 478 GATCTGGCTATCCTATAGACCCCACTGATCCTGAATACCAACCTCTTAACTGCTTTGGCA 537
|||||| ||||||||||| | | ||||||||||||||| ||||| |||||||||||||
Sbjct 481 TATCTGGTTATCCTATAGATCTTAGTGATCCTGAATACCAGCCTCTCAACTGCTTTGGCA 540
Query 538 AGACACACCGTGTTGCAACTTACTTGCCAAAGCGAAAAGCAGATAAGAAGAAGAGTCTGT 597
||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 GGACTCACCCTGTTGCAACTTACTTACCAAAGCGAAAAGCAGATAAGAAGAAGAGTCTGT 600
Query 598 TGGGAAATCCCAAAGACGATGATGAATCCAATGTTGAAGTTGAGGAGGTTGATGGTAAGG 657
||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 601 TGGGAAATCCCAAAGACTCTGATGAATCCCATGTGGAAGTTGAGGAGGTTGATGGTAAGG 660
Query 658 ACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTTTCCTACTGGAAACCAAATGTCA 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 ACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTATCCTACTGGAAACCAAATGTCA 720
Query 718 CAATTAACCTAGTCGATGACTTTACTCGCTATCCACAGCATGGTGTACCACCAAACATTG 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAATTAACCTAGTCGATGACTTTACTCGCTATCCACAGCATGGTGTACCACCAAACATTT 780
Query 778 ATCCTTACTTACTGGTGGAACCTAGTACAGTAAACTACTACCCTACAGTTTTCTTTAATG 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 781 ATCCTTACTTACTGGTGGAACCTAGTACAATAAACTACTACCCTACAGTTTTCTTCAATG 840
Query 838 AGTTTTGGCTGCTAAGGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGCTGCCAC 897
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTTTTGGTTGCTAAGGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGCTGCCAC 900
Query 898 TTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGCAGATTGATC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGCAGATTGATC 960
Query 958 AGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACTAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACTAA 1020
Query 1018 AGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCGTCACAATGTTTGTTTCGATGC 1077
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 AGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCGTCACTATGTTTGTTTCGATGC 1080
Query 1078 TTCATTCTGTATTTGACTTCCTTGCATTCAAAAATGATATCCAGTTTTGGAACAAGAACA 1137
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCATTCTGTATTCGACTTCCTTGCATTCAAAAATGATATCCAGTTTTGGAACAAGAACA 1140
Query 1138 AATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTGAACTTTATGTGTCAGTTTATCA 1197
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1141 AATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCA 1200
Query 1198 TCTTCCTCTACCTGCTTGACAACGACACTTCGTGGATGATACTGGCTAGCTCTGGAGTTG 1257
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 TCTTCCTCTACCTGCTTGACAACGACACTTCATGGATGATACTGGCTAGCTCTGGAGTTG 1260
Query 1258 GTGTCTGCATCGAGTTCTGGAAAATAGGGAAAGCCATGCGGATTGAGGTTGATCGAAGTG 1317
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1261 GTGTCTGCATCGAGTTCTGGAAAATTGGGAAAGCCATGCGCATTGAGGTTGATCGAAGTG 1320
Query 1318 GGATGATTCCAAGATTGAGGTTCCACGACCGTGAATCCTATGCAAGCAACAAGACCAAGG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGATGATTCCAAGATTGAGGTTCCACGACCGTGAATCCTATGCAAGCAACAAGACCAAGG 1380
Query 1378 AGTATGACGACATCGCCATTAAATTCTTATCCTATGTGCTCCTCCTCCTTGTTGTGGGTT 1437
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1381 AGTATGACGACATTGCCATCAAATTCTTATCCTATGTGCTCCTCCTTCTTGTTGTGGGTT 1440
Query 1438 TCTCCATATATTCACTTGCCTATGAACGCCACAAGAGCTGGTACTCATGGATCCTATCTT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TCTCCATATATTCACTTGCCTATGAACGCCACAAGAGCTGGTACTCATGGATCCTATCTT 1500
Query 1498 CACTAACGAGCTGCGTCTACATGTTTGGTTTCATAATGATGTGTCCTCAATTGTTCATCA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CACTAACGAGCTGCGTCTACATGTTTGGTTTCATAATGATGTGTCCTCAATTGTTCATCA 1560
Query 1558 ACTATAAGCTGAAGTCAGTAGCACATTTACCATGGAGGCAAATGACATATAAGTTCCTCA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ACTATAAGCTGAAGTCAGTAGCACATTTACCATGGAGGCAAATGACATATAAGTTCCTCA 1620
Query 1618 ACACAATCATCGACGATCTCTTTGCTTTTGTCATCAAAATGCCAATGCTGCATCGCCTTT 1677
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1621 ACACAATCATCGACGATCTCTTTGCTTTTGTCATCAAAATGCCAATGTTGCATCGCCTTT 1680
Query 1678 CTGTCTTCCGAGATGATGTGATATTCTTAATATACTTGTACCAGAGATGGGTTTATCCTG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CTGTCTTCCGAGATGATGTGATATTCTTAATATACTTGTACCAGAGATGGGTTTATCCTG 1740
Query 1738 TGGACAAAACACGTGTCAACGAGTTTGGTTTTGGAGGTGAGGATGAGTCTGTGGATACAA 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TGGACAAAACACGTGTCAACGAGTTTGGTTTTGGAGGTGAGGATGAGTCTGTGGATACAA 1800
Query 1798 AGAAGATCTCTGACCAAGAAGATGACAAGAAAACAAACTAATTAGCTTTGTGCTTTTG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 AGAAGATCTCTGACCAAGAAGATGACAAGAAAACAAACTAATTAGCTTTGTGCTTTTG 1858
> AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:7946310-7950253 FORWARD LENGTH=2247
Length=2247
Score = 1794 bits (971), Expect = 0.0
Identities = 1465/1704 (86%), Gaps = 31/1704 (2%)
Strand=Plus/Plus
Query 153 ATTACCGGAATCATTAGAATCGCCGTCTTCTGCTACTTTGCTTCTAAGTTCTTTTCTCCG 212
||| |||| ||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct 347 ATTTCCGGCATCGTTAGAATCGCCGTCTTTTGGTATTTTGCTTCTAAGTTCTTTTCTCCT 406
Query 213 AAACAAAAACC-ATCGGATCCTTCTAAGCCTTCTCATCTTATGTCCAATCTCTTTCAGAG 271
|| || ||||| || |||||| || || ||||| || ||| | |||||||| || |
Sbjct 407 AAGCAGAAACCTAT-GGATCCCACTGCTCCGTCTCAGCTCATGACTAATCTCTTCCACAA 465
Query 272 GGGAGAGCCCA-TGGATATGTGGTTTTATCTTTCGGAGCATGAGAAATTCAATGACTTTG 330
||| || || ||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 466 GGGCGA-ATCATTGGATATGTGGTTTTATCTATCAGAGCAGGAGAAGTTCAATGACTTTG 524
Query 331 GCAATGAAGGTGCGCTTAT-TTGGCACGAGACAAACATACCTTATGCTGTGTGGA-AGCC 388
||||||| |||||| ||| |||||| ||||| || |||||||||||||| |||| | ||
Sbjct 525 GCAATGATCGTGCGC-TATATTGGCATGAGACGAATATACCTTATGCTGTATGGACA-CC 582
Query 389 AGAGAGCACTAGGACCTTGTCAATGACATATTATCCATCCGAGGCACTGA-AGAATAATG 447
|||||| | ||||||| |||| | || ||||||||||| ||| |||| | |||||||||
Sbjct 583 AGAGAGTATTAGGACCAAGTCACTTACGTATTATCCATCTGAGACACT-ACAGAATAATG 641
Query 448 GAAGTCTGTATGCTCATGTCTTCTTTGCTCGATCTGGCTATCCTATAGACCCCACTGATC 507
||||||||||||||||| |||| |||||||||||||| | ||| || |||||||||||||
Sbjct 642 GAAGTCTGTATGCTCATATCTTTTTTGCTCGATCTGGATTTCCCATTGACCCCACTGATC 701
Query 508 CTGAATACCAACCTCTTAACT-GCTTTGGCAAGACACACCG-TGTTGCAACTTACTTGCC 565
||||||| ||||||||||| | | ||| | | ||| || | ||| || |||||||| ||
Sbjct 702 CTGAATATCAACCTCTTAA-TAGTTTTAGTAGGACGCA-TGCTGTGGCGACTTACTTTCC 759
Query 566 AAAGC-GAAAAGCAGATAAGAAGAAGAGTCTGTTGGGAAATCCCAAAGACGATGATGAAT 624
||||| ||||| | |||||||||||||||| ||||| | |||||||||| ||||||||
Sbjct 760 AAAGCAGAAAA-AAAATAAGAAGAAGAGTCTCTTGGGCAGTCCCAAAGACTCTGATGAAT 818
Query 625 CC-AATGTTGAAGTTGAGGAGGTT-GATGGTAAGGACTCGGATCTCAAGGATGAGGGCCC 682
|| || |||||||||| | ||| || | |||| | || |||| |||||| |||| |||
Sbjct 819 CCGAA-CCTGAAGTTGAGAAAGTTGGA-GATAAGAAATCAGATCCCAAGGAAGAGGTCCC 876
Query 683 TGTGGAATGGGT-TTCCTACTGGAAACCAAATGTCACAATTAACCTAGTCGATGACTTTA 741
|||||||||| | | ||| ||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 877 TGTGGAATGGATATCCCT-CTGGAAACCTAATGTCACGATTAACCTGGTTGATGATTTTA 935
Query 742 CTCGCTATCCACAGCATGGTGTACCACCAAACATTGATCCTTACTTACTGGTGGAACCTA 801
||| |||| ||||| ||||||||||||||||||||| |||| |||||||||| ||||| |
Sbjct 936 CTCACTATTCACAGAATGGTGTACCACCAAACATTGCTCCTCACTTACTGGTAGAACCGA 995
Query 802 GTACAGTAAACTACTACCCTACAGTTTTCTTTAATGAGTTTTGGCTGCTAAGGGACAAGT 861
|||| ||| ||||| |||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 996 CCACAGGAAATTACTATCCTACAATTTACTTCAATGAGTTTTGGCTGCTAAGGGACAAGT 1055
Query 862 TGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAA 921
| ||| | |||||||||| |||||||| || ||||| ||||||||| |||| |||||||
Sbjct 1056 TCATTCCAGTCAATGAGACAGTCTCAGAACTACCACTAAATCTGGAAATAAGTCCCATAA 1115
Query 922 GCATGACAAAGTGGCAGCTGTTTCAGC-AGATTGATCAGTCTTTCCAGATTCACCGTAGC 980
|||||| |||||||| |||||||||| || ||||||| ||||||||||| || ||||||
Sbjct 1116 GCATGATGAAGTGGCAACTGTTTCAGCAAG-TTGATCAATCTTTCCAGATGCAGCGTAGC 1174
Query 981 TATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAAT 1040
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1175 TATGGAAGCATGCTTGACGGTGAATCTGACGAACTAAAGAAGGTGTTTTTGGAAGGAAAT 1234
Query 1041 CCCTATCTGTTGGGCG-TCACAATGTTTGTTTCGATGCTTCATTCTGTATTTGACTTCCT 1099
|||||||| ||||| | |||| ||||||||||||||||||||||| || || ||||||||
Sbjct 1235 CCCTATCTTTTGGG-GATCACGATGTTTGTTTCGATGCTTCATTCAGTGTTCGACTTCCT 1293
Query 1100 TGCATTCAAAAATGATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGC 1159
|||||||||||||||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 1294 GGCATTCAAAAATGATATCCAATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGC 1353
Query 1160 GAAGTCTGTCGTACTGAACTTTATGTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAA 1219
|||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1354 AAAGTCTGTTGTACTGAACTTTATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAA 1413
Query 1220 CGACACTTCGTGGATGATACTGGCTAGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAA 1279
||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 1414 CGACACTTCATGGATGATACTGGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAA 1473
Query 1280 AATAGGGAAAGCCATGCGGATTGAGGTTGATCGAAGTGGGATGATTCCAAGATTGAGGTT 1339
|||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1474 AATAGGGAAAGCCATGCGCATAGAGGTTGATCGAAGTGGAATGATTCCAAGGTTGAGGTT 1533
Query 1340 CCACGACCGTGAATCCTATGCAAGCAACAAGACCAAGGAGTATGACGACATCGCCATTAA 1399
||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 1534 CCATGATCGTGAATCGTATGCAAGCAATAAAACCAAGGAGTATGATGACATTGCCATCAA 1593
Query 1400 ATTCTTATCCTATGTGCTCCTCCTCCTTGTTGTGGGTTTCTCCATATATTCACTTGCCTA 1459
|||||||||||||||||||||||||||||| | || || ||||||||||| || || ||
Sbjct 1594 ATTCTTATCCTATGTGCTCCTCCTCCTTGTCATTGGCTTGTCCATATATTCTCTCGCTTA 1653
Query 1460 TGAACGCCACAAGAGCTGGTACTCATGGATCCTATCTTCACTAACGAGCTGCGTCTACAT 1519
||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 1654 TGAACGCCACAAGAGCTGGTATTCTTGGATACTATCTTCACTAACAAGCTGTGTCTACAT 1713
Query 1520 GTTTGGTTTCATAATGATGTGTCCTCAATTGTTCATCAACTATAAGCTGAAGTCAGTAGC 1579
||| |||||||| |||||||||||||| | ||||||||||| ||||| || ||||| ||
Sbjct 1714 GTTCGGTTTCATCATGATGTGTCCTCAGCTATTCATCAACTACAAGCTTAAATCAGTGGC 1773
Query 1580 ACATTTACCATGGAGGCAAATGACATATAAGTTCCTCAACACAATCATCGACGATCTCTT 1639
||||||||||||||| || ||||| || |||||||||||||| || ||||||||||||||
Sbjct 1774 ACATTTACCATGGAGACAGATGACTTACAAGTTCCTCAACACCATTATCGACGATCTCTT 1833
Query 1640 TGCTTTTGTCATCAAAATGCCAATGCTGCATCGCCTTTCTGTCTTCCGAGATGATGTGAT 1699
||| ||||||||||||||||| || | ||||| |||||||| ||| |||||||||||||
Sbjct 1834 TGCCTTTGTCATCAAAATGCCGATTTTACATCGACTTTCTGTATTCAGAGATGATGTGAT 1893
Query 1700 ATTCTTAATATACTTGTACCAGAGATGGGTTTATCCTGTGGACAAAACACGTGTCAACGA 1759
|||||| |||||||| ||||| || |||||||| || ||||| || |||||||| |||||
Sbjct 1894 ATTCTTGATATACTTATACCAAAGGTGGGTTTACCCAGTGGATAAGACACGTGTGAACGA 1953
Query 1760 GTTTGGTTTTGGAGGTGAGGATGAGTCTGTGGATACA-AAGAAGATCTCTGACCAAGAAG 1818
||| |||||||||||||||||||| ||| || | | ||| |||| |||| ||||||
Sbjct 1954 GTTCGGTTTTGGAGGTGAGGATGAAACTGCAGAGA-AGAAGTTGATCACTGAGAAAGAAG 2012
Query 1819 ATGA---CAAGAAAACAAACTAAT 1839
| || |||||||||||||||||
Sbjct 2013 AAGAAGACAAGAAAACAAACTAAT 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91816796805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5