BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487691
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08520.1 | Symbols: | Duplicated homeodomain-like superfami... 2100 0.0
> AT5G08520.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:2755175-2758362 REVERSE LENGTH=1813
Length=1813
Score = 2100 bits (1137), Expect = 0.0
Identities = 1300/1375 (95%), Gaps = 25/1375 (2%)
Strand=Plus/Plus
Query 283 ttCTCTTTATATCCGTAGTTTAGTTGTATGGTTGGGCTTTGATTGGAATATCAA-GGCTA 341
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 394 TTCTCTTTATATCCCTAGTTTAGTTGTATGGTTGGGTTTTGATTGGAATATCAAGGGGTA 453
Query 342 GTTTTTAGCTAGGTTCAGTGATACTTGGAAGATCTGAGTTCTTCGTGTG-TT-T-CTCAG 398
||||||||||||||||| ||||||||||||||||||||||||| || | || | | ||
Sbjct 454 GTTTTTAGCTAGGTTCACTGATACTTGGAAGATCTGAGTTCTT--TGGGATTCTGTTAAG 511
Query 399 CTTTGTGGAGATCTAAAAGACACGAAATTTGCT-GAAATCTGGTTGATATCCCAGATTTT 457
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 512 -TTTGTGGAGATCTAAAAGACACGAAATTTG-TAGAAATCTGGTTGATATCCCAGA-CTT 568
Query 458 TTAGAGGGATTAGGGTAGATTCTGTTGAATTTG-TGCGGGTTTGATTGGAAACATGACGG 516
||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||
Sbjct 569 TTAGAGGGATTAGGGTAGATTCTATAGAATTTGAGGCGGGTTTGATTGGAATTATGACGG 628
Query 517 TGGAGGAAGTTAGTGATGGTTCTGTGTGGAGTAGGGAGGATGATATTGCCTTTGAGAGAG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TGGAGGAAGTTAGTGATGGTTCTGTGTGGAGTAGGGAGGATGATATTGCCTTTGAGAGAG 688
Query 577 CTCTAGCTAATAATACTGATGAATCAGAGGAACGCTGGGAGAAGATTGCTGCTGATGTTC 636
||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 689 CTCTAGCCAATAATACCGATGAATCAGAGGAACGGTGGGAGAAGATTGCTGCAGACGTTC 748
Query 637 CAGGGAAAAGTGTTGAACAGATTAAAGAACATTATGAGCTTTTAGTTGAAGATGTTAGTA 696
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 749 CAGGCAAAAGTGTTGAACAGATTAAAGAACATTACGAGCTTTTAGTTGAAGATGTTACTA 808
Query 697 GGATTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTCAAGGATCAAATGGTC 756
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 809 GGATTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTGAAGGATCGAATGGCC 868
Query 757 ATGCTGGTGATGAAGGAGGAAGTAGTAAGAAAGGAGGTAACAATCATGCGGGAGAGTCTA 816
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 869 ATGCTGGTGATGAAGGAGCAAGTAGTAAGAAAGGAGGTAACAGTCATGCGGGAGAGTCTA 928
Query 817 ACCAAGGAGGTAAATCAAAGTCCGATCAAGAACGACGAAAGGGTATTGCGTGGACAGAAG 876
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 929 ACCAAGCAGGTAAATCAAAGTCCGATCAAGAACGACGAAAGGGTATCGCGTGGACAGAAG 988
Query 877 ATGAGCACAGGTTATTTCTTCTTGGTTTGGATAAGTACGGGAAAGGTGATTGGCGTAGCA 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 ATGAGCACAGGTTATTTCTTCTTGGTTTGGATAAGTACGGGAAAGGTGATTGGCGTAGCA 1048
Query 937 TTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTCGCGAGCCACGCTCAAAAGT 996
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1049 TTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTTGCGAGCCATGCTCAAAAGT 1108
Query 997 ATTTCATTCGTCTAAACTCAATGAACAAAGACAGAAGGCGATCAAGCATTCACGACATCA 1056
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 ATTTCATTCGTCTAAATTCAATGAACAAAGACAGAAGGCGATCAAGCATTCACGACATCA 1168
Query 1057 CTAGTGTTGGCAACGCAGATGTCTCAACGCCACAAGGACCAATCACTGGTCAGaacaaca 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 CTAGTGTTGGCAACGCAGATGTCTCAACGCCACAAGGACCAATCACTGGTCAGAACAACA 1228
Query 1117 gcaa---caacaacaacaacaaca-C--CA---GTTCTCCTGCTGTTGCTGGAGGAGGAA 1167
|||| ||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 1229 GCAATAACAACAACAACAACAACAACAACAACAGTTCTCCTGCTGTTGCTGGAGGAGGAA 1288
Query 1168 ACAAATCAGCCAAGCAAGCCGTCTCTCAAGCACCACCTGGAGCTCCTATGTATGGAACAC 1227
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1289 ACAAATCAGCCAAGCAAGCCGTCTCTCAAGCACCACCTGGACCTCCTATGTATGGAACAC 1348
Query 1228 CCACCATAGGTCAACCAGTAGTTGGAACACCAGTGAACCTCCCAGCTCCACCTCACATGG 1287
|| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CCGCCATAGGTCAGCCAGCAGTTGGAACACCAGTGAACCTCCCAGCTCCACCTCACATGG 1408
Query 1288 CTTATGGAGTCCATGCTGCTCCAGTCCCTGGCTCGGTGGTTCCTGGTGCAGCAATGAACA 1347
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1409 CTTATGGAGTTCATGCGGCTCCAGTCCCTGGCTCAGTGGTTCCTGGTGCAGCAATGAACA 1468
Query 1348 TGGGTCAAATGCCGTACACCATGCCGCGCACACCAACGGCTCATAGGTAACTCGAAAGCA 1407
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1469 TTGGTCAAATGCCGTACACCATGCCGCGTACACCAACGGCTCATAGGTAACTCGAAAGCA 1528
Query 1408 CCTTTGCAGTGATAGTGCACTTGGTTTT-AGGTGTAAGAAAGA---TGTGTAAAGGATTT 1463
||||||| || ||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1529 CCTTTGCTGTCATAGTGCACTTTGTTTTTAGGTGTAAGAAAGAAGATGTGTAAAGGATTT 1588
Query 1464 AGTGAATATTCAAAGCTTGTTCCTTGAGTGAGttttttttATTACTTAGTTTGTGGGGAT 1523
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 AGTGAATATTCAA-GCTTGTTCCTTGAGTGAGTTTTTTTTATTACTTAGTTTGTGGGGAT 1647
Query 1524 TTTGTATGAGGTCCGAATAAGATATTAAGATGACATGATTAGTTTGCAGACTCCAGAAGC 1583
||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 1648 TTTGTATGAGGTCCGAATAAGATATGAAGATGACATGATTAGTTTCCAGACTCGAGAAGC 1707
Query 1584 aaaaaaaCTCTTCTTTGTATGTGAACACAATAAAGCCTCTGTTATGAGGCTTACA 1638
||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1708 AAAAATACTCCTGTTTGTATGTGAACACAATAAAGCCTCTGTTATGAGACTTACA 1762
Score = 202 bits (109), Expect = 1e-50
Identities = 236/289 (82%), Gaps = 42/289 (15%)
Strand=Plus/Plus
Query 31 ctctctctctcagtcttctgggtttttccaatttccctttctctctctctctctcCTTCA 90
||||||||||||||||||||||||||||| | || || ||| |||||||||||||||||
Sbjct 49 CTCTCTCTCTCAGTCTTCTGGGTTTTTCCTA-TT-CC--TCTTTCTCTCTCTCTCCTTCA 104
Query 91 AGTTGCTGCAATCCC-T----A---GA-AAACCCCCAA-TTT-GATTTTCTTATAAAGTT 139
||||||||||||||| | | | |||||||||| ||| | ||||| ||||||||
Sbjct 105 AGTTGCTGCAATCCCTTGAAAACCCAATAAACCCCCAATTTTCCA-TTTCTCATAAAGTT 163
Query 140 CACA---TT--TT-TTCTTCTTCTGCCAATCCTCTTTTTCCCTCGTTTCAATCTCCGTTT 193
|||| || || |||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 164 CACATTTTTCCTTCTTCTTCTTCTGCCAATTCTCTGATTCCCTCGTTTCAATCTCCGTTT 223
Query 194 TGCTTTTGGCTATCAGAT--A-----------------TTCTATCTCATAACGATAAGTT 234
||| |||| ||||||||| | ||||||||||||||||||||||
Sbjct 224 TGC-TTTGCCTATCAGATAAATTTCTTCTTGCTTTCCTTTCTATCTCATAACGATAAGTT 282
Query 235 TAATTCATCTTTGCGTCTTAGTTCATCAGTAGAGAGAGTAGGGtttttt 283
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GAATTAATCTTTGCGTCTTAGTTCATCAGTAGAGAGAGTAGGGTTTTTT 331
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 TTCCCCTTCCTTTAACAATGGCGTTTTGACc 31
|||||||||||||||||||||||||||||||
Sbjct 1 TTCCCCTTCCTTTAACAATGGCGTTTTGACC 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5