BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487697
Length=2264
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08560.1 | Symbols: | transducin family protein / WD-40 rep... 3469 0.0
> AT5G08560.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:2770874-2774672 REVERSE LENGTH=2299
Length=2299
Score = 3469 bits (1878), Expect = 0.0
Identities = 2086/2184 (96%), Gaps = 23/2184 (1%)
Strand=Plus/Plus
Query 89 TCTATCATCTTCTCACCGCTTCCTAAATCTCTCTAGCGGTCTTCCTTCCCCCCTTTGTTT 148
|||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 131 TCTATCATCTCCTCACCGCTTCCTAAATCTCTATAGCGGTCTTCCTTCCCTCCTTTGTTT 190
Query 149 CCGGGCTGTTCCTTAATCCCTATCTCTTTCTCTTTCTTCTGCCATCGCCAAACCTTATCT 208
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CCGGGCTGTTCCTTAATCACTATCTCTTTCTCTTTCTTCTGCCATCGCCAAACCTTATCT 250
Query 209 GGGTTTTGCTTCTTATTTGATA-ATTTATATGGGCTGAACTAGGAATTTCATGGGAGTTG 267
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 251 GGGTTTTGCTTCTTATTTGA-AGATTTATATGGGCTGAACTAGGAATTTCATGGGAGTTG 309
Query 268 TGGAGGATACTGAACCTCCTTTGAAACGTGCTAAGCGGCTTACTGACGAACCGAACGGCT 327
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 310 TGGAGGATACTGAACCTCCTTTGAAACGTGCTAAGAGGCTTGCTGACGAACCGAACGGCT 369
Query 328 TCTCCGCGAACTCCTCTCTTAGAGGTAGTAGTGTG-A-A-CAACTCTTTGGGAGACCTGA 384
||||||||||||| ||| ||||||||||||||||| | | ||||||||||||||||||||
Sbjct 370 TCTCCGCGAACTCGTCTGTTAGAGGTAGTAGTGTGAACAGCAACTCTTTGGGAGACCTGA 429
Query 385 TGGCAAGGCCTCTGACCTCCCAAGGGGATGAGGAAACTATTGGCTCCAAAGGGGTCATTA 444
|||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 430 TGGCAAGGCCTCTGCCCTCCCAAGGGGATGACGAAACTATCGGCTCCAAAGGGGTCATTA 489
Query 445 AAAAATCTGAATTCATTAGGATTATCACTAGGGCTCTTTATTCGCTTGGATATGATAAAA 504
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 490 GAAAATCTGAATTCGTTAGGATTATCACTAGGGCTCTTTATTCTCTTGGATATGATAAAA 549
Query 505 CTGGGGCTATGTTGGAGGAAGAATCCGGAATCTCTCTGCATAATTCCACCATTAAGCTGT 564
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 550 CCGGGGCTATGTTGGAGGAAGAATCCGGTATCTCTCTGCACAATTCCACCATTAAGCTGT 609
Query 565 TTCTGCAGCAGGTTACGGACGGAAAATGGGATCAAAGTGTTAAAACACTGCACAGAATCG 624
||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 610 TTCTGCAGCAGGTTAAGGACGGCAAATGGGATCAAAGTGTTAAAACATTGCACAGAATCG 669
Query 625 GTCTGCCTGATGAAAAGGCTGTCAAATCTGCGTCTTTCTTGCTCCTAGAGCAAAAGTTCT 684
|| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 670 GTTTCCCTGATGAGAAGGCTGTCAAGGCTGCGTCTTTCTTGCTCCTAGAGCAAAAGTTCT 729
Query 685 TGGAGCTTCTCAAAGTTGAAAACATAGCTGATGCGCTAGGCACCTTAAGGAATGAGATGG 744
||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 730 TGGAGTTTCTCAAAGTTGAAAAGATAGCTGATGCGCTACGCACCTTAAGGAATGAGATGG 789
Query 745 CACCTCTTCGTATTAATACAAAGCGTGTTCATGAGCTCGCTTCCTCCCTTATATCACCTT 804
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CGCCTCTTCGTATTAATACAAAGCGTGTTCATGAGCTCGCTTCCTCCCTTATATCACCTT 849
Query 805 CAAGCTTTATATCACATACCACTTCGACTCCAGGTAAAGAAAGTGTGAATTCAAGGTCTA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CAAGCTTTATATCACATACCACTTCGACTCCAGGTAAAGAAAGTGTGAATTCAAGGTCTA 909
Query 865 AGGTTCTGGAGGAACTGCAAAACTTGCTTCCTGCTTCTGTTATAATCCCAGAAAAGAGGT 924
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 910 AGGTTTTGGAGGAACTGCAAACCTTGCTTCCTGCTTCTGTTATAATCCCAGAAAAGAGGT 969
Query 925 TGGAGTGTTTAGTTGAGAATTCACTTCATATTCAGCGGGATTCTTGTGTTTTCCATAATA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TGGAGTGTTTAGTTGAGAATTCACTTCATATTCAGCGGGATTCTTGTGTTTTCCATAATA 1029
Query 985 CTTTGGATAGTGATTTGTCTTTGTACTCTGATCATCAATGCGGGCAGCACCAAATTCCTT 1044
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1030 CTTTGGATAGTGATTTGTCTTTGTATTCTGATCATCAATGCGGGAAGCACCAAATTCCTT 1089
Query 1045 CTCAGACT-CTTCAGATCTTGGAGTCACATACCGATGAAGTTTGGTTCTTGCAATTCTCA 1103
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1090 CTCAGACTGC-TCAGATCTTGGAGTCACATACCGATGAAGTTTGGTTCTTGCAATTTTCA 1148
Query 1104 CACAATGGCAAATATTTGGCTTCATCTTCCAAGGATCAAACCGCAATTATATGGGAGATC 1163
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 CATAATGGCAAATATTTGGCTTCATCTTCCAAGGATCAAACCGCAATTATATGGGAGATC 1208
Query 1164 AGCGTAGATGGGCACACTTCATTGAAGCATACACTTGTGGGCCACCAGAAACCCGTGATT 1223
|||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1209 AGCGCAGATGGGCACATTTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGTGATT 1268
Query 1224 GCCATCTTATGGAGTCCTGATGATCGTCAAGTTCTTACATGTGGAGCAGAAGAGGTTATC 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GCCATCTTATGGAGTCCTGATGATCGTCAAGTTCTTACATGTGGAGCAGAAGAGGTTATC 1328
Query 1284 AGACGCTGGGATGTTGATTCAGGAGACTGTGTTCACATGTATGAAAAAGGCGGTATCAGT 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AGACGCTGGGATGTTGATTCAGGAGACTGTGTTCACATGTATGAAAAAGGCGGTATCAGT 1388
Query 1344 CCCATTTCTTGCGGATGGTATCCTGATGGGCAGGGAATAATCGCGGGGATGACAGACCGA 1403
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1389 CCCATTTCTTGCGGATGGTATCCTGATGGGCAGGGGATAATCGCCGGGATGACAGACCGA 1448
Query 1404 AGCATTTGCATGTGGGATTTAGATGGTAGAGAGTTGGAATGCTGGAAAGGTCAGAGGACT 1463
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1449 AGCATCTGCATGTGGGATTTAGATGGTAGAGAGAAGGAATGCTGGAAAGGTCAGAGGACT 1508
Query 1464 CAAAAGGTATCAGATATAGCAATGACAGATGATGGAAAGTGGCTCGTAAGTGTATGCAAG 1523
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1509 CAAAAGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCAAA 1568
Query 1524 GATTCCGTGATATCTCTATTTGATAGAGAAGCTACAGTTGAGAGATTAATTGAAGAGGAA 1583
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1569 GATTCCGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGATTAATAGAAGAGGAA 1628
Query 1584 GAAATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATTCTGGTAAACCTCCTC 1643
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1629 GACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTC 1688
Query 1644 AACCAGGAAATCCGTCTCTGGAATATTGAAGGTGACCCCAAGATTGTGTCAAGATACAAA 1703
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1689 AACCAGGAAATCCGTCTCTGGAATATTGAAGGTGACCCCAAGATTGTGTCGAGATACAAA 1748
Query 1704 GGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTATAAACAAGCTTTC 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 GGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTATAAACAAGCTTTC 1808
Query 1764 GTCGCTAGCGGAAGCGAGGATTCCCAGGTATACATATGGCACAGATCTACAGGGAAGTTA 1823
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1809 ATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGGCACAGATCTACAGGGAAGTTA 1868
Query 1824 ATCGTTGAGCTACCAGGCCATGCAGGAGCAGTCAACTGCGTGAGCTGGAGCCCGACGAAC 1883
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1869 ATAGTTGAGCTACCAGGCCATGCAGGAGCAGTTAACTGCGTGAGCTGGAGCCCGACGAAT 1928
Query 1884 CTACACATGTTGGCTTCAGCAAGCGATGACGGAACCATAAGGATATGGGGACTTGACCGG 1943
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1929 CTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGATATGGGGACTTGACCGG 1988
Query 1944 ATTAACCAACAGAACCAGAAGAAGCA--T-GTGCAAGGAAGTAGCAGTAACGGTGTGATT 2000
||||||||||| |||||||||||| | | |||||||||||||||||||| |||||||||
Sbjct 1989 ATTAACCAACAAAACCAGAAGAAGAAGCTAGTGCAAGGAAGTAGCAGTAATGGTGTGATT 2048
Query 2001 CACCGATGCAATGGGAATTGATTATGATAGaaaaaaaGAAAATGAATGACCTTCCTTAAA 2060
||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||
Sbjct 2049 CACCGATGCAATGGGAATTGATTATGATA-AAAAAAA-AAG--GAATGACCTTC-TTAAA 2103
Query 2061 ACTATTTAACAGTTATGTTGTTTCTTCTTTCTTCATCATCCTCTTTATGTTTGCTTCCGT 2120
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 2104 ACTATTTAACAGTTATGTTGTTTCTTCTTTCTTCATCAGCCTCTTTTTGTTTGCTTCCTT 2163
Query 2121 TGGTATGGAAAGCAAAAGAAAGAAGGCAAAATCTGTTTCTTTTCTTTTTTaaaaaaaaTT 2180
|||||||||||||||| ||||||||| |||| |||||| |||| |||| ||| ||
Sbjct 2164 TGGTATGGAAAGCAAACGAAAGAAGGTAAAAGCTGTTT-TTTT-TTTTC-AAA-----TT 2215
Query 2181 CTGAACCCATCAGTGGAAGGAACaaaaaggaaaaaaaaaaTGCAATTTGCAATATAATTC 2240
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2216 CTGAACCCATAAGTGGAAGGAACAAAAAGGAAAAAGAAAATGCAATTTGCAACATAATTC 2275
Query 2241 TTCTAATGATGTTACATTGTACAT 2264
||||| ||||||||||||||||||
Sbjct 2276 TTCTATTGATGTTACATTGTACAT 2299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112348819710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5