BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487715
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08730.1 | Symbols: ATARI16, ARI16 | IBR domain-containing p... 1945 0.0
> AT5G08730.1 | Symbols: ATARI16, ARI16 | IBR domain-containing
protein | chr5:2845824-2847415 REVERSE LENGTH=1503
Length=1503
Score = 1945 bits (1053), Expect = 0.0
Identities = 1362/1510 (90%), Gaps = 25/1510 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCCGATGGTCAGAAATACTCTGTTCTTGAGAAAACACAAGTTCGTGAGAAGATG 60
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1 ATGGAAGCCGATGGTCAGAAATACTCTGTGCTTGCGAAAACACAAGTCCGTGAGAAGATG 60
Query 61 ATGAAAGAAATCGAACAGATCTCGGAAGTCTTCTCGGTTTCAAAATCCGACGCAACCGTA 120
||||||||||| |||||||||||||||||||||| ||| |||||||| || ||||||||
Sbjct 61 ATGAAAGAAATTGAACAGATCTCGGAAGTCTTCTTGGTGTCAAAATCGGATGCAACCGTC 120
Query 121 ATCCTAA-TCTGTCTCCGATGGAACTCGTTTAAGGCTTCAGATCTTCTTGGTGACAACAA 179
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCTAATTC-GTCTCGGATGGAACTCGTTTAAGGCTTCAGATCTTCTTGGTGACAACAA 179
Query 180 GAAGAAGTTTCTGGCGAAGTTAGGGCTGGTTCGAGTTTTCAATTCCAACTCTTCTTCTGC 239
| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||
Sbjct 180 GGAGAAGTTTCTGGCGAAGTTAGGGTTGGCTCGAGTTCTCAATTCCAACTCTTCTTCAGC 239
Query 240 AGATCGTGAGACGGGTGATGGAGATTACTTAGTCTCCACGCCCTTTTGCTCACACAAGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGATCGTGAGACGGGTGATGGAGATTACTTAGTCTCCACGCCCTTTTGCTCACACAAGTT 299
Query 300 TTCAACAACTTGCTGGAGTGAATATCTCAGCGATGCTCTGGAGAAGAACAAGGAGGAGAG 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 300 TTCAACAACTTGCTGGAGTGAATATCTCAGCGATGCTCTGAAGAAGAACAAGGAGCAGAG 359
Query 360 AGGACTCATCTCTTGCCTTAACCAAGACTGTGTCGCTTCCGTTGGACCCGATACGATCGA 419
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 360 AGGACTCATCTCTTGCCTTAGCCAAGACTGTGTCGCCTCTGTTGGACCCGATACGATCGA 419
Query 420 AAAACTCACTGAGCAAGTGAAGGTGATGTACGAGAATTATGCTCTCGAATCATTCATGGA 479
||||||| |||| |||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 420 GCAACTCACAGAGCCAGTGAAGGAGATGTACGAGAATTATATTCTCGAATCCTTCATGGA 479
Query 480 GTGCCATAAGGGAACGATCAAATGGTGTCCTGCATCGGGGTGTGAATACGCTATCGAGCT 539
|||||| |||| ||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 480 GTGCCACAAGGCAACGATCAAATGGTGTCCTGCTTCGGGTTGTGAATACGCCGTCGAGCT 539
Query 540 TCAGGAGGATGGTAATGAAGATAATGTGA-C--TGTGGTTTGTTTGTGCGGCCACACCTT 596
||||||||||||||||||||||||||| | | |||||| |||||||||||||| |||||
Sbjct 540 TCAGGAGGATGGTAATGAAGATAATGTCATCAGTGTGGTCTGTTTGTGCGGCCATACCTT 599
Query 597 CTGCTGGACATGCCGGCTTGAGTCACACCGACCGGTGTCTTGCAAAAAAGCATCAATTTG 656
||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 600 CTGTTGGACATGCGGGCTCGAGTCACACCGTCCGGTGTCTTGCAAAAAGGCATCAATTTG 659
Query 657 GTGGACGTACCTGTTGGATCAGTCAAGAAGCATTTCTTGGATCCATGCAAACACCAAACC 716
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 GTGGACGTACCTGTTGGATCAGTCAAGAAGCATTTCTTGGATCCATACAAACACCAAAAG 719
Query 717 TTGTCCCAATTGCAAGAGTCCTGTGCAGCAGAATGGTGATCCTGATTACAGGCTCATCAC 776
||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 720 TTGTCCCAAGTGCAAGATTCCTGTGCAGCAGAATGGTGATCCTAATTACAGACTCATTAA 779
Query 777 TTGTATATGCAGTCATAGCTTCTGTTGGATCTGCTTGCGCACGGAGGAAGACCATAATGG 836
|||||| |||||| ||| ||||||||||||||||||||||||||||||| | ||| | ||
Sbjct 780 TTGTATCTGCAGTAATAACTTCTGTTGGATCTGCTTGCGCACGGAGGAACAGCATCAGGG 839
Query 837 GAACTGGAACTGTGCTCCAGTCACTGTTCCAGCTGCGGATCCTACAACCGCCGAATTCTC 896
||||||||| ||| |||||||| ||||||||||||||| |||| | |||| ||||||||
Sbjct 840 GAACTGGAATTGTTCTCCAGTCGCTGTTCCAGCTGCGGGTCCTTCTACCGTTGAATTCTC 899
Query 897 TCACATTCTCCACCTGAATCTGTGGGAAGG-AGGTCATGAAGCATTGGAGAAGGCTAAGT 955
|| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 900 ACAGATTCTCCACCTGAATCTGTGGGA-GGCAGGTCATGAAGCATTGAAGAAGGCTAAGT 958
Query 956 CCAAGCTGAGAGCCTTAGAGGAAAAAACCATTCCGAAACTAGTT-GAGAATTGTGGATTG 1014
||||||||||||||||||||||||||| |||||||||||| | | ||||| || ||| |
Sbjct 959 CCAAGCTGAGAGCCTTAGAGGAAAAAATCATTCCGAAACT-GATCGAGAACTGCGGAGCG 1017
Query 1015 AGCGAGCTGGACATTAGGACAGTAAGAGAAGCAGGGATACTTAGTGTTCAGTGCAGGCAG 1074
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 ACCGAGCTGGACATTAGGACAGTAAGAGAAGCAGGGATGCTTAGTGTTCAGTGCAGGCAG 1077
Query 1075 GTACTGAAATGGAGCTGTGTTTTTGACTACT-TCATAACCGAGTACGAAAGCACGAAGAA 1133
|||||||||||||| || || ||||| |||| | |||| |||||||||||||||||||||
Sbjct 1078 GTACTGAAATGGAGTTGCGTATTTGATTACTCT-ATAATCGAGTACGAAAGCACGAAGAA 1136
Query 1134 GCAGTACAC-GAAACACCTCATAGGTCAAGCGAGCGCAATGCTTTGTACGCACGAAGGGA 1192
||||||| | |||||||||| || || |||||| |||||||||||| |||||||||||
Sbjct 1137 GCAGTAC-CTGAAACACCTCCGAGCTCTGGCGAGCACAATGCTTTGTATGCACGAAGGGA 1195
Query 1193 AGCTTGATGAGTCGATGTATCGAGCCCTCTCAGGTGGAGATTTCACTTTCTTTAAGCACA 1252
|||||||||||| ||| ||| |||||||||| || |||||||||| || ||||||||
Sbjct 1196 AGCTTGATGAGTTGATACATCTAGCCCTCTCACCTGAAGATTTCACTAACTATAAGCACA 1255
Query 1253 TGTTGGAAACCAGTACAACATACACTGGTAACTACTTCGATGCATTCATCAAGGATCTGG 1312
|||||||| ||||||||||| |||||||||| ||||||||| |||||||||||| ||||
Sbjct 1256 AGTTGGAAATCAGTACAACATGCACTGGTAACCACTTCGATGGATTCATCAAGGAACTGG 1315
Query 1313 AAGATGGTAAGCCGCCTGAAGTGAAGGCTGATGCATATGAGGATGGACAAAGCAGTCACT 1372
||||||||||||| ||||||||||||||||| || ||| ||| || | |||||| ||
Sbjct 1316 AAGATGGTAAGCC---TGAAGTGAAGGCTGATGGTTACGAGAATGAACCAGGCAGTCGCT 1372
Query 1373 GGTTCTGCGATAGGTGCACGTTTGAGAACAGCTGTGATGATAAACAGTGCAAGATGTGCT 1432
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1373 GGTTCTGTGATAGGTGCACGTTTGAGAACAGCTGGGTTGATAAACAGTGCAAGATGTGCT 1432
Query 1433 TTTACTCTCTGGGCT--C-TCCT-CA--T---GTGGCAGCAGCTCCTGAAGACCTTGGAA 1483
||| | | |||| || | |||| | | ||||||||||||||||||||||||||||
Sbjct 1433 TTTTCCCCCTGGACTATCATCCTTCTCCTCAAGTGGCAGCAGCTCCTGAAGACCTTGGAA 1492
Query 1484 AATTGGAGTG 1493
||| ||||||
Sbjct 1493 AATCGGAGTG 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73644199515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5