BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487696
Length=3044
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08550.1 | Symbols: ILP1 | GC-rich sequence DNA-binding fact... 4817 0.0
AT5G09210.1 | Symbols: | GC-rich sequence DNA-binding factor-l... 1042 0.0
AT5G08540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 111 3e-23
> AT5G08550.1 | Symbols: ILP1 | GC-rich sequence DNA-binding factor-like
protein | chr5:2765642-2770282 REVERSE LENGTH=3066
Length=3066
Score = 4817 bits (2608), Expect = 0.0
Identities = 2922/3071 (95%), Gaps = 32/3071 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGTAACCGTCCTAGGAATTTCCGGCGGCGAGGGGACGACGGCGGCGATGAAATC 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTAACCGTCCTAAGAATTTCCGGCGGCGAGGGGACGACGGCGGCGATGAAATT 60
Query 61 GACGGTAAAGTTGCTACCCCCGCGGCAAAACCGACTTCGACTCCTTCGTCGTCGAAACCT 120
||||||||||||||||||||| || |||||||||||||||||| ||| || |||||||||
Sbjct 61 GACGGTAAAGTTGCTACCCCCTCGTCAAAACCGACTTCGACTCTTTCCTCCTCGAAACCT 120
Query 121 AAAACACCCTCAGCCTCGGCCCCGAAGAAGAAACTTCTAAGTTTCGCCGACGACGAGGAG 180
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AAAACACTCTCAGCCTCGGCCCCGAAGAAGAAACTCCTAAGTTTCGCCGACGACGAGGAG 180
Query 181 GAGGAAGAAGATGGAGCTCCCCGTGTGACGATAAAGCCTAAGAACGGCAGAGACCGTGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAAGAAGATGGAGCTCCCCGTGTGACGATAAAGCCTAAGAACGGCAGAGACCGTGTC 240
Query 241 AAATCCTCTTCCCGTCTCGGCGTTTCGGGATCTTCTCACAGACACTCTTCAACCAAGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATCCTCTTCCCGTCTCGGCGTTTCGGGATCTTCTCACAGACACTCTTCAACCAAGGAA 300
Query 301 CATCGTCCCGCTTCTTCTAACGTGCTTCCTCAGGCCGGTTCTTATTCGAAAGAGGCGCTG 360
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CGTCGTCCCGCTTCTTCTAACGTGCTTCCTCAGGCCGGCTCTTATTCGAAAGAGGCGCTG 360
Query 361 CTCGAGCTCCAGAAGAACACACGGACGCTTCCGTATTCTCGCCCTAGTTCAAATTCCGAG 420
|||||||||||||||||||||||||||||||| ||||||||| ||||| | ||| |||||
Sbjct 361 CTCGAGCTCCAGAAGAACACACGGACGCTTCCTTATTCTCGCTCTAGTGCCAATGCCGAG 420
Query 421 CCAAAAGTAGTGCTTAAGGGTTTAATCAAACCTCCGCATGAGCATGAGCAGCAGAGTCTC 480
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 421 CCGAAGGTAGTGCTTAAGGGTTTAATCAAACCTCCGCAGGATCATGAGCAGCAGAGTCTG 480
Query 481 AAGGATGTGGTCAAACAGGTTTCGGATTTGGACTTCGATGAGGAAGGGGAAAAAGAGCAG 540
|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AAGGATGTAGTTAAACAGGTTTCGGATTTGGACTTCGATGAGGAAGGGGAAGAAGAGCAG 540
Query 541 CCTGAAGATGCTTTTGCCGATCAGGCAGCGATTATTAGAGCCAAGAAAGAGAGGATGAGG 600
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATGAAGATGCGTTTGCTGATCAGGCAGCGATTATTAGAGCCAAGAAAGAGAGGATGAGG 600
Query 601 CAGTCACGTTCAGCACCGGCGCCTGATTACATATCACTGGATGGTGGTACCGCAAATCAT 660
|||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 601 CAGTCACGTTCAGCACCGGCGCCTGATTACATATCACTAGATGGTGGTATCGTAAATCAT 660
Query 661 TCTGCTGTTGAAGGAGTCAGCGATGAGGATGCAGATTTTCAGGGGATTTTCGTCGGTGCG 720
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||
Sbjct 661 TCTGCTGTTGAAGGAGTCAGCGACGAGGATGCGGATTTTCAGGGAATTTTCGTCGGTCCG 720
Query 721 AGACCACACAAAGGTGATAAGAAAGGTGTGTTTGATTTCGGGGATGAAAATCCTACTGCT 780
||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 AGACCTCAGAAAGATGATAAGAAAGGTGTGTTTGATTTCGGTGATGAAAATCCTACTGCT 780
Query 781 AAAGAAACCACGACAAGTAGTTTTTATGAGGATGAGGATGAAGAAGAGAAGTTGTGGGAA 840
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 781 AAAGAAACCACGACAAGTAGTATTTATGAGGATGAGGATGAAGAAGATAAGTTGTGGGAG 840
Query 841 GAGGAGCAATTTAAGAAGGGTATTGGTAAAAGAATGGATGAAGGGTCTCATAGGACTGTA 900
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 841 GAGGAGCAATTTAAGAAGGGTATTGGTAAAAGAATGGACGAAGGGTCGCATAGGACTGTA 900
Query 901 ACTAGTAATGGGATTGGCGTGCCTTTGCATTCTAACCAGCAGTCACTACCACACCAGCAA 960
||||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 901 ACTAGTAATGGGATTGGCGTGCCTTTGCATTCTAAACAGCAGACACTGCCACAACAGCAA 960
Query 961 CCGCAGATGTATACTTATCATGCCGGGACACCAATGCCGAATATTTCTGTTGCTCCTACC 1020
|||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 961 CCGCAGATGTATGCTTATCATGCCGGGACACCAATGCCGAATGTTTCTGTCGCTCCTACC 1020
Query 1021 ATTGGTCCAGCTACTAGTGTTGATACATTACCAATGTCACAACAAGCCGCA-CTTGCCAA 1079
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1021 ATTGGCCCAGCTACTAGTGTTGATACATTACCAATGTCACAACAAGCCG-AGCTTGCCAA 1079
Query 1080 GAAGGCATTGCAAGACAATGTTAAGAAGCTTAAGGAATCTCATGCAAAAACGTTATCCTC 1139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAGGCATTGAAAGACAATGTTAAGAAGCTTAAGGAATCTCATGCAAAAACGTTATCCTC 1139
Query 1140 CCTTACCAAGACAGATGAGAATTTGACTGCTTCGTTGATGAGTATCACAGCTCTTGAAAG 1199
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1140 CCTTACCAAGACAGATGAGAATCTGACTGCGTCGTTGATGAGTATCACAGCTCTTGAAAG 1199
Query 1200 TTCGCTATCTGCAGCTGGAGATAAGTATGTGTTCATGCAAAAACTCAGAGACTTCATTTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCGCTATCTGCAGCTGGAGATAAGTATGTGTTCATGCAAAAACTCAGAGACTTCATTTC 1259
Query 1260 TGTTATCTGCGACTTCATGCAGAACAAGGGTTCCTTAATTGAAGAAATTGAAGATCAGAT 1319
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1260 TGTTATCTGTGACTTCATGCAGAATAAGGGTTCATTAATTGAAGAAATTGAAGATCAAAT 1319
Query 1320 GAAGGAACTTAACGAAAAACATGCTTTATCTATTCTGGAAAGGAGAATTGCAGATAACAA 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 GAAGGAACTTAACGAAAAACATGCTTTATCTATTCTAGAAAGGAGAATTGCAGATAACAA 1379
Query 1380 TGATGAAATGTTAGAGTTGGGGGCCGCTGTGAAAGCAGCAATGACAGTTCTAAACAAACA 1439
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 TGATGAAATGATAGAGTTGGGGGCCGCAGTGAAAGCAGCAATGACAGTTCTAAACAAACA 1439
Query 1440 AGGAAGCAGTACTTCAGTGATTGCTGCTGCCACAAGTGCTGCGTTGGCTGCCTCTGCTTC 1499
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1440 TGGAAGCAGTAGTTCAGTGATTGCTGCTGCCACAGGTGCTGCGTTGGCTGCCTCTACTTC 1499
Query 1500 TATAAGACAGCAGATGAATCAACCAGTTAAGCTTGATGAATTTGGCAGAGACGAAAATCT 1559
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TATAAGGCAGCAGATGAATCAACCAGTTAAGCTTGATGAATTTGGCAGAGACGAAAATCT 1559
Query 1560 GCAGAAGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCAGAAGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATT 1619
Query 1620 TGAAAACAAGCGTGCATCAGCCATGGAGATTGAAGGATCTTCTCTGAAAATAGAAGGAGA 1679
|||||| |||||||||||||| |||||| |||| ||| ||||||||||||||||||||||
Sbjct 1620 TGAAAATAAGCGTGCATCAGCTATGGAGGTTGATGGACCTTCTCTGAAAATAGAAGGAGA 1679
Query 1680 ATCAAGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATCAAGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTT 1739
Query 1740 ACTTCAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAG 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ACTTCAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAA 1799
Query 1800 GGTGAAGGCGAGATTTGAGAGGTGGAAGCGAGACTATTCATCAACTTATCGGGATGCTTA 1859
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1800 GGTGAAGGCGAGATTTGAGAGGTGGAAGCGAGACTATTCATCAACTTATCGTGATGCTTA 1859
Query 1860 CATGTCTTTGACCGTTCCCTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATG 1919
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CATGTCTTTGACCGTTCCTTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATG 1919
Query 1920 GGATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGATTGCTATTTGA 1979
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1920 GGATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGGTTGCTTTTTGA 1979
Query 1980 TTACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAGATGATACTGATGCCAACCTTGT 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 TTACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAGATGATACTGATGCCAACCTTGT 2039
Query 2040 CCCTGAGCTAGTAGAAAAGGTTGCGATTCCCATTTTGCACCATCAGATAGTTCGTTGCTG 2099
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2040 CCCTGAGCTAGTAGAAAAGGTTGCAATTCCAATTTTGCACCATCAGATAGTTCGTTGCTG 2099
Query 2100 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAA 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAA 2159
Query 2160 TTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAACTATTTGCTGCTATTCGTGCTCGCCT 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 TTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAACTATTTGCTGCTATTCGTGCTCGCCT 2219
Query 2220 TGTTGAAGCCATTGCAGCTGTTAGCGTTCCGACATGGGATCCGCTGGTATTGAAGGCTGT 2279
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 2220 TGTTGAAGCCATTGCAGCTATTAGTGTTCCGACATGGGATCCTCTGGTATTGAAGGCTGT 2279
Query 2280 ACCTAATGCTCCACAAGTTGCAGCATATAGATTTGGGACATCAGTCCGTCTTATGAGAAA 2339
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2280 ACCTAATACTCCACAAGTTGCCGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAAA 2339
Query 2340 TATATGTATGTGGAAAGACATTCTGGCGCTCTC-AGTGTTGGAGAACTTGGCTCTTAGTG 2398
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 2340 TATATGTATGTGGAAAGACATCCTGGCGCT-TCCAGTGTTGGAGAACTTGGCTCTTAGTG 2398
Query 2399 ACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCAAATATCCATGATG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 ACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCAAATATCCATGATG 2458
Query 2459 CTGTGACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTATGGACAGGACCAAGCG 2518
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2459 CTGTGACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTGTGGACAGGACCAAGCG 2518
Query 2519 TCACAAGAACCCACAGTCGTCCACTGCAACCTCTTGTGGATTGTACTCTGACACTCAGAA 2578
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2519 TCACACGAACCCACAGTCGTCCGCTGCAACCTCTTGTGGATTGTACTCTGACACTTAGAA 2578
Query 2579 GAATTCTCGAGAAAAGGCTTGCCTCAGGACTGGACGATGCAGAAACCACTGGTCTCGCCC 2638
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 2579 GAATTCTCGAGAAAAGGCTTGGCTCAGGACTGGACGATGCGGAAACCACTGGTCTCGCCC 2638
Query 2639 GCAGGTTAAAGAGAATACTAGTAGAGCTCCATGAACATGACCATGCCAGGGAAATTGTCA 2698
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2639 GCAGATTAAAGAGAATACTAGTCGAGCTCCATGAACATGACCACGCCAGGGAAATTGTCA 2698
Query 2699 GAACATTCAATCTCAAGGAGGCCGTTT-AGTGAAAATTTTATTGATGGGAAACTGGAAAG 2757
||||||||||||| |||||||| |||| | |||| |||||||||||||||||||||||
Sbjct 2699 GAACATTCAATCTTAAGGAGGCAGTTTGACC-AAAAGTTTATTGATGGGAAACTGGAAAG 2757
Query 2758 TCAACTCAGAAATCTTTAGCCTCAGGTTATCAGT-TACACCTTTCGGACTGTACCAGCTA 2816
||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||| |
Sbjct 2758 TCAACACAGAAATCTTTAGCCTCAGGTTATCAGGCT-CACCTTTCGGGCTGTACCAGCAA 2816
Query 2817 AGCCTCATCGACTTCAACATCGAAGATTACAACATTTTCCCTAGGATTATTAGGCTAGCA 2876
|| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2817 AGGCTCATCGATTTCAACATCGAGGATTACAAGATTTTCCCTAGGATTATTAGGCTAGCA 2876
Query 2877 CCAAAAGCTTCCGGAATCCATTTTCAGACACAGAAGAGTTTTAGTACTTTGGCTTAATGT 2936
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2877 CCAAAACCTTCCGGAATCCATTTTCAGACACAGAAGAGTTTTAGTACTTTGGCTTAATGT 2936
Query 2937 AAGTGTAACCTCTA-T------AGAAG-C-T-A-AAGTA--TCT--G-TA--GTCtttt- 2977
||||||||||||| | |||| | | | || || | | | || || | |
Sbjct 2937 AAGTGTAACCTCTTGTGGTTGTAGAAAACCTTATAA-TAAATATAAGCTAAAGTATCTCG 2995
Query 2978 --t-tttt-tttttCCTTTTATATCTGTATGAGTTTAGATTTAGCAAAGACAAAATAATT 3033
| |||| ||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 2996 AGTCTTTTATTTTTCCCTTTATATCTGTATGAGTTTAGATTTAGCAAAGACAATATTATT 3055
Query 3034 TCTATGAATAT 3044
|||||||||||
Sbjct 3056 TCTATGAATAT 3066
> AT5G09210.1 | Symbols: | GC-rich sequence DNA-binding factor-like
protein | chr5:2862610-2865359 REVERSE LENGTH=1812
Length=1812
Score = 1042 bits (564), Expect = 0.0
Identities = 876/1022 (86%), Gaps = 39/1022 (4%)
Strand=Plus/Plus
Query 1642 ATGGAGATTGAAGGATCTTCTCTGAAAATAGAAGGAGAATCAAGCA-C--TGATGAGAGT 1698
||| || |||| |||| ||| |||| | |||||||||| ||||||| | ||||||||||
Sbjct 754 ATGAAGGTTGATGGATATTCCCTGATAGTAGAAGGAGACTCAAGCACCGATGATGAGAGT 813
Query 1699 GACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTTACTTCAGTGTGCTGATAAG 1758
||| |||||||||||||||| ||||| || ||||||||||||||||| |||| || ||
Sbjct 814 GACTGTGAGACTTCAGCTTATGAGGAGGCACGAGATAGCTTACTTCAGCGTGCCGACAAA 873
Query 1759 GTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAGGGTGAAGGCGAGATTTGAG 1818
|||||||||||||||||| || ||||||| ||||||||||||||||| ||| |||| |
Sbjct 874 ATCTTTAGTGATGCATCTGTGGTGTACTCCGAGCTTTCAAGGGTGAAGTCGATATTTAAA 933
Query 1819 AGGTGG-AAGCGAGACTATTCATCAACTTAT-CGGGATGCTTACATGTCTTTGACCGTTC 1876
||| || |||| || |||| | ||| | |||| |||||||| ||||||||||||||
Sbjct 934 AGG-GGTGCGCGACACCCTTCACCTGCTT-TCCGGGCTGCTTACACGTCTTTGACCGTTC 991
Query 1877 CCTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATGGGATCCTCTTCATCAAG 1936
| ||||| | |||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 992 CTTCCATGTATTCACCTTATCTAAGACTGGAGCTTTTGAGATGGGATCCTCTTCATCAGG 1051
Query 1937 ATGTGGATTTCTTTGACATGAAATGGCATGGATTGCTATTTGATTACGGGAAGCCAGAAG 1996
|||| ||||||| ||||||||| ||||||||| |||| ||| ||| | || | |
Sbjct 1052 ATGTCGATTTCTCTGACATGAATTGGCATGGACTGCTGTTTCATT-C---TAG---G-A- 1102
Query 1997 ATG-GGGATGATTTTGCACCAG-ATGATACTGATGCCAACCTTGTCCCTGAGCTAGTAGA 2054
|| | | || || | |||||| || |||| || ||||| |||| |||||||||| ||
Sbjct 1103 TTGTGTG-TGGTTCTACACCAGTTTG-TACTAATCCCAACTTTGTATCTGAGCTAGT-GA 1159
Query 2055 AA-AGGTTGCGATTCCCATTTTGCACCATCAGATAGTTCGTTGCTGGGATATACTTAGCA 2113
|| | |||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1160 AATATGTTGCGGTTCCCATTTTGCACCATCGGATAGTTCGTTGCTGGGATATACTTAGCA 1219
Query 2114 CCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAA-ATTATGTTTCTGCT 2172
|| ||||||| ||||||| |||||||||||||||||||||| ||| | ||||||| | ||
Sbjct 1220 CCAGGGAGACGAGAAATGTTGTTGCTGCTACAAGCTTGGTGGCAAGA-TATGTTTTTCCT 1278
Query 2173 TCGAGTGAGGCCTTAGCAGAACTATT-TGC-TGCTATTCGTGCTCGCCTTGTTGAAGCCA 2230
|||||||||||| |||| ||||| || | | |||||||| ||||||||||||||||||||
Sbjct 1279 TCGAGTGAGGCCCTAGCGGAACT-TTCT-CTTGCTATTCATGCTCGCCTTGTTGAAGCCA 1336
Query 2231 TTGCAGCTGTTAGCGTTCCGACATGGGATCCGCTGGTATTGAAGGCTGTACCTAATGCTC 2290
|| |||| |||| ||||| ||||||||||| | ||||| |||| ||||||||||||||
Sbjct 1337 TTATAGCTATTAGTGTTCCAACATGGGATCCTCAGGTATCAAAGGATGTACCTAATGCTC 1396
Query 2291 CACAAGTTGCAGCATATAGATTTGGGACATCAGTCCGTCTTATGAGAAATATATGTATGT 2350
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1397 CACAAGTTGCAGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAAATATTTGTATGT 1456
Query 2351 GGAAAGACATTC-TGGCGCTCTCAG-TGTTGGAGAACTTGGCTCTTAGTGACCTTTTGTT 2408
|||||||| | | ||| ||| || | | |||||||| |||||||| ||||||||||||||
Sbjct 1457 GGAAAGACGT-CATGGAGCT-TCCGGTCTTGGAGAAGTTGGCTCTGAGTGACCTTTTGTT 1514
Query 2409 TGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCA-AAT-A--T--CCATGATGCTGT 2462
|||||||||| |||| ||||||||||||||||||||| ||| | | ||||||||||||
Sbjct 1515 TGGAAAAGTTTTACCTCATGTCAGAAGCATTGCATCAGAATCAAATATCCATGATGCTGT 1574
Query 2463 GACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTATGGACAGGACCAAGCGTCAC 2522
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1575 GACAAAAACTGAAAGGATCGTTGCTTCTTTGTCTGGAGTATGGACTGGACCAAGTGTCAC 1634
Query 2523 AAGAACCCACAGTCGTCCACTGCAACCTCTTGTGGATTGTACTCTGACACTCAGAAGAAT 2582
|||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1635 AAGAACCCACAGTCATCTGCTGCAACCCCTTGTGGATTGTACTCTGACACTTGGAAGAAT 1694
Query 2583 TCTCGAGAAAA-GGCTTGCCTCAGGACTGGACGATGCAGAAACCACTGGTCTCGCCCGCA 2641
|||||||||| || ||||||| ||||||| |||| | ||||||||||||||||||||||
Sbjct 1695 ACTCGAGAAAAAGGTTTGCCTCGGGACTGGTCGATACGGAAACCACTGGTCTCGCCCGCA 1754
Query 2642 GG 2643
||
Sbjct 1755 GG 1756
> AT5G08540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast,
chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink). | chr5:2763823-2765734
FORWARD LENGTH=1435
Length=1435
Score = 111 bits (60), Expect = 3e-23
Identities = 85/96 (89%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 2950 ATAGAAGCTAAAGTATCT-GTAGTCttttttttttttttCCTTTTATATCTGTATGAGTT 3008
||| |||||||||||||| | |||| |||| ||||||| ||||||||||||||||||
Sbjct 1433 ATATAAGCTAAAGTATCTCG-AGTC----TTTTATTTTTCCCTTTATATCTGTATGAGTT 1379
Query 3009 TAGATTTAGCAAAGACAAAATAATTTCTATGAATAT 3044
|||||||||||||||||| || ||||||||||||||
Sbjct 1378 TAGATTTAGCAAAGACAATATTATTTCTATGAATAT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151353667031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5