BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487705
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08640.1 | Symbols: FLS, ATFLS1, FLS1 | flavonol synthase 1 ... 1784 0.0
> AT5G08640.1 | Symbols: FLS, ATFLS1, FLS1 | flavonol synthase
1 | chr5:2803958-2805447 FORWARD LENGTH=1334
Length=1334
Score = 1784 bits (966), Expect = 0.0
Identities = 1084/1140 (95%), Gaps = 11/1140 (1%)
Strand=Plus/Plus
Query 1 TACATATCCGCCATTGTTTCCGGCACCGAAAACTATACC--AAAAAGCCATGGAGGTCGA 58
||||||||||||||||||||||||| || |||| |||| ||||| |||||||||||
Sbjct 5 TACATATCCGCCATTGTTTCCGGCAACGCAAAC--TACCAAAAAAAATAATGGAGGTCGA 62
Query 59 AAGAGTCCAAGACATTTCATCTTCTTCTCTACTAACCGAAGCGATCCCGTTGGAATTCAT 118
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 63 AAGAGTCCAAGACATTTCATCTTCTTCTCTACTAACAGAAGCAATCCCGTTGGAGTTCAT 122
Query 119 CAGATCGGAAAAAGAACAACCGGCGATCACAACATTCCGAGGTCCAACGCCGACGATCCC 178
|||||| || ||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 123 CAGATCAGAGAAAGAACAACCAGCGATCACAACATTCCGAGGTCCAACGCCGGCGATTCC 182
Query 179 CGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAGGCGTGCGGTGGTGAAAGCGAG 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 CGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAGGCGCGCGGTGGTGAAAGCGAG 242
Query 239 TGAAGAATGGGGGCTTTTCCAAGTTGTTAACCACGGGATTCCGACGGAGCTGATACGGCG 298
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 243 TGAAGAATGGGGGCTATTCCAAGTGGTTAACCACGGGATTCCGACGGAGCTGATACGACG 302
Query 299 GTTACAGGACGTCGGAAGAAAATTCTTCGAGCTTCCTTCGTCGGAGAAAGAATCCGTCGC 358
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTTACAAGACGTCGGAAGAAAATTCTTCGAGCTTCCTTCGTCGGAGAAAGAATCCGTCGC 362
Query 359 GAAACCGGAAGATTCAAAAGACATTGAAGGATACGGAACAAAGCTTCAGAAAGATCCAGA 418
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TAAACCGGAAGATTCGAAAGACATTGAAGGATACGGAACAAAGCTTCAGAAAGATCCAGA 422
Query 419 AGGTAAAAAAGCTTGGGTCGATCATCTCTTCCACCGAATCTGGCCACCGTCATGCGTCAA 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 423 AGGTAAAAAAGCTTGGGTCGATCATCTCTTCCATCGAATCTGGCCACCGTCATGCGTCAA 482
Query 479 CTACAGATTCTGGCCTAAGAATCCACCTGAATACAGGGAGGTGAATGAAGAGTATGCAAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 483 TTACAGATTCTGGCCTAAGAATCCACCTGAATACAGGGAGGTGAATGAAGAGTATGCAGT 542
Query 539 GCAAGTAAAGAAGCTATCGGAGACGTTATTAGGGATTCTCTCGGAAGGATTAGGGTTAAA 598
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 543 GCATGTGAAGAAGCTATCGGAGACGTTATTAGGGATTCTCTCGGATGGATTAGGGTTAAA 602
Query 599 GCGTGACGCGTTGAGAGAAGGTCTCGGCGGAGAGATGGCGGAGTATATGATGAAGATTAA 658
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCGTGATGCGTTGAAAGAAGGTCTCGGCGGAGAGATGGCGGAGTATATGATGAAGATTAA 662
Query 659 TTATTACCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGGTGTACCGGCGCATACAGATCT 718
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 CTATTATCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGGTGTACCGGCTCATACAGATCT 722
Query 719 CAGTGGAATCACTCTTCTTGTTCCCAACGAAGTTCCTGGACTTCAAGTTTTCAAAGATGA 778
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 723 CAGTGGAATCACTCTTCTTGTTCCTAACGAAGTTCCTGGACTTCAAGTTTTCAAAGATGA 782
Query 779 TCATTGGTTCGATGCAGAGTATATTCCCTCCGCCGTCATTGTTCACATTGGCGATCAGAT 838
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 783 TCACTGGTTCGATGCAGAGTATATTCCCTCCGCCGTCATTGTTCACATCGGCGATCAGAT 842
Query 839 TCTGAGGCTGAGTAATGGGAGGTATAAGAATGTGTTGCATAGGACGACGGTGGATAAAGA 898
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 843 TCTGAGGTTGAGTAATGGGAGGTATAAAAATGTGTTGCATAGGACGACGGTGGATAAAGA 902
Query 899 GAAGACGAGGATGTCGTGGCCGGTTTTCTTGGAGCCTCCCCGTGAAAAGATCGTCGGACC 958
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 903 GAAGACGAGGATGTCGTGGCCGGTTTTCTTGGAGCCTCCCCGTGAAAAGATTGTTGGACC 962
Query 959 TTTACCGGAGTTAACCGGAGATGATAATCCTCCAAAGTTTAAACCTTTTGCTTTCAAGGA 1018
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 963 TTTACCGGAACTAACCGGAGATGATAATCCTCCAAAGTTTAAACCGTTTGCTTTCAAGGA 1022
Query 1019 TTACAGTTACCGCAAGCTCAATAAACTTCCTCTGGATTGAAGAAAA-TCAAAACCAAGA- 1076
|||||||||||||||||||||||||||||||||||||||| ||||| |||| || | ||
Sbjct 1023 TTACAGTTACCGCAAGCTCAATAAACTTCCTCTGGATTGA-GAAAAATCAATACGA-GAA 1080
Query 1077 GTAA-AATTTGTGGTTGTGGAAAAGGAAGTGGT-CGTTATTGAGTTGTTGTTTTCCCGCG 1134
| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1081 G-AATAATTTGTGGTTGTGGAATAGGAAGTGGTTCGTTATTGAGTTGTTGTTTTCCCGCG 1139
Score = 178 bits (96), Expect = 1e-43
Identities = 104/108 (96%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1134 GACATGTTTTTATTGTGTTGCGAAGCCTTTGCAAGTTATGTCGGACCATTTTTAGGCATT 1193
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1215 GACATGTTTTTATTGTGTTGCGATGCCTTTGCAAGTTATGTCGGACCATTTTTAGGCATT 1274
Query 1194 GGAAAGAGTAGGTTTGTATTTTGTAAATTTTTTACCTGTTACGGGAAA 1241
|||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 1275 GGAAAGAGTAGGTTTGTATTTTGTAAATTTTTAACCTGTCACGGAAAA 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5