BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487708
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08670.1 | Symbols: | ATP synthase alpha/beta family protei... 3179 0.0
AT5G08690.1 | Symbols: | ATP synthase alpha/beta family protei... 2706 0.0
AT5G08680.1 | Symbols: | ATP synthase alpha/beta family protei... 2392 0.0
> AT5G08670.1 | Symbols: | ATP synthase alpha/beta family protein
| chr5:2818117-2821176 REVERSE LENGTH=1976
Length=1976
Score = 3179 bits (1721), Expect = 0.0
Identities = 1842/1902 (97%), Gaps = 1/1902 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCAAACACACACCCACTCATGGCGTCTCGGAGAGTCTTATCATCGCTTCTCCGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4 TCTCTCTCAAACACACACCCACTCATGGCGTCTCGGAGAGTCTTATCATCTCTTCTCCGT 63
Query 61 TCATCTTCCGGCAGATCTGCTTCCAAATTAGGCAACCGTAACCCCAGGCTTCCTTCTCCT 120
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 64 TCATCTTCCGGTAGATCTGCCGCCAAATTAGGCAACCGTAACCCCAGGCTTCCTTCTCCT 123
Query 121 TCACCCGCGCGTCACGCCGCTCCATGTAGCTACCTCCTCGGCCGTGTCGCCGAGTACGCG 180
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 124 TCACCCGCGCGTCCCGCCGCTCCATGTAGCTACCTCCTCGGCCGCGTCGCCGAGTACGCG 183
Query 181 ACCTCTTCACCGGCAAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGAAAG 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 184 ACCTCTTCACCTGCAAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGGAAG 243
Query 241 AAGACCTATGATTACGGTGGCAAAGGCGCGATCGGGCGTGTTTGCCAGGTCATCGGTGCC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 244 AAGACCTATGATTACGGTGGCAAAGGTGCGATCGGGCGTGTTTGCCAGGTCATTGGTGCC 303
Query 301 ATTGTCGATGTGAGATTCGAGGATCAGGAAGGATTGCCTCCGATCATGACATCCCTCGAG 360
||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 304 ATTGTCGATGTGAGATTTGAGGATCAGGAAGGATTGCCACCAATCATGACATCTCTCGAG 363
Query 361 GTGCAGGATCACCCCACAAGGCTGGTGCTTGAGGTGTCTCACCATTTGGGTCAAAATGTC 420
||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||
Sbjct 364 GTGCAGGATCACCCCACAAGGCTAGTGCTTGAGGTGTCTCATCACTTGGGTCAGAATGTC 423
Query 421 GTCAGGACCATTGCTATGGATGGTACTGAGGGTCTTGTCCGTGGAAGGAAGGTTCTCAAC 480
||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 424 GTCAGGACCATTGCTATGGATGGTACTGAGGGTCTCGTTCGTGGAAGGAAAGTCCTCAAC 483
Query 481 ACTGGTGCTCCGATTACTGTACCTGTTGGAAGAGCTACTCTTGGACGTATCATGAATGTT 540
||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 484 ACTGGCGCTCCAATCACTGTACCTGTCGGAAGGGCTACTCTTGGACGTATCATGAATGTT 543
Query 541 CTTGGAGAACCCATCGACGAGAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCAC 600
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 544 CTTGGAGAACCTATTGACGAAAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCAC 603
Query 601 AGAGATGCTCCGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AGAGATGCACCGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATT 663
Query 661 AAGGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGTGGT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 664 AAGGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGT 723
Query 721 GCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCAAAAGCTCAT 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 724 GCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCCAAAGCTCAT 783
Query 781 GGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTAC 843
Query 841 AGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAGTCTGAGAGCAAGTGT 900
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 AGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAAAAGCAGTCTGAGAGCAAGTGT 903
Query 901 GCTCTAGTGTACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GCTCTAGTGTACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACT 963
Query 961 GGTTTGACTGTTGCCGAGTATTTCCGTGATGCCGAAGGCCAAGACGTCTTGCTTTTCATT 1020
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 964 GGTTTGACTGTTGCCGAGTATTTCCGTGATGCTGAAGGCCAAGACGTTTTGCTTTTCATT 1023
Query 1021 GACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCTTGGTCGTATC 1080
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1024 GACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTACTCGGTCGTATC 1083
Query 1081 CCGTCTGCTGTGGGCTACCAGCCAACTCTGGCTTCCGATCTTGGTGCTCTTCAAGAGAGA 1140
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1084 CCGTCTGCTGTGGGATACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGA 1143
Query 1141 ATTACTACCACCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 ATTACTACCACCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGAT 1203
Query 1201 GATTTGACTGATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GATTTGACTGATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTC 1263
Query 1261 TCAAGACAGATTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TCAAGACAGATTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCC 1323
Query 1321 CGTATGCTGTCACCTCACATTCTGGGAGAGGAGCACTACAACACGGCTCGTGGCGTGCAG 1380
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1324 CGTATGCTGTCACCTCACATTCTGGGAGAGGAGCATTACAACACGGCTCGTGGCGTGCAG 1383
Query 1381 AAAGTGCTACAGAACTACAAGAACTTGCAAGATATTATAGCCATTTTGGGAATGGATGAG 1440
||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1384 AAAGTTCTACAGAACTACAAGAACTTGCAAGATATTATTGCAATTTTGGGTATGGATGAG 1443
Query 1441 CTAAGTGAAGATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CTAAGTGAAGATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGT 1503
Query 1501 CAGCCATTCCACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAA 1560
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CAGCCGTTCCACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAA 1563
Query 1561 GAAAACATCAACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCTGAACAA 1620
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1564 GAAAATATCAACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAA 1623
Query 1621 TCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAA 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAA 1683
Query 1681 GAGTCAGCAGCTTAAGGGATTGATTCAGCTCTTTCATGCTTAATACTTCTCTTATTTTTC 1740
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1684 GAGTCAGCAGCTTAAGAGATTGATTCAGATCTTTCATGCTTAATACTTCTCTTTTTTTTC 1743
Query 1741 -TGACAATAACGaaaaaaaaaaaaCAATGCCTGCGACTCCCCGACCAAACGGAATCTGAG 1799
|||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1744 CTGACAATAACGAAAAAAAAAAACCAATGCGTGCGACTCTCCGACCAAACGGAATCTGAG 1803
Query 1800 TTCCGTAATTATAGCTTCTTTTGGTTCAAATTCCATGAGAGCTGGCAAGATGATACTGAA 1859
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 TTCCGTAATTATAGTTTCTTTTGGTTCAAATTCCATGAGAGCTGGCAAGATGATACTGAA 1863
Query 1860 CAGATCCATTTACTGTTACTCAAATTTTTGGTTGTTTTGCTT 1901
|||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1864 CAGATCCATTCACTGTTAATCAAATTTTTGGTTGTTTTGCTT 1905
> AT5G08690.1 | Symbols: | ATP synthase alpha/beta family protein
| chr5:2825713-2828662 FORWARD LENGTH=2007
Length=2007
Score = 2706 bits (1465), Expect = 0.0
Identities = 1668/1767 (94%), Gaps = 10/1767 (1%)
Strand=Plus/Plus
Query 12 CACACACCCACTCATGGCGTCTCGGAGAGTCTTATCATCGCTTCTCCGTTCATCTTCCGG 71
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 14 CACACACCCACTCATGGCGTCTCGAAGAGTTTTATCATCTCTTCTCCGTTCATCTTCCGG 73
Query 72 CAGATCTGCTTCCAAATTAGGCAACCGTAACCCCAGGCTTCCTTCTCCTTCACCCGCGCG 131
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 74 TAGATCTGCCGCCAAATTAGTCAACCGAAACCCCAGGCTTCCTTCTCCTTCACCCGCGCG 133
Query 132 TCACGCCGCTCCATGTAGCTACCTCCTCGGCCGTGTCGCCGAGTACGCGACCTCTTCACC 191
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 134 TCACGCCGCTCCATGTAGCTACCTCCTCGGCCGCGTCGCCGAGTATGCGACCTCTTCACC 193
Query 192 GGCAAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGA-GGGAAAGAAGACCTATG 250
||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||
Sbjct 194 GGCAAGCTCTGCTGCGCCATCCTCTGCTCCTGCTAAGGATGAGGGGAAA-AAGACCTATG 252
Query 251 ATTACGGTGGCAAAGGCGCGATCGGGCGTGTTTGCCAGGTCATCGGTGCCATTGTCGATG 310
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 253 ATTACGGTGGCAAAGGTGCGATCGGGCGTGTTTGTCAGGTCATCGGTGCCATTGTCGATG 312
Query 311 TGAGATTCGAGGATCAGGAAGGATTGCCTCCGATCATGACATCCCTCGAGGTGCAGGATC 370
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 313 TGAGATTCGAGGATCAGGAAGGATTGCCTCCGATCATGACATCTCTTGAGGTTCAGGATC 372
Query 371 ACCCCACAAGGCTGGTGCTTGAGGTGTCTCACCATTTGGGTCAAAATGTCGTCAGGACCA 430
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 373 ATCCCACAAGGCTGGTGCTTGAGGTGTCTCATCATTTGGGTCAAAATGTCGTTAGGACCA 432
Query 431 TTGCTATGGATGGTACTGAGGGTCTTGTCCGTGGAAGGAAGGTTCTCAACACTGGTGCTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTGCTATGGATGGTACTGAGGGTCTTGTCCGTGGAAGGAAGGTTCTCAACACTGGTGCTC 492
Query 491 CGATTACTGTACCTGTTGGAAGAGCTACTCTTGGACGTATCATGAATGTTCTTGGAGAAC 550
| || ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 493 CAATCACTGTACCTGTTGGAAGAGCTACCCTTGGCCGTATCATGAATGTGCTTGGAGAAC 552
Query 551 CCATCGACGAGAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCACAGAGATGCTC 610
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 553 CCATTGACGAGAGAGGCGAAATCAAGACCGAGCATTACTTACCTATTCACAGAGATGCTC 612
Query 611 CGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATTAAGGTTGTTG 670
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CGGCTTTGGTTGATCTAGCCACTGGGCAAGAGATCCTGGCCACTGGTATTAAGGTTGTTG 672
Query 671 ATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGTGGTGCTGGTGTTG 730
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 673 ATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGTGCTGGTGTTG 732
Query 731 GGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCAAAAGCTCATGGTGGTTTCT 790
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 733 GGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCCAAAGCTCATGGTGGGTTCT 792
Query 791 CTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTACAGAGAAATGA 850
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 793 CTGTGTTTGCTGGTGTGGGGGAACGAACCCGTGAGGGCAATGACTTGTACAGAGAAATGA 852
Query 851 TTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAGTCTGAGAGCAAGTGTGCTCTAGTGT 910
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 853 TTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAGTCTGAGAGCAAATGTGCCCTAGTGT 912
Query 911 ACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACTGGTTTGACTG 970
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 913 ATGGACAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGACTGACTGGTTTGACTG 972
Query 971 TTGCCGAGTATTTCCGTGATGCCGAAGGCCAAGACGTCTTGCTTTTCATTGACAACATTT 1030
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 973 TGGCTGAGTATTTCCGTGATGCTGAAGGCCAAGATGTCTTGCTTTTCATTGACAACATTT 1032
Query 1031 TCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCTTGGTCGTATCCCGTCTGCTG 1090
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1033 TCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCTCGGTCGTATTCCGTCTGCTG 1092
Query 1091 TGGGCTACCAGCCAACTCTGGCTTCCGATCTTGGTGCTCTTCAAGAGAGAATTACTACCA 1150
|||| |||||||||||||||||||| |||||||||||||| |||||| |||| || ||||
Sbjct 1093 TGGGTTACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTGCAAGAGCGAATCACAACCA 1152
Query 1151 CCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGATGATTTGACTG 1210
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1153 CCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTCCCTGCTGATGATTTGACGG 1212
Query 1211 ATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTTTCAAGACAGA 1270
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1213 ATCCTGCTCCTGCCACAACTTTTGCTCACTTGGACGCCACAACCGTGCTGTCAAGACAGA 1272
Query 1271 TTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCCCGTATGCTGT 1330
|||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1273 TTTCTGAGCTCGGTATCTATCCTGCTGTGGATCCTTTGGATTCGACATCCCGTATGCTCT 1332
Query 1331 CACCTCACATTCTGGGAGAGGAGCACTACAACACGGCTCGTGGCGTGCAGAAAGTGCTAC 1390
| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 1333 CCCCCCACATTCTGGGTGAGGAGCACTACAACACTGCTCGTGGTGTGCAGAAAGTGTTGC 1392
Query 1391 AGAACTACAAGAACTTGCAAGATATTATAGCCATTTTGGGAATGGATGAGCTAAGTGAAG 1450
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1393 AGAACTACAAAAATTTGCAAGATATTATTGCCATTTTGGGAATGGATGAGCTAAGTGAAG 1452
Query 1451 ATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGTCAGCCATTCC 1510
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 ATGACAAGCTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGTCAGCCATTCC 1512
Query 1511 ACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAAGAAAACATCA 1570
| ||||||||||||||||| ||||||||||||||||| || || ||||| ||||||||||
Sbjct 1513 ATGTTGCTGAGATCTTCACGGGTGCCCCTGGAAAATACGTTGATCTTAAGGAAAACATCA 1572
Query 1571 ACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCTGAACAATCGTTTTACA 1630
|||||||||||||| | | || || ||||||||||||||||| ||||||||||||||||
Sbjct 1573 ACAGTTTCCAGGGTCTACTCGACGGTAAGTACGATGATCTTTCCGAACAATCGTTTTACA 1632
Query 1631 TGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAGAGTCAGCAG 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAGAGTCAGCAG 1692
Query 1691 CTTAAGGGATTGATTCAGCTCTTTCAT--GCTTAATACTTCTCTTATT-TTTC-T-GACA 1745
||||||| ||||||||| ||||||||| || ||||||||||||| || ||| | ||||
Sbjct 1693 CTTAAGGAATTGATTCATCTCTTTCATATGCATAATACTTCTCTTCTTCTTTTGTTGACA 1752
Query 1746 ATAACGaaaaaaaaa-aa-aC-AATGC 1769
|||||||||||| || || || |||||
Sbjct 1753 ATAACGAAAAAACAACAAGACCAATGC 1779
> AT5G08680.1 | Symbols: | ATP synthase alpha/beta family protein
| chr5:2821928-2824966 FORWARD LENGTH=2027
Length=2027
Score = 2392 bits (1295), Expect = 0.0
Identities = 1709/1905 (90%), Gaps = 44/1905 (2%)
Strand=Plus/Plus
Query 16 CACC-CACTCATGGCGTCTCGGAGAGTCTTATCATCGCTTCTCCGTTCATCTTCCG-GCA 73
|||| || |||||||| |||| || |||||||||||||||||||||| |||| || | |
Sbjct 55 CACCACAGTCATGGCGAGTCGGCGAATCTTATCATCGCTTCTCCGTTCTTCTT-CGAGTA 113
Query 74 GATCTGCTTCCAAA------TT-A--GGCAACCGTAACCCCAGGCTTCCTTCTCCTTC-- 122
||||| |||| ||| || | || | ||| ||||| |||||| || ||| |
Sbjct 114 GATCTACTTCTAAATCCTCCTTGATCGGGAGCCGAAACCCGAGGCTT--TTATCCCCCGG 171
Query 123 ACCCGCGCGT-CACGCCGCTCCATGTAGCTAC-CTCCTCGGCCGTGTCGCCGAGTACGCG 180
||||||| | | |||||||||||| | || ||||| ||||| ||||||||||| ||
Sbjct 172 TCCCGCGCATGGA-GCCGCTCCATGT-GGGACTCTCCTTGGCCGAGTCGCCGAGTATTCG 229
Query 181 ACCTCTTCACCGGC-AAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGAAA 239
|| ||||| ||||| || || ||||| |||||||||||||||||||| |||||||||||
Sbjct 230 ACTTCTTCTCCGGCTAA-TTCGGCTGCACCATCTTCTGCTCCTGCTAAAGATGAGGGAAA 288
Query 240 GAAGACCTATGATTACGGTGGCAAAGGCGCGATCGGGCGTGTTTGCCAGGTCATCGGTGC 299
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 289 GAAGACCTATGATTACGGTGGCAAAGGCGCGATCGGGCGTGTGTGTCAGGTTATTGGTGC 348
Query 300 CATTGTCGATGTGAGATTCGAGGATCAGGAAGGATTGCCTCCGATCATGACATCCCTCGA 359
|||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 349 CATTGTTGATGTGAGATTCGAAGATCAGGAGGGATTGCCTCCGATCATGACATCTCTCGA 408
Query 360 GGTGCAGGATCACCCCACAAGGCTGGTGCTTGAGGTGTCTCACCATTTGGGTCAAAATGT 419
||| |||||||| || |||||| |||| |||||||||||||| || ||||||||||||||
Sbjct 409 GGTACAGGATCATCCAACAAGGTTGGTCCTTGAGGTGTCTCATCACTTGGGTCAAAATGT 468
Query 420 CGTCAGGACCATTGCTATGGATGGTACTGAGGGTCTTGTCCGTGGAAGGAAGGTTCTCAA 479
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 469 CGTTAGGACCATTGCTATGGATGGTACTGAGGGTCTCGTCCGTGGAAGGAAGGTTCTCAA 528
Query 480 CACTGGTGCTCCGATTACTGTACCTGTTGGAAGAGCTACTCTTGGACGTATCATGAATGT 539
|||||||||||| || ||||| ||||||||||| || || ||||||||||||||||| ||
Sbjct 529 CACTGGTGCTCCAATCACTGTTCCTGTTGGAAGGGCCACCCTTGGACGTATCATGAACGT 588
Query 540 TCTTGGAGAACCCATCGACGAGAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCA 599
|||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 589 TCTTGGAGAACCTATTGACGAGAGAGGCGAAATTAAGACCGAGCATTACTTACCCATTCA 648
Query 600 CAGAGATGCTCCGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTAT 659
|||||| ||||| |||||||||||| | || || || |||||||| || || ||||||||
Sbjct 649 CAGAGACGCTCCAGCTTTGGTTGATTTGGCCACCGGTCAAGAGATTCTCGCTACTGGTAT 708
Query 660 TAAGGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGTGG 719
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 709 TAAGGTTGTTGATCTCCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGGCTTTTTGGCGG 768
Query 720 TGCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCAAAAGCTCA 779
|||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 769 TGCTGGTGTTGGGAAAACAGTGCTCATTATGGAACTGATTAACAATGTTGCCAAAGCTCA 828
Query 780 TGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTA 839
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 829 TGGTGGTTTCTCCGTGTTTGCTGGTGTGGGAGAACGGACCCGTGAAGGCAATGATTTGTA 888
Query 840 CAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAGTCTGAGAGCAAGTG 899
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 889 CAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGAGAGAAACAGTCTGAGAGCAAATG 948
Query 900 TGCTCTAGTGTACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGAC 959
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 949 TGCCCTAGTGTATGGACAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGACTGAC 1008
Query 960 TGGTTTGACTGTTGCCGAGTATTTCCGTGATGCCGAAGGCCAAGACGTCTTGCTTTTCAT 1019
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1009 TGGTTTGACTGTTGCTGAGTATTTCCGTGATGCTGAAGGCCAAGATGTCTTGCTTTTCAT 1068
Query 1020 TGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCTTGGTCGTAT 1079
||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1069 TGACAACATCTTCCGTTTCACCCAGGCCAACTCTGAAGTGTCTGCGTTGCTCGGTCGTAT 1128
Query 1080 CCCGTCTGCTGTGGGCTACCAGCCAACTCTGGCTTCCGATCTTGGTGCTCTTCAAGAGAG 1139
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1129 CCCGTCTGCTGTGGGGTACCAGCCAACTCTGGCTTCCGATCTTGGTGCTCTTCAAGAGCG 1188
Query 1140 AATTACTACCACCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGA 1199
||| || |||||||||||||| || || ||||| ||||||||||||||||| ||||||||
Sbjct 1189 AATCACAACCACCAAGAAAGGTTCAATTACCTCTGTCCAAGCCATCTATGTCCCTGCTGA 1248
Query 1200 TGATTTGACTGATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCT 1259
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1249 TGATTTGACAGATCCTGCTCCTGCCACAACTTTTGCTCACTTGGATGCCACAACTGTGCT 1308
Query 1260 TTCAAGACAGATTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1309 TTCAAGACAGATTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCGACGTC 1368
Query 1320 CCGTATGCTGTCACCTCACATTCTGGGAGAGGAGCACTACAACACGGCTCGTGGCGTGCA 1379
||||||||| || || |||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 1369 CCGTATGCTCTCGCCCCACATTCTAGGTGAGGAGCACTACAACACAGCTCGTGGTGTGCA 1428
Query 1380 GAAAGTGCTACAGAACTACAAGAACTTGCAAGATATTATAGCCATTTTGGGAATGGATGA 1439
||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1429 GAAAGTGTTGCAGAATTACAAGAATTTGCAAGATATTATCGCCATTTTGGGAATGGATGA 1488
Query 1440 GCTAAGTGAAGATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAG 1499
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GCTAAGTGAAGATGACAAGCTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAG 1548
Query 1500 TCAGCCATTCCACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAA 1559
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TCAGCCATTCCATGTTGCTGAAATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAA 1608
Query 1560 AGAAAACATCAACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCTGAACA 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1609 AGAAAACATCAACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACA 1668
Query 1620 ATCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAA 1728
Query 1680 AGAGTCAGCAGCTTA-AGGGATTGATTCAGCTCTTTCAT--GCTTAATACTTCTCTTATT 1736
||||||||||||||| | | | ||| || ||||| ||| ||||||||| | ||| ||
Sbjct 1729 AGAGTCAGCAGCTTAGAAGC-TGGATCCATCTCTTGCATATGCTTAATACCTGTCTG-TT 1786
Query 1737 T-TTCTGACAATAACGaaaaaaaaaaaaCAA-TGCCTGCGACT--CCC-CGACCAAACGG 1791
| || ||||||||||||||| |||||||| | |||||| || | ||| | ||||| |||
Sbjct 1787 TCTTGTGACAATAACGAAAAGAAAAAAACCACTGCCTGTGAGTTACCCAC-ACCAAGCGG 1845
Query 1792 AATCTGAGTTCCGTAATTATAGCTTCTTTTGGTTCAAATTCCATGAGAGCTGGCAAGATG 1851
||| ||||||||||| |||||| |||||| | || |||| |||||||| | |||||
Sbjct 1846 AATTTGAGTTCCGTATTTATAGTTTCTTTCG----AA-TTCCTTGAGAGCTA-CGAGATG 1899
Query 1852 ATACTGAACAGATCCAT--TTAC-T-GTTACTCAAATTTTTGGTT 1892
|| ||||||| | || | || | | || ||||| ||||||||||
Sbjct 1900 ATGCTGAACATACCCTTCATTCCCTTGT-ACTCAGATTTTTGGTT 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94126021875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5