BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487719
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 2052 0.0
> AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2852106-2854513 FORWARD LENGTH=1416
Length=1416
Score = 2052 bits (1111), Expect = 0.0
Identities = 1269/1342 (95%), Gaps = 24/1342 (2%)
Strand=Plus/Plus
Query 1 GATTCTCGCTTCTTACTACATGTGTATCAATCGATCTCTACCCAGATTCTCCGGAGGAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 GATTCTCGCTTCTTACTACATGTGTATCAATCGATCTCTACCCAGATTCTCCGGAGGAGC 91
Query 61 TTTGCGTCTTCTCGTATAGATGCAGTGAAGGTCCTTTGTTAGATGGGAAAACTTTTTCTG 120
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 92 TTTGAGTCTTGTCGTATAGATGCAGTGAAGGTCCTTTGTTAGATGGGAAAACTTGTTCTT 151
Query 121 GAGTTGTCAAAAGAGAATCAGTTGGAGACTACCAATTGCGGAGTCAGTGATCACGGTTCT 180
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 152 GAGTTGTCAAAAGAGAATCAGTTGGAGACTACCGATTGTGGAGTCAGTGATCACGGTTCT 211
Query 181 CCACCTATCAAGAACGAAGAACATGAGGCACCACGTTACAGTTCAGACAAAGACACGGGT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CCACCTATCAAGAATGAAGAACATGAGGCACCACGTTACAGTTCAGACAAAGACACGGGT 271
Query 241 TTACCAACTTGCCGTGTGTGCCAGTGTGCAGAATCCGATAGAAGAGGAGATGCTGCTTTA 300
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 272 TTACCAACTTGCCGTGTATGCCAGTGTGCAGAATCTGATAGAAGAGGAGATGCTGCTTTA 331
Query 301 GGGTTTTTGGGGATTACTCCTCCGGTTTCAGAACCTCGCAGAAGCAATGCGGGCGAAGAA 360
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 332 GGGTTTTTGGGAATTACTCCTCCGGTTTCAGAACCTCGTAGAAGCAATGCGGGTGAAGAA 391
Query 361 ACCGTTGATCAGAAAAGCTCGGTTAACAAATCTAGTGGATTCATCGAACTAATAAGTCCT 420
||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 392 ACCGTTGATCAGAGAAGCTCGGTTGTCAAATCTAGCGGATTCATCGAACTGATAAGTCCT 451
Query 421 GATGGAGAGGTTTTCGTTTGTGCAAATGGCGATATAGAAATGGGAGCGTGGCAACATCGA 480
|||||||| ||||| ||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 452 GATGGAGAAGTTTTTGTTTGTGCAAACGACGATATAGAAATGGGAGCGTGGCAGCATCGA 511
Query 481 GATAAGTTGCTAGAACTCGGATGTTCTTGCAAGAATGATCTTGCTTTGGTACACTACGCT 540
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 512 GATAAGTTGCTAGAACTTGGATGTTCTTGCAAGAATGATCTCGCTTTGGTACACTATGCT 571
Query 541 TGTGCATTGAAATGGTTCGTCAACCACGGATCAACAGTTTGTGAGATATGTGGAAAAACC 600
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 572 TGTGCATTGAAATGGTTTGTCAACCACGGATCAACTGTTTGTGAGATATGCGGAAAAACC 631
Query 601 GCGGAGAATATAAGAACAGTTGATTTCAACAAAGTGGTTATCGCTTTAAAAGATTACGCA 660
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 632 ACGGAGAATATAAGAACAGTTGATTTCAACAAAGTGGTTATCGCCTTAAAAGATTACGCA 691
Query 661 GCGCTAAGAGAAAGAACAGCGGATGGAGATCCAAATCCTGTCGCGGTTAACAACAACACG 720
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 692 GCGCTAAGAGAAAGAACAGCGGATGGAGATCCAAATCCTGTAGTGGTTAACAACAACACC 751
Query 721 AGTTCTTCAGGAATTGATCCTGATGCAGTTGCAGCCATTCGAAGGCAACGACTTAGTGAG 780
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 AGTTCGTCAGGGATTGATCCTGATGCAGTTGCAGCCATTCGAAGGCAACGACTTAGTGAG 811
Query 781 ATTTCGTTATGGTTTGGTCCACATTGTTC-A--AACAACAACAATAGTAGTAATTCCGGT 837
|| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
Sbjct 812 ATATCGTTATGGTTTGGTCCTCATTGTTCAACCAACAACAACAATAGTAGTAATTCCGCT 871
Query 838 GCTGCAGGGACGGCTTCTTCTCAGGTTACATCTGAACAACCTGTGGGTATAGTAAACTTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GCTGCAGGGACGGCTTCTTCTCAGGTTACATCTGAACAACCTGTGGGTATAGTAAACTTT 931
Query 898 GATATCTTGCCTATGGAAAGCCGTGCGACCAAATGGGCGGTTGAAGGTACCGGAATACTA 957
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 932 GATATCTTGCCTATGGAAAGCCGTGCGACTAAATGGGCGGTGGAAGGTACCGGAATACTA 991
Query 958 CTTGCAACCGGATTACTCACTGTTACTTTGGCATGGCTCATTGCTCCTCGTGTCGGAAAG 1017
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 992 CTTGCAACCGGATTACTCACAGTTACTTTGGCTTGGCTCATTGCTCCTCGTGTCGGAAAG 1051
Query 1018 AGAACTGCAAAGAGTGGACTACACATACTTCTAGGTGGTCTCTGTGCTTTAACAGTAGTC 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 AGAACTGCAAAGAGTGGTCTACACATACTTCTAGGTGGTCTCTGTGCTTTAACAGTAGTC 1111
Query 1078 ATCTTCTTCAGATTCGTTGTGCTGACAAGAATCAGGTACGGACCAGCACGTTACTGGGCA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 ATCTTCTTCAGATTCGTTGTGCTGACAAGAATCAGGTACGGACCAGCACGTTACTGGGCA 1171
Query 1138 ATCTTGTTCGTCTTCTGGTTTCTTGTGTTTGGCATTTGGGCTTCACGTTCACACGCTTCT 1197
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ATATTGTTCGTCTTCTGGTTTCTTGTGTTTGGCATTTGGGCTTCACGTTCACACGCTTCT 1231
Query 1198 CACTCCTCCACATGATAAATTCTTCATCATCCtt------------t-t--t-tt---GG 1238
||||||||||||||||||||||| |||||||||| | | | || ||
Sbjct 1232 CACTCCTCCACATGATAAATTCTCCATCATCCTTCAAGACACAAAATGTACTCTTTTTGG 1291
Query 1239 TCTCTGTCAATATCGTTTACGTTATTCTCTTTCAAAACACAAAATGTACAATTAATTACT 1298
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1292 TCTCTGTCAATATCATGTACGTTATTCTCTTTCAAGACACAAAATGTACAATTAATTACT 1351
Query 1299 CTTGTCAGaaaa-aaaaaaaGG 1319
||| ||| |||| |||||||||
Sbjct 1352 CTTATCA-AAAAGAAAAAAAGG 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5