BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487690
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2405 0.0
> AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:2753099-2755116 FORWARD LENGTH=1921
Length=1921
Score = 2405 bits (1302), Expect = 0.0
Identities = 1501/1596 (94%), Gaps = 18/1596 (1%)
Strand=Plus/Plus
Query 1 ATGAATCAGATCAAGCAGCTCCACGCGCACTGTCTGAGAACAGGCGTAGACGAAACCAAA 60
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGGGATCAAGCAACTCCACGCGCACTGTCTGAGAACAGGCGTAGACGAAACCAAA 60
Query 61 GATCTCTTACAACGATTGCTTCTGATTCCAAACCTTGTTTATGCCCGAAAGCTCTTCGAT 120
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 GATCTCTTACAACGATTGCTTCTGATACCAAACCTTGTTTATGCCCGAAAACTCTTCGAT 120
Query 121 CTTCATCGAAACCCTTGTATC-TTCCTCTACAACAAGCTGATTCAATCTTACTCTGTTCA 179
| ||||| ||| |||||| | ||||||||||||||||| |||||| |||||| ||||||
Sbjct 121 CATCATCAAAATTCTTGTA-CTTTCCTCTACAACAAGCTCATTCAAGCTTACTATGTTCA 179
Query 180 TCATCAGCCCCATGAATCTATCGTCCTCTATAATCTCCTCTCCTTCGATGG-CATCCGTC 238
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 180 TCACCAGCCCCATGAATCTATCGTCCTCTATAATCTCCTCTCCTTCGATGGTC-TCCGTC 238
Query 239 CAAATCACCACACTTTCAATTTCATTTTCGCAGCTTCTGCTTCGTTTTCGTCAGCTCGGC 298
||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 239 CAAGTCACCACACTTTCAATTTCATTTTCGCAGCTTCTGCTTCGTTTTCTTCCGCTCGAC 298
Query 299 CTTTACGGTTGCTTCATTCTCAGTTTTTTAGATCTGGGTTTGAGTCCGATTCCTTCTGCT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 CTTTACGGTTGCTTCATTCTCAGTTTTTTAGATCTGGGTTTGAGTCCGATTCGTTCTGCT 358
Query 359 GCACTGCTCTAATCACTGCCTATGCGAAGCTAGGAGCTTTGTGTTGTGCGCGCAGAGTGT 418
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCACTACCCTAATCACTGCCTATGCGAAGCTAGGAGCTTTGTGTTGTGCGCGCAGAGTGT 418
Query 419 TCGACGAAATGTCTAACCGAGATGTACCCGTGTGGAATGCAATGATCACGGGTTACCAAA 478
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 TCGACGAAATGTCTAAGAGAGATGTACCCGTGTGGAATGCAATGATCACGGGCTACCAAC 478
Query 479 GACGAGGTGATATGAAGGCGGCGATGGAGTTGTTTGACTCAATGCCTAATAAGAACGTAA 538
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 479 GACGAGGTGATATGAAGGCGGCGATGGAGTTGTTTGATTCAATGCCTCGTAAGAACGTAA 538
Query 539 CCTCGTGGACCACCGTCATTTCTGGGTTTTCTCAGAACGGGAATTACTCTGAAGCTTTAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTCGTGGACCACCGTCATTTCTGGGTTTTCTCAGAACGGGAATTACTCTGAAGCTTTAA 598
Query 599 CGATGTTTTTGTGTATGGAGAAAGACAAATCCGTGAAACCAAACCATATTACTCTAGTTA 658
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 599 AGATGTTTTTGTGTATGGAGAAAGACAAGTCCGTGAAACCAAACCATATTACTGTAGTTA 658
Query 659 GTGTTCTCCCCGCTTGTGCGAATCTAGGGGAATTGGAGATTGGCCGAAGATTAGAAGGCT 718
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 GTGTACTCCCCGCTTGTGCGAATCTGGGGGAATTGGAGATTGGCCGAAGATTAGAAGGCT 718
Query 719 ATGCTAGAGAGAACGGGTTCTTTGATAACATTTACGTGCGTAATGCTACACTAGAGATGT 778
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 719 ATGCTAGAGAGAACGGGTTCTTTGATAACATTTACGTGTGTAATGCCACAATAGAGATGT 778
Query 779 ACTCAAAATGTGGAATGATTGATGTAGCGAAACGGTTATTCGATGAAATTGGGAACCAGC 838
|||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||
Sbjct 779 ACTCAAAATGTGGAATGATTGATGTAGCGAAACGCTTATTCGAGGAACTTGGAAACCAGA 838
Query 839 GAAATTTGAT-CTCATGGAACTCCATGATCGGTAGTCTAGCTACTCACGGGAAACACGAC 897
|||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 839 GAAATTTG-TGCTCATGGAACTCCATGATTGGTAGTCTAGCTACTCACGGGAAACATGAC 897
Query 898 GAAGCTCTTGA-GCTTTATGCCCAAATGTTGCAAGAAGGAGA-AAGACCCGATGCAGTGA 955
||||||||| | ||||| |||||||||||||| |||||| || || ||||||||||||||
Sbjct 898 GAAGCTCTT-ACGCTTTTTGCCCAAATGTTGCGAGAAGGTGAGAA-ACCCGATGCAGTGA 955
Query 956 CATTTGTTGGATTGTTGCTAGCTTGTGTTCATGGTGGGATGGTGTTGAAGGGCAAAGAAT 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 956 CATTTGTTGGATTGTTGCTAGCTTGTGTTCATGGTGGGATGGTGGTGAAGGGCCAAGAAT 1015
Query 1016 TGTTCAAGTCCATGGAGGAAGTTCACAAGATTTCGCCAAAGCTAGAGCACTATGGATGCA 1075
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1016 TGTTCAAGTCCATGGAGGAAGTTCACAAGATTTCCCCAAAGCTAGAGCATTATGGATGCA 1075
Query 1076 TGATCGATCTCTTGGGGCGTGTTGGGAAGCTGCAAGAAGCCTGTGATCTCATCAAAACAA 1135
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1076 TGATCGATCTCTTGGGGCGTGTTGGAAAGCTGCAAGAAGCCTATGATCTCATCAAAACAA 1135
Query 1136 TGCCAATGAAACCAGATGCTGTCGTATGGGGAACCCTTTTGGGTGCTTGTAGTTTTCATG 1195
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 1136 TGCCAATGAAACCAGATGCTGTCGTATGGGGAACCCTTCTGGGTGCTTGTAGTTTCCACG 1195
Query 1196 GCAATGTTGAGATAGCAGAGATAGCAAGTGAGGCACTGATGAAGCTTGAACCCACAAATC 1255
| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1196 GAAATGTTGAGATAGCAGAGATAGCAAGTGAGGCACTGTTCAAGCTTGAACCTACAAATC 1255
Query 1256 CAGGTAACTGTGTGATCATGTCAAACATCTACGCAGCCAATGAGAAGTGGGATGGAGTTT 1315
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1256 CAGGTAACTGTGTGATCATGTCAAATATCTACGCCGCCAATGAGAAGTGGGATGGAGTTT 1315
Query 1316 TGAGGATGCGGAAGTTGATGAAGAAGGAAACGATGACAAAGGCTGCTGGATATAGCTATT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGAGGATGCGGAAGTTGATGAAGAAGGAAACGATGACAAAGGCTGCTGGATATAGCTATT 1375
Query 1376 TTGTGGAAGCAGGAGTTGAAGTTCATAAATTTACTGTGGAAGATAAATCACACCCAAGAT 1435
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTGTGGAAGTTGGAGTTGATGTTCATAAATTTACTGTGGAAGATAAATCACACCCAAGAT 1435
Query 1436 CTTATGAGATCTATCAGGTTCTTGACAAAATTTCCAGTAGAATGAAACCG-AAGAAGAGT 1494
||||||||||||||||||||||||| | |||| ||| |||||||||| | || ||||||
Sbjct 1436 CTTATGAGATCTATCAGGTTCTTGAGGAGATTTTCAGGAGAATGAAACTGGAA-AAGAGT 1494
Query 1495 CGGTTTGATTCTATGCTTCAGCTTGACCAAGTATGCATATGAAAGGAGATGTTTTGTTTG 1554
|| ||||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||||
Sbjct 1495 CGCTTTGATTCTTTGCTTCAGCCTGAACAACTATGCATATGAAAGTAGATGTTTTGTT-- 1552
Query 1555 TTCACTT-GTCCAGTAACAATGACTGAATCTATTGA 1589
||||| | ||| ||||||||||||||||| ||||
Sbjct 1553 --CACTTTG-CCAATAACAATGACTGAATCTTTTGA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5