BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487695
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2134 0.0
AT5G08550.1 | Symbols: ILP1 | GC-rich sequence DNA-binding fact... 111 1e-23
> AT5G08540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast,
chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink). | chr5:2763823-2765734
FORWARD LENGTH=1435
Length=1435
Score = 2134 bits (1155), Expect = 0.0
Identities = 1350/1441 (94%), Gaps = 26/1441 (2%)
Strand=Plus/Plus
Query 1 CTTCACCTTCCGTCGTAGTTCCCCGACTAGCTAAGTACTGTAGAGCTCCGCCGCATCCGA 60
||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||
Sbjct 1 CTTCACCTTCCGTCGTAGTTCCCCGACAAGCTAACTACTGTTGAGCCCCGCCGCATCCGA 60
Query 61 AGCCGTCTTTTCAAATCGTCGAGCTTCAACAATGACGTCTCTTCTCCTACCTTCATCTCA 120
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AGCCGACTTTTCAAATCGTCGAGCTTCAACAATGACGTCTCTTCTCCTTCCTTCATCTCA 120
Query 121 ATTTCTCCAGACTCGTAGCCAAAACAATGGCCAACCATTGCTTCTCCCTCGAACACCACT 180
||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 121 ATTTCTCCAGACTCGAACCCAAAACAATGGCCAACCATTCCTTCTCCCTCTAACACCACT 180
Query 181 TTTCGTC-TCACTTCCTTCTCTCCGTCAGCTGAGACCGAAACACCTCTCTATTTCCGCCG 239
|||| | |||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 GTTCG-CACCACTACCTTCTCTCCGTCAGTTGAGACCGAAACACATCTCTATTTCCGCCG 239
Query 240 CAGCTCCGAA-AAAACAATCGGAGACTGTCACGGCGCCGACGCCGACGGCGAAGAAGAAT 298
|||| ||||| |||| ||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 240 CAGCGCCGAAGAAAA-AATCGGAGACTGTCACGGCGCCGACACCGGCAGCGAAGAAGAAT 298
Query 299 TCGAGCGTGGAGGAGGAAACAGAAGAGGAAGTAGAGGAGGATATGTTGTGGATTCAAGAG 358
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 299 TCGAGCGTGGAGGAGGAAACAGAAGAGGAAGTAGAGGAAGATATGCCGTGGATTCAAGAG 358
Query 359 AAGGCGTTAGACCTAGTCGAGTTCACTGGATCGGTGACTCAGGCGATTCCAGGTCCTCGA 418
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 359 AAGGCGTTAGACCTAGTCGAGTTCACTGGATCGGTGAGTCAGGCGATTCCTGGTCCTCGA 418
Query 419 GTTGGAAGTAGCAAATTGCCGTGGATGCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTGGAAGTAGCAAATTGCCGTGGATGCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACT 478
Query 479 TTCGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAACGCAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 TTCGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAG 538
Query 539 AAACTGGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTACGGAAAGAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 539 AAACTGGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAAGCT 598
Query 599 GGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGACAGAGTTTAACATGGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGACAGAGTTTAACATGGAG 658
Query 659 GAGATATTGAGGAAATATATTCGGTATGCGTTGAATGAGAAGCCGTTTAATCCTGACCTT 718
||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 659 GAGATATTGCGGAAATACATTCGTTATGCGTTGAATGAGAAACCGTTTAATCCCGACCTT 718
Query 719 GTTGCTGATCTCATTCATCTAAGAAAAGCTTCTGGTTTGAATGATTCTCAGATTCCTGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTGCTGATCTCATTCATCTAAGAAAAGCTTCTGGTTTGAATGATTCTCAGATTCCTGAG 778
Query 779 ATTTTAAATGAGATCTCTCGTCGTATTGTCAAAGAAAAAGGTCCGGTAGTGATGAAAATG 838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 ATTTTAAATGAGATCTCTCGTCGTATTGTCAAGGAAAAAGGTCCGGTAGTGATGAAAATG 838
Query 839 CAAGGGTTTACAGAAAAAGGATTCAAGAGAAAACTCGCCGTGCAGGCGCTTTTTGGAAAG 898
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 CAAGGCTTTACCGAAAAAGGATTCAAGAGAAAACTCGCCGTGCAAGCGCTTTTTGGAAAG 898
Query 899 ATTTACTATCTCTCTGAGCTTCCTGACTTCTGCTCAAAAGACAACTCCTTAATCGTCAAG 958
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTTACTATCTTTCTGAGCTTCCTGACTTCTGCTCAAAAGACAACTCCTTAATCGTCAAG 958
Query 959 GAAATATTCGGAGTTACAGACGAAGACGCAGAGAAGCTGCGGATACACGCCCTTGCTGAA 1018
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 959 GAAATATTCGGCGTTACAGATGAAGACGCAGAGAAGCTGCGGATACACGCTCTTGCTGAA 1018
Query 1019 GCTGGAGATATAGAGGCACTTGAGAAAATGGTGGAATTTGAGAAAACAGCCGAGACTTCT 1078
|||||||| |||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 1019 GCTGGAGACATAGAGGCACTTGAGAAAATGGTGGAATTTGAGAAAACTGCGGAGTCTTCT 1078
Query 1079 TCGGATAAAGAAGAAGATTCAAATGAAGAAGATGATTCTAACACCACTTCCTAAGATGTT 1138
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 TCGGATAAAGAAGAAGATTCAAATGAAGAAGATGACTCTAACACCACTTCCTAAGATGTT 1138
Query 1139 TGTTCAACGACCAACTTT------T---T-C---C-AAAGGGGGGTTTCTTCTTCTGTTC 1184
|||||||||||||||||| | | | | |||||||| |||||||||||||||
Sbjct 1139 TGTTCAACGACCAACTTTCAACAGTAGATTCTTTCCAAAGGGGGTTTTCTTCTTCTGTTC 1198
Query 1185 TTTGACTTATATCCCAAGTTGTGTTGTTTACAGCAGAATA-GTCTGATTCCAACAGAAAT 1243
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1199 TTTGACTTATACCCCAAGTTGTGTTGTTTACAGCAGAAGACGTCTGATTCCAACAGAAAT 1258
Query 1244 TGCCCTTTTGCAAAAAAGCATGACACAGCTTGTAAGAGAAATTTATTGCATTTAAAATGC 1303
|| | |||||||||||| |||||||||||| |||| | ||||| | ||||| || | |||
Sbjct 1259 TGTC-TTTTGCAAAAAACCATGACACAGCTCGTAATACAAATTAACTGCATCTATAGTGC 1317
Query 1304 AGCACAACAATACAAGTTGTGGCTTATATTCATAGAAATTATTTTGTCTTTGCTAAATCT 1363
|||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 1318 AGCACAGCAATACAAGTTGGGGCTTATATTCATAGAAATAATATTGTCTTTGCTAAATCT 1377
Query 1364 AAACTCATACAGATATAAAAGGaaaaaaaaaaaaaaGACTAC-AGATACTTTAGCTTCTA 1422
||||||||||||||||||| ||||||| |||| |||| | |||||||||||||| ||
Sbjct 1378 AAACTCATACAGATATAAAGGGAAAAATAAAA----GACT-CGAGATACTTTAGCTTATA 1432
Query 1423 T 1423
|
Sbjct 1433 T 1433
> AT5G08550.1 | Symbols: ILP1 | GC-rich sequence DNA-binding factor-like
protein | chr5:2765642-2770282 REVERSE LENGTH=3066
Length=3066
Score = 111 bits (60), Expect = 1e-23
Identities = 85/96 (89%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 1329 ATATTCATAGAAATTATTTTGTCTTTGCTAAATCTAAACTCATACAGATATAAAAGGaaa 1388
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 3066 ATATTCATAGAAATAATATTGTCTTTGCTAAATCTAAACTCATACAGATATAAAGGGAAA 3007
Query 1389 aaaaaaaaaaaGACTAC-AGATACTTTAGCTTCTAT 1423
|| |||| |||| | |||||||||||||| |||
Sbjct 3006 AATAAAA----GACT-CGAGATACTTTAGCTTATAT 2976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70130161365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5