BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487703
Length=2540
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosp... 3027 0.0
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicas... 2006 0.0
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosp... 1406 0.0
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 65.8 2e-09
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 58.4 3e-07
> AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790295-2794215
FORWARD LENGTH=2755
Length=2755
Score = 3027 bits (1639), Expect = 0.0
Identities = 1790/1864 (96%), Gaps = 5/1864 (0%)
Strand=Plus/Plus
Query 632 GTCCTCTTTTCGTGGAAGGAATGATAGAAATGTAGATTCAGGGTCGTCTTTTCGTGGAAG 691
||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 799 GTCGTCTTTTCGTGGAAGGAGTGATAGAAATGTAGACTCAGGGTCGTCTTTTCGTGGTAG 858
Query 692 GAATGAGAGGAATGTAGATTCAGGGTCATCTTTTCGTGGAAGGAATGAGAGGAATGTAGA 751
|||||| || |||||||| |||||||| ||||||||||| |||||||| || ||||||||
Sbjct 859 GAATGATAGAAATGTAGACTCAGGGTCGTCTTTTCGTGGTAGGAATGATAGAAATGTAGA 918
Query 752 TTCAGGGTTTAGGAGAGAGCAAGGTTTGGAAAACAACAGGGGCTTGGGGAAACAGACAAG 811
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 919 ATCAGGGTTTAGGAGAGAGCCAGGTTCCGAAAACAACAGGGGCTTGGGGAAACAGACAAG 978
Query 812 AGGTTTAAAACAGGAAGAGGAAGATAGTAGTGAAGAGGACGAGGAGAGAGTAT-TATCGG 870
||| |||| | ||||||||||||||||||||| || |||||| | || || | || ||
Sbjct 979 AGGCTTAAGCCTGGAAGAGGAAGATAGTAGTGACGATGACGAGAACAGGGT-TGGATTGG 1037
Query 871 GAACCATTGATGATTTGCTTAGTGAAGATAGTAGTGATGAGGATGATGAAGATGATGAGC 930
||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1038 GAAACATCGATGATTTGCCTAGTGAAGATAGTAGTGATGAGGATGATGAAAATGATGAGC 1097
Query 931 CTCTTATTAAGAAAGCGGCTTCTGCTAAGGCTGTTCAGACTGATAAGCCAAGTGGTGAAC 990
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1098 CTCTTATTAAGAAAGCGGCTTCTGCTAAGGCTGTTCAGACTGATAAGCCAACTGGTGAAC 1157
Query 991 ATGTCAAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCCACTCTCTC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 ATGTCAAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCCACTCTCTC 1217
Query 1051 CCTTGTCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGG 1110
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CCTTATCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGG 1277
Query 1111 CTACTCTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTG 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CTACTCTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTG 1337
Query 1171 GGAAAACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCCCCCTGCAA 1230
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1338 GTAAAACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCCTCCTGCAA 1397
Query 1231 GCCGGGATAATAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTG 1290
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GCCGGGATAGTAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTG 1457
Query 1291 CCAGTCAAGCTGCGGCAGAAGCAAACACCTTGCTGAAGTATCACCCATCTATTGGTGTTC 1350
||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1458 CCAGTCAAGCTGCGGCAGAGGCAAATACCTTACTGAAGTATCACCCCTCTATTGGTGTTC 1517
Query 1351 AAGTTGTGATTGGAGGTACAAAACTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTT 1410
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1518 AAGTTGTGATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTT 1577
Query 1411 GCCAGATCCTTGTGGCTACACCCGGAAGGCTCAAAGACCATATTGAGAACACTTCTGGAT 1470
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1578 GCCAGATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGAT 1637
Query 1471 TTGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGG 1530
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1638 TCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAGCTGATCATCTCTTGG 1697
Query 1531 ACATGGGTTTCCGAAGGGATATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAA 1590
||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 1698 ACATGGGTTTCCGAAGGGACATTGAGAGGATAATTGCCGCTGTTCCTAAGCAGAGACAAA 1757
Query 1591 CATTTTTATTTTCCGCCACTGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGA 1650
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 CATTTTTATTTTCTGCCACCGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGA 1817
Query 1651 AACGGGATCATGAGTTCATCAATTGTGTTCAAGAGGGGACTGGGGAGACACATCAAAAGG 1710
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1818 AACGGGATCATGAGTTCATCAATTGTGTCCAAGAGGGCTCTGGGGAGACACATCAAAAGG 1877
Query 1711 TCACACAAATGTACATGATTGCATCACTGGATAGACATTTCTCGCTTCTATATGTGCTTC 1770
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1878 TCACACAAATGTACATGATTGCATCACTGGATAGACATTTTTCGCTTCTACATGTGCTTC 1937
Query 1771 TTAAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTA 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TTAAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTA 1997
Query 1831 TGGTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAACCTGAACGTCAGAGAGATCC 1890
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1998 TGGTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAGCCTGAACGTCAGAGAGATCC 2057
Query 1891 ATTCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGG 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 ATTCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGG 2117
Query 1951 CTATTATCCTTGTCACATCTGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCAT 2010
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2118 CTATTATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACCCTGATGTGTCAT 2177
Query 2011 TAGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAA 2070
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 TGGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAA 2237
Query 2071 CGGGGCGGAAAGGTAAGGAAGGGGAAGGAGTATTATTGTTGGCACCATGGGAAGAGTACT 2130
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2238 CCGGGCGGAAAGGGAAGGAAGGGGAAGGAGTCTTATTGTTGGCACCATGGGAAGAGTACT 2297
Query 2131 TTATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAG 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2298 TTATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAG 2357
Query 2191 AGGCTGTGAAAAGGGTGCAGAAAGGGCTAAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2250
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2358 AGGCTGTGAAAAGGGTGCAGAAAGGGCTGAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2417
Query 2251 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCA 2310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2418 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCA 2477
Query 2311 GACTGGTGGAGTTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCTA 2370
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2478 GACTGGTGGAGCTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCTA 2537
Query 2371 TCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGT 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2538 TCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGT 2597
Query 2431 AGATATTGttttttttACCTAGTGATCTACTTTGGTCTTAAAACTTTAGTGTTTTGTAAG 2490
|||| || | |||||| ||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 2598 AGAT-TT-TCTTTTTT-CCTAGTGATCTGCTTTGGTTTTAAAACTTTAATGTTTTGTAAG 2654
Query 2491 TGTA 2494
||||
Sbjct 2655 TGTA 2658
Score = 1195 bits (647), Expect = 0.0
Identities = 723/760 (95%), Gaps = 3/760 (0%)
Strand=Plus/Plus
Query 1 TCACCGGTCACCGACGACGGGAACTTGGTAGTTTACAGGAACAAGAAATGTCCTTGAAGT 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 TCACCGGTCACCGACGACGGGAACTTGGTAG-TTACAGGAACAAGAAATGTCCTCGAAGT 59
Query 61 TCCCTCTCGGTGTACGCTTCATCACTCATTCTCTTCCTTGTACTCGTCTCGCTTCCATGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCCCTCTCGGTGTACGCTTCATCACTCATTCTCTTCCTTGTACTCGTCTCGCTTCCATGA 119
Query 121 ATTCTGGCGCACTTATCTATTCATTTCGTTCCGTCCCTGTTCTATCCAAAGCCTTTCCTT 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 ATTCTGGCGCCCTTATCTATTCATTTCGTTCCGTTCCTGTTCTATCCAAAGCCTTTCCTT 179
Query 181 TTAGGTTAAAGTACATTGGATTAGGTTCCCGGGTCAA-TTTCTCAACCCGACCAGAGAGA 239
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 180 TTAGGTTAAAGTACATTGGATTAGGTTCCCGGGTCAACTTT-TCAACCCGACCAGAGAGA 238
Query 240 TCCCAACCCGAATTCGGGCGGCGAAGTGGAGCTGGAGGAGAGATTCGTGCGTCCAAGAGC 299
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 TCTCAACCCGAATTCGCGCGGCGAAGTGGAGCTGGAGGAGAGATTCGCGCGTCCAAGAGC 298
Query 300 TTGATTGAGGACGAGGCAGAGCTTAGTGATTGGGTGAGCGATTTGAGGACTAGTTCGTTG 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGATTGAGGATGAGGCAGAGCTTAGTGATTGGGTGAGCGATTTGAGGACTAGTTCGTTG 358
Query 360 CGTGGGAAGTTCACGAGTGACGAAGATAACTCGGCTCCAGAGGTGGTTCGTAGAAACGTA 419
|| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 359 CGCGGGAAGTTCACGAGCGACGAAGATAACGCGGATCCAGAGGTGGTTCGTAGAAACGTA 418
Query 420 GACAGGGACAACAGTAGGGGTCCAAGGAGGGGAAGTGTAGGCCAATCTGATAGGTTCGGT 479
|||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 419 GACAGGGACACCAGTAGGGGTCCAAGGAGAGGAAGGGAAGGCCAATCTGATAGGTTCGGT 478
Query 480 GGTGCGAAAAGGGGAAAGGAAGGTGAGATGGATAGGTTTGGGAGTCCGAACCGGAGGAGA 539
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 479 GGTGCGAAAAGGGGAAAGGAAGGTGAAATGGATAGGTTTGGGAGTCCGAACAGGAGGAGA 538
Query 540 ACCAGCGGCGAGCCGGCTGATTCGTTTAGGAACAAGCGGTTAGGTGATCGAGAAGGTGCA 599
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 539 ACCAGCGGCGAGCCTGCTGATTCGTTCGGGAACAAGCGGTTAGGTGATCGAGAAGGTTCA 598
Query 600 AGGAACGGTCGTGTCCAAGGAAAGAGTAGTGAGTCCTCTTTTCGTGGAAGGAATGATAGA 659
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 599 AGGAACGGTCGTGTTCAAGGAAAGAGTAGTGAGTCGTCTTTTCGTGGAAGGAGTGATAGA 658
Query 660 AATGTAGATTCAGGGTCGTCTTTTCGTGGAAGGAATGAGAGGAATGTAGATTCAGGGTCA 719
|||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||
Sbjct 659 AATGTAGATTCAGGGTCGTCTTTTCGTGGAAGGAGTGACAAAAATGTTGACTCAGGGTCG 718
Query 720 TCTTTTCGTGGAAGGAATGAGAGGAATGTAGATTCAGGGT 759
||||||||||| |||||||| || ||||||||||||||||
Sbjct 719 TCTTTTCGTGGTAGGAATGATAGAAATGTAGATTCAGGGT 758
Score = 176 bits (95), Expect = 9e-43
Identities = 117/128 (91%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 632 GTCCTCTTTTCGTGGAAGGAATGATAGAAATGTAGATTCAGGGTCGTCTTTTCGTGGAAG 691
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GTCGTCTTTTCGTGGTAGGAATGATAGAAATGTAGATTCAGGGTCGTCTTTTCGTGGAAG 774
Query 692 GAATGAGAGGAATGTAGATTCAGGGTCATCTTTTCGTGGAAGGAATGAGAGGAATGTAGA 751
|| ||| || |||||||| |||||||| |||||||||||||||| ||| || ||||||||
Sbjct 775 GAGTGATAGAAATGTAGACTCAGGGTCGTCTTTTCGTGGAAGGAGTGATAGAAATGTAGA 834
Query 752 TTCAGGGT 759
|||||||
Sbjct 835 CTCAGGGT 842
> AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794457-2797660 FORWARD LENGTH=1887
Length=1887
Score = 2006 bits (1086), Expect = 0.0
Identities = 1320/1434 (92%), Gaps = 12/1434 (1%)
Strand=Plus/Plus
Query 996 AAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCCACTCTCTCCCTTG 1055
||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 294 AAAACTTCAGATTCTTATTTGTCAAAGACAAGATTTGATCAGTTCCCACTGTCTCCCTTA 353
Query 1056 TCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACT 1115
|| |||||| || ||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 354 ACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACT 413
Query 1116 CTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTGGGAAA 1175
|||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 414 CTTCCTCTCATTCTCCAAGGTAAAGATATCCTTGCGAAGGCCAAAACAGGCACTGGGAAA 473
Query 1176 ACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCCCCCTGCAAGCCGG 1235
|| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 474 ACAGTTGCATTTTTGCTTCCATCAATTGAAGCTGTTATCAAAGCTCCTCCTGCAAGCCGT 533
Query 1236 GATAATAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCCAGT 1295
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 534 GATAATAGGCATCCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCTTGT 593
Query 1296 CAAGCTGCGGCAGAAGCAAACACCTTGCTGAAGTATCACCCATCTATTGGTGTTCAAGTT 1355
|||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 594 CAAGCTGCTGCAGAAGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTT 653
Query 1356 GTGATTGGAGGTACAAAACTTCCTACAGAGCAAAGGCG-TATGCAAACGAATCCTTGCCA 1414
||||||||||| || || |||||||| ||||||||||| | |||||| || |||||||||
Sbjct 654 GTGATTGGAGGCACTAAGCTTCCTACGGAGCAAAGGCGCT-TGCAAAAGAGTCCTTGCCA 712
Query 1415 GATCCTTGTGGCTACACCCGGAAGGCTCAAAGACCATATTGAGAACACTTCTGGATTTGC 1474
||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 713 GATTCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGC 772
Query 1475 AACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACAT 1534
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AACAAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACAT 832
Query 1535 GGGTTTCCGAAGGGATATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACATT 1594
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 833 GGGTTTCCGAAGGGAAATTGAGAGGATAATTGCTGCTGTTCCTAAGCAGAGACAAACATT 892
Query 1595 TTTATTTTCCGCCACTGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGAAACG 1654
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 893 TTTATTTTCCGCCACAGTATCTGATGAGGTCCGCCAAATATGCCATGTTGCTCTGAAACG 952
Query 1655 GGATCATGAGTTCATCAATTGTGTTCAAGAGGG-GACTGGGGAGACACATCAAAAGGTCA 1713
||||||||| ||| |||| |||||||||||||| | |||||||||| |||||||||||
Sbjct 953 GGATCATGAATTCGTCAACTGTGTTCAAGAGGGTG-CTGGGGAGACGCATCAAAAGGTTT 1011
Query 1714 CACAAATGTACATGATTGCATCACTGGATAGACATTTCTCGCTTCTATAT-GTGCTTCTT 1772
||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||
Sbjct 1012 CACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTATATGGT-CTTCTG 1070
Query 1773 AAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTATG 1832
||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1071 AAAAAACACATCACAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATG 1130
Query 1833 GTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAACCTGAACGTCAGAGAGATCCAT 1892
|| |||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||
Sbjct 1131 GTTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGTCAGAGAGATCCAT 1190
Query 1893 TCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAG-GC 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1191 TCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGAG- 1249
Query 1952 TATTATCCTTGTCACATCTGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCATT 2011
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1250 TATTATCCTTGTGACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCCTT 1309
Query 2012 AGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAAC 2071
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1310 AGTCGTACAGATGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAAC 1369
Query 2072 GGGGCGGAAAGGTAAGGAAGGGGAAGGAGTATTATTGTTGGCACCATGGGAAGAGTACTT 2131
|||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||
Sbjct 1370 TGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTACTT 1429
Query 2132 TATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCA-G 2190
| | || |||||||| |||||||||||||| |||||| | ||||||||||||||| | |
Sbjct 1430 TCTATCTTCTGTTAAGGACTTGCCCATCACAAAGTCTTCTTTACCGCCAATAGACC-ATG 1488
Query 2191 AGGCTGTGAAAAGGGTGCAGAAAGGGCTAAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2250
|||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 1489 AGGCTGTGAAAAAGGTGCAGAAAGGGCTTATCCAAGTGGAAATGACGAACAAGGAGGCGG 1548
Query 2251 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCA 2310
| |||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 1549 CATATCAGGCATGGTTGGGTTACTACAAATCGCAGAAGAAGATTGCTAGAGACACGACCA 1608
Query 2311 GACTGGTGGAGTTGGCCAATGAGTTTAGCCGCAGCATGGGACTT-GACAGCCCACCAGCT 2369
||||||||||||| || ||||||||||||||||| ||||||||| | || ||| || |||
Sbjct 1609 GACTGGTGGAGTTAGCTAATGAGTTTAGCCGCAGTATGGGACTTAG-CATCCCTCCGGCT 1667
Query 2370 ATCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGA 2423
||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1668 ATCCCTGTAAATATTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAGA 1721
> AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476511
REVERSE LENGTH=2476
Length=2476
Score = 1406 bits (761), Expect = 0.0
Identities = 1219/1441 (85%), Gaps = 28/1441 (2%)
Strand=Plus/Plus
Query 1005 GATTCTTACTTGTCTAAGACAAGATTTGATCAAT-TCCCACTCTCTCCCTTGTCGCTAAA 1063
|||||||| ||| ||||||||||||||||||| | | ||| | |||||||| ||||||||
Sbjct 1049 GATTCTTATTTGACTAAGACAAGATTTGATCACTAT-CCATTGTCTCCCTTATCGCTAAA 1107
Query 1064 AGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTAT 1123
|| ||||||||||| |||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 1108 GGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTAT 1167
Query 1124 CATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTGGGAAAACCGTTGC 1183
|||||| |||| || ||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct 1168 AATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGC 1227
Query 1184 ATTTTTGCTTCCAGCAATTGAAGCT-GTTATCAAATCTCCCCCTGCAAGCCGGGATAATA 1242
|||||||||||| ||||||||| | ||| |||||||||| ||| |||||| ||||||||
Sbjct 1228 GTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCGGATAATA 1286
Query 1243 GGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCCAGTCAAGCTG 1302
|| ||||||||| ||| ||||||| |||| |||||| | |||||||||| ||||||||
Sbjct 1287 AGCGACCCCCAATCCTTGCGCTTGTGATATGCCCTACTAGAGAACTTGCCAATCAAGCTG 1346
Query 1303 CGGCAGAAGCAAACACCTTGCTGAAGTATCACCCATCTATTGGTGTTCAAGTTGTGATTG 1362
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1347 CTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGATTG 1406
Query 1363 GAGGTACAAAACTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTTGCCAGATCCTT- 1421
||||||| | |||| | |||||||| |||||||||||| |||||||||||||| ||
Sbjct 1407 GAGGTACGAGACTTGGTTTAGAGCAAAAGCGTATGCAAACAAATCCTTGCCAGAT-TTTA 1465
Query 1422 GTGGCTACACCCGGAAGGCTCAAAGACCATATTGAGAACACTTCTGGATTTGCAACAAGA 1481
||||||||||| |||||||||||||||||||| |||||||| | || |||||||| ||
Sbjct 1466 GTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACGAGG 1525
Query 1482 TTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGG-TTT 1540
|| | ||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 1526 TTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGATATGGGCTTT 1585
Query 1541 C-CGAAGGGATATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACATTTT-TA 1598
| | |||| | |||||||||||||| | ||||| |||||| |||||||||| |||| ||
Sbjct 1586 CGC-AAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TTTTCTA 1642
Query 1599 TTTTCCGCCACTGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGAAA-CGGGA 1657
||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||||
Sbjct 1643 TTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTTGTTGCTCT-AAGGCGGGA 1701
Query 1658 TCATGAGTTCATCAATTGTGTTCAAGAGGGGACTGGGGAGACACATCAAAAGGTCACACA 1717
||| ||||| ||||||||||||| || || ||| ||||| |||||| |||||| |||
Sbjct 1702 TCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCAGACA 1761
Query 1718 AATGTACATGATTGCATCACTGGATAGACATTTCTCGCTTCTATATGTGCTTCTTAAAGA 1777
|||| ||||||||||||||||||| ||||||||||| ||||| || |||||| ||
Sbjct 1762 AATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTGTACACACTTCTTCGCGA 1821
Query 1778 ACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTATGGTGAC 1837
|||||| | ||| || ||||||||||| || | ||||||||||| || ||||| ||
Sbjct 1822 ACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGTACAACGGCCATGGTTAC 1881
Query 1838 AAGATTGGTGGCTGATCTGCTTAGTCAGCTAAACCTGAACGTCAGAGAGATCCATTCTAG 1897
|| ||| ||||||||||| ||| || |||||||| | ||||| |||||||||||||||||
Sbjct 1882 AAAATTAGTGGCTGATCTACTTGGTGAGCTAAACTTAAACGTGAGAGAGATCCATTCTAG 1941
Query 1898 AAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGGCTATT-A 1956
|||||||||||||||||| || || |||||| | |||||||| || ||||||| | || |
Sbjct 1942 AAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGAAAATCCAAGGGT-TTGA 2000
Query 1957 TCCTTGTCACATCTGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCA-TTAGTC 2015
| || || |||||||||||||||||||| || || ||||||||||||||| | || ||
Sbjct 2001 TTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCTGATGTGACCCTT-GTT 2059
Query 2016 GTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAACGGGG 2075
||||| | ||||||||| |||||| || || |||||||| |||||||| ||||| |||
Sbjct 2060 TTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAACCGGG 2119
Query 2076 CGGAAAGGTAAGGAAGGGGAAGG-AGTATTATTGTTGGCACCATGGGAAGAGTACTTTAT 2134
|| ||||| |||||||| ||||| | |||| ||||||||||||||||| || |||||| |
Sbjct 2120 CGAAAAGGAAAGGAAGGAGAAGGCA-TATTGTTGTTGGCACCATGGGAGGAATACTTTCT 2178
Query 2135 GTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAGAGGC 2194
|||||| ||||||| || |||||||| |||||||| || || ||||||||||||| |
Sbjct 2179 ATCATCTCTTAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCAGAAAC 2238
Query 2195 TGTGAAAAGGGTGCAGAAAGG-GCTAAGCCAAGTGGAAATGAAGAACAAGGAGGCGGCGT 2253
||| |||| |||||| ||||| ||| |||| || || |||| |||||| ||||||||||
Sbjct 2239 TGTAAAAAAGGTGCA-AAAGGCGCTTTGCCATGTCGAGATGAGGAACAAAGAGGCGGCGT 2297
Query 2254 ATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACAC-GACCAGA 2312
||||||| ||||||||||||||||| || ||||||||||||| |||||||| ||| ||
Sbjct 2298 ATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAGAC-AGG 2356
Query 2313 CTGGTGGAGTTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCTATC 2372
|| ||||||||||| || |||||||| || || ||||||||||||| || ||||||||
Sbjct 2357 CTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCCTCCAGCTATA 2416
Query 2373 CCCAAAAATGT-TC-TTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGT 2430
|| |||| | | || |||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2417 CC-AAAACT-TATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTTAGAGCCAAGT 2474
Query 2431 A 2431
|
Sbjct 2475 A 2475
> AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463069-23466451 REVERSE LENGTH=2612
Length=2612
Score = 65.8 bits (35), Expect = 2e-09
Identities = 154/208 (74%), Gaps = 22/208 (11%)
Strand=Plus/Plus
Query 1959 CTTGTCACATCTGATGTATCTGCTCGTGGTGTCGAT-TACCCTGATGTGT-CATTAGTCG 2016
||||||||||||||||||||||||||||| | || || || ||||| | | || ||
Sbjct 1921 CTTGTCACATCTGATGTATCTGCTCGTGGAAT-GAACTATCCAGATGT-TACTTTGGTTA 1978
Query 2017 TACAGATGGG-ATTGCC-A-TCAGACAGGGAGCAGTATATACATAGACTTGGCAGAACGG 2073
| ||| | || || || | | ||||| || |||||||||||| |||| || ||||| |
Sbjct 1979 TTCAGGTCGGTATA-CCGAGT--GACAGAGAACAGTATATACATCGACTAGGTAGAACTG 2035
Query 2074 GGCG-GAAAGGTAA-GGAAGGGGAAGGAGTA-TTATTG-TTGGCACCATGGGA-AGAGTA 2128
| | ||| || || ||| || |||||| | || ||| ||| | |||||||| ||| ||
Sbjct 2036 GAAGAGAA-GGAAAAGGA-GGAGAAGGATTGCTT-TTGATTG-CGCCATGGGAGAGA-TA 2090
Query 2129 CTTTATGTCATCTG-TTAAAGACTTGCC 2155
||| | | || | ||||||| |||||
Sbjct 2091 TTTTCT-TGATGAGCTTAAAGATTTGCC 2117
> AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576465-3580525 FORWARD LENGTH=2685
Length=2685
Score = 58.4 bits (31), Expect = 3e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1954 TTATCCTTGTCACATCTGATGTATCTGCTCGTGG 1987
|||| |||||||||||||||||||||||||||||
Sbjct 2075 TTATTCTTGTCACATCTGATGTATCTGCTCGTGG 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126069527759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5