BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487713
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08710.1 | Symbols: | Regulator of chromosome condensation ... 2375 0.0
> AT5G08710.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr5:2834743-2838090 REVERSE LENGTH=1644
Length=1644
Score = 2375 bits (1286), Expect = 0.0
Identities = 1358/1394 (97%), Gaps = 0/1394 (0%)
Strand=Plus/Plus
Query 140 AATCACATTTCCTTTTGATTTCTACAAGTGAAAATGTTGACTAGAGCCATCGGACGAGTT 199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AATCACATTTTCTTTTGATTTCTACAAGTGAAAATGTTGACTAGAGCCATCGGACGAGTT 251
Query 200 CGAATTCCTGTGTCGAGGATTCAGGGATCGAATAATTCGAGTGGGTTTTTGAAAGATTCG 259
||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||
Sbjct 252 CGAATTCCTGTGTCGAGGATTCAGGGATCGAATTGTACGAGTGGGCTTTTAAAAGATTCG 311
Query 260 AAATTGGGTCCGATTGGTGTTTTCTGTAGAAGATGGTTATCGAACGAGAGCGGGAAACGA 319
|||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||
Sbjct 312 AAATTGGGTCCGATTGGTGTTTGCTGTAGCAGATGGGTATCGAGCGAGAGCGGGAAACGA 371
Query 320 TTTGCGGCAATGTGGGGAAGTGGAGATTACGGCAGATTAGGGCTCGGAAACTTGGATTCT 379
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TTTGCGGCGATGTGGGGAAGTGGAGATTACGGCAGATTAGGGCTCGGAAACTTGGATTCT 431
Query 380 CAGTGGACACCTGCCGTTTGCTCTGCCTTGAGTGATCACAGTATCAGAGCTGTCGCTTGC 439
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 432 CAGTGGACACCTGCCGTTTGCTCTGCCTTGAGTGATCACAGTATCACAGCTGTCGCTTGC 491
Query 440 GGTGGAGCTCACACTCTGTTTCTCACCGAAACGAGGAGAGTCTTTGCAACGGGTCTTAAT 499
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GGCGGAGCTCACACTCTGTTTCTCACCGAAACGAGGAGAGTCTTTGCAACGGGTCTTAAT 551
Query 500 GATTGTGGTCAACTTGGCGTATCAGATGTTAAAAGTCATGCTATGGATCCGCTTGAAGTT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GATTGTGGTCAACTTGGCGTATCAGATGTTAAAAGTCATGCTATGGATCCGCTTGAAGTT 611
Query 560 TCTGGACTAGAAAAGGATATTCTGCACATCTCAGCTGGTTATTATCACTCCGCTGCTATT 619
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 612 TCTGGACTAGATAAGGATATTCTGCACATTTCAGCTGGTTATTATCACTCCGCTGCTATT 671
Query 620 ACAGTTGATGGAGAACTCTACATGTGGGGAAAGAACTCAAGTGGACAGCTTGGACTGGGA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ACAGTTGATGGAGAACTCTACATGTGGGGAAAGAACTCAAGTGGACAGCTTGGACTGGGA 731
Query 680 AAAAAGGCTGCAAGAGTGGTACGTGTACCAACTAAAGTGCAAGCTCTGCATGGAATCACC 739
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 732 AAAAAGGCTGCAAGAGTGGTACGTGTACCAACTAAAGTGGAAGCTCTGCATGGCATCACC 791
Query 740 ATACAATCCGTGGCTTTGGGTTCAGAGCATTCAGTTGCTGTTACTGATGGAGGTGAAGTC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ATACAATCCGTGGCTTTGGGTTCAGAGCATTCAGTTGCTGTTACTGATGGAGGTGAAGTC 851
Query 800 CTGAGTTGGGGAGGAGGGGGCTCTGGAAGACTTGGCCACGGTCACCAGTCCAGTCTTTTT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CTGAGTTGGGGAGGAGGGGGCTCTGGAAGACTTGGCCACGGTCACCAGTCCAGTCTTTTT 911
Query 860 GGCATCTTAAGAAGTAACAGTGAGTTTACTCCAAGGCTTATTAAGGAACTTGAGGGGATC 919
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 912 GGCATCTTAAGAAGTAACAGTGAGTTTACTCCAAGGCTTATCAAGGAACTTGAGGGGATC 971
Query 920 AAGGTTAAAAATGTTGCTGCTGGTCTGCTGCATTCAGCATGCACTGATGAGAATGGCTCT 979
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AAGGTCACAAATGTTGCTGCTGGTCTGCTGCATTCAGCATGCACTGATGAGAATGGCTCT 1031
Query 980 GCTTTCATGTTCGGAGAGAGATCTATAAACAAGATGGGCTTCGGAGGAGTAAGAAATGCC 1039
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1032 GCTTTCATGTTCGGAGAGAAATCTATAAACAAGATGGGCTTTGGAGGAGTAAGAAATGCC 1091
Query 1040 ACAACACCATCGATTATCAGTGAAGTACCCTATGCAGAAGGAGTTGCATGTGGTGGCTAC 1099
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1092 ACAACACCATCGATTATCAGTGAAGTACCATATGCAGAAGAAGTTGCATGTGGTGGCTAC 1151
Query 1100 CATACATGTGTTGTTACAAGAGGTGGGGAGCTTTACACCTGGGGATCAAACGAAAATGGG 1159
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1152 CACACATGTGTAGTTACAAGAGGTGGGGAGCTTTACACCTGGGGCTCAAACGAAAATGGG 1211
Query 1160 TGCCTTGGAACAAATTCAACATATGTCTCACACTCACCTGTGAGAGTTGAAGGTCCTTTC 1219
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1212 TGCCTTGGAACAGATTCAACGTATGTCTCACACTCCCCTGTGAGAGTTGAAGGTCCTTTC 1271
Query 1220 TTGGAGTCTACTGTATCTCAGGTATCTTGTGGGTGGAAGCACACTGCAGCTATTTCAGAT 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TTGGAGTCTACTGTATCTCAGGTATCTTGTGGGTGGAAGCACACTGCAGCTATTTCAGAT 1331
Query 1280 AACAAGGTCTTCACCTGGGGCTGGGGAGGCTCTCACGGCACATTCTCTGTTGATGGACAT 1339
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1332 AACAATGTCTTCACCTGGGGCTGGGGAGGATCTCACGGCACATTCTCTGTTGATGGACAT 1391
Query 1340 TCCTCTGGTGGACAATTGGGCCATGGTAGTGATGTAGACTATGCAAGACCAGCAATGGTG 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 TCCTCTGGTGGACAATTGGGCCATGGTAGTGATGTAGACTATGCAAGACCAGCAATGGTG 1451
Query 1400 GACTTGGGAAAGAATGTAAGAGCAGTGCATATATCTTGTGGCTTCAATCATACAGCAGCA 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 GACTTGGGAAAGAATGTAAGAGCAGTGCATATATCTTGTGGCTTCAATCATACAGCAGCA 1511
Query 1460 GTTCTTGAACATTTTTGAAGACTCAGTCTCAATTTCATATCATATACAGATGTTTGGTTT 1519
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||
Sbjct 1512 GTTCTTGAACATTTTTGAAGACTCGGTCTCAAGTTAATATCATATACAGATGTTTAGTTT 1571
Query 1520 ATTCTTGCTTAAAC 1533
||||||||||||||
Sbjct 1572 ATTCTTGCTTAAAC 1585
Score = 202 bits (109), Expect = 9e-51
Identities = 130/140 (93%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 1 ATTCTAGAGACTTTCAATAACGGGAAGACGTAGCATTCTCGCTGTCCATCAGTTTCTTCT 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATTCTAGAGACTTTCAATAACGGGAAGACGTAGCATTCTTGCTATCCATCAGTTTCTTCT 60
Query 61 TCCATCTTCTTGATCATCATATGTGATTCCATTTACAAGTTCAATCTCTTCATGAAAAAT 120
||| | || ||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 61 TCCTTGTTGTTGATCATCAT--GTGATTCCATTTACGAGTTCAATCTCTCCATGAAAAAT 118
Query 121 CCAGTCTCTTTTCAAACGGA 140
| ||||||||||||||||||
Sbjct 119 CTAGTCTCTTTTCAAACGGA 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5