BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487721
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08780.1 | Symbols: | winged-helix DNA-binding transcriptio... 2396 0.0
AT5G08790.1 | Symbols: ATAF2, anac081 | NAC (No Apical Meristem... 270 3e-71
> AT5G08780.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr5:2856740-2859006 FORWARD LENGTH=1612
Length=1612
Score = 2396 bits (1297), Expect = 0.0
Identities = 1492/1585 (94%), Gaps = 17/1585 (1%)
Strand=Plus/Plus
Query 30 CAATGGCGGCTTCTGCTATATTAATGTCTATGGCACACGAAAGAAAAGTTGAGAATCTGA 89
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 41 CAATGGCGGCTTCTGCTACATTAATGTCTATGGCACATGAAAGAAAAGTTGAGAATCTGA 100
Query 90 GAGGTTTTATGGTGAATTTGGCGAAATCAAGAGGCTTTTCCCTTCCTGAGACTAAACGT- 148
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 101 GAGGTTTTATGGTGAATTTGGCGAATTCAAGAGACTTTTCCCTTCCTGAGACTAAAC-TC 159
Query 149 TTCCAACAGAAATTCTTGGATCTGTGTTTATCCCGTACTCCTGATCATCCCACTTATTCC 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TTCCAACAGAAATTCTTGGATCTGTGTTTATCCCGTACTCCTGATCATCCCACTTATTCC 219
Query 209 GCTATGATATTTATTGCTATTATGGATTTGAATGAAGAAGGTGGCGCAAGTGAAGATGTT 268
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
Sbjct 220 GCTATGATATTTATTGCTATCATGGATTTGAATAAAGAAGGTGGCGCAAGTGAAGATGCT 279
Query 269 ATATCTGAGTTTATAAAGTCCAAGTACAAGAACTTGCCATTTGCTCACAAGAGTTTGCTC 328
|||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||
Sbjct 280 ATATCTGAGTTTATAAAGTCGAAATACAAGAACTTGCCATTTGCTCACACGAATTTGCTT 339
Query 329 AGTCATCATTTAGCTAAGCTTGTGGAGAAAAGAGAGATACTTTGTGACTGCAACAGCTAC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 340 AGTCATCATTTAGCTAAGCTTGTGGAGAAAAGAGAGATACTTTGTGACTGCAACAACGAC 399
Query 389 TGTTACTCTCTCCCGGGTGAGAAGAAGACTGTTGCTTCCACTGATGATGAGAGAAAGAGC 448
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 400 TGTTACTCTCTCCCGGGTGAGAAGAAGACTGTTGCTTCCACTGATGTTCAGAGAAAGAGC 459
Query 449 GCTGTGATAACAGTGAGAAAAAATGATAAGCGTGTGGCGAATGAGGTTATGACTTGCCAA 508
| | ||||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||
Sbjct 460 GATCTGATAACAGTGAGAACAAATGATCAGCGTGCGGCGGATGAGGTTATGACTTGCCAA 519
Query 509 AACGAGGAAGAAAGTGTTGAAATTTTGAAGTCTGGGGATCGTAAGGTTGATTTGTTGGAA 568
||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 520 AACAAGGAAGAAAGTGTTGAAATTTTGAAGTCTGGGGATCCTAAGGTTGTTTTGTTGGAA 579
Query 569 GAACAGAGTTTGACTAAATCCCGAACTGGCTCCAAACGTAAAGCATGTTGTGCCATTAAA 628
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 580 GAACAGAGTTTGACTAAATCCCGAACCGGCTCCAAACGTAAAGCATGTTGTGTCATTAAC 639
Query 629 GTCATTGAAGTAA-GGCACACAGAAGATAATGGAGTCAAAGCAGATTTAAGGGATTCGAC 687
||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 640 GTCATTGAAGTAATGG-ACACAGAAGATAATGGATTCAAAGCAGGTTTAAGGGATTCGAC 698
Query 688 TATTCAAACTCCTAGGAAAGAGGGAGTTGCTGAAGAACCAGGAGTGGCTGTTGAAAATAG 747
| |||||| |||||||||||||||||||| | | | || ||| | ||| ||||||||
Sbjct 699 TGTTCAAATTCCTAGGAAAGAGGGAGTTG-T--TG-A--AGTAGTAGATGTAGAAAATAG 752
Query 748 TGAGACTGAAGCTAGGACTGAAGCAAACAGTAGAGGAGGTGAATTATATGAAGTAGCTGT 807
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 753 TGAGAATGAAGCTAGGATTGAAGCAAACAGTAGAGGAGGTGAATTATATGAAGTGGCTGT 812
Query 808 TCTATATAAGCAAAATGATGTGTTGACGGATGAGTCGGGTAAAGAAGCAATGGAAACAAG 867
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 813 TCTATATAAGCAGAATGATGTGTTGATGGAAGAGTCGGGTAAAGAAGCAATGGAAACAAG 872
Query 868 CTCAAAAGAGAGAAAAGCAAAACTGCGCAGAACATCTAACACGACGAAAGAAGCATGTGT 927
||||| || ||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 873 CTCAATAGTGAGAAAAGCAAAACTGCGCAGAACATCTAACACAACGAAAGAA--A-ATGT 929
Query 928 GGAAGTGACGAGTGAAGCATATAAAAAACTTTGGGAGTGCCAAACCGAAGCATGCAGCAA 987
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GGAAGTCACGAGTGAAGCATATAAAAAACTTTGGGAGTGCCAAACCGAAGCATGCAGCAA 989
Query 988 TATCATTGCTCTAGAGAAAATGCTAAAACAGTGGAAAGAGAAAGACCAGCAGAACAAAGC 1047
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 990 TATCATTGCTCTAGAGAAAATGCTAAAACAGTGCAAAGAGAAAGACCAGCAGAACAAAGC 1049
Query 1048 TGTTTCAGAAATTGATGATGTTTCTCGTTTGCCTTTATCAATGGAAAGCTGCAGAGAACT 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TGTTTCAGAAATTGATGATGTTTCTCGTTTGCCTTTATCAATGGAAAGCTGCAGAGAACT 1109
Query 1108 GTGGAAGGCTGCCCAAAAGATACAAAACCAGCTCTCTGAGATCATTGATTCCTGTGATGA 1167
||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1110 GTGGAAGGCTGCCCAAAAGTTACAAAGCCAGCTCTCTGAGATCATCGATTCATGTGATGA 1169
Query 1168 AACCGTGGTTCCATATTCTGAATCTCCAGGATGTGAAATCGAAGGTCTTAGCAAAGGATT 1227
|||||||||||||||||||| |||||||||||||||| |||||||| | |||||||||||
Sbjct 1170 AACCGTGGTTCCATATTCTGTATCTCCAGGATGTGAACTCGAAGGTATAAGCAAAGGATT 1229
Query 1228 ATGCAAAGAGGATCCCAAAATGAAAACTCCTTGTGGGAATAGTGGATCTGAAAAACCCTC 1287
|||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1230 ATGCAAAGAGGATCCCAAAATGAAGACTCCTCGTGGGAATAATGGATCTGAAAAACCCTC 1289
Query 1288 CAAACAGATTGAACAGAAGGAAAGACAGAAGTGTTCTCAAAA-GAAACCACAGGTCAAGA 1346
|| |||| ||||||||||||||||| |||||| ||| ||||| |||||| ||||||||||
Sbjct 1290 CACACAGCTTGAACAGAAGGAAAGAGAGAAGTCTTC-CAAAAAGAAACCTCAGGTCAAGA 1348
Query 1347 AAACGAGAATCAAAAGACTCCGAGACATAGGAACAACAGCTGTGAGGAAATCGCCTCGAT 1406
|||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1349 AAACGAGAATCAAAAGTCTCAGAGACATAGGAATAACAGCTGTGAGGAAATCGCCTCGAT 1408
Query 1407 TCAGCTGATGAAACTCAT-AAAAATATGCTTCTGAAGAGCATGATATTTTATAAAGGTTA 1465
||||||||||| |||||| ||||| ||||||| | |||||||||||| | ||||||||||
Sbjct 1409 TCAGCTGATGATACTCATCAAAAA-ATGCTTCCGGAGAGCATGATATCTCATAAAGGTTA 1467
Query 1466 GGTTGTTATTTAATATCAGTATCTACATAAGTGCAACATCTTGAAGAATTTGAATATAAA 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 GGTTGTTATTTAATATCAGTATCTACATAAGTGCAACATCTTGAAGAATTTGAATATAAA 1527
Query 1526 TTTTTAGTTTTCATATAAATTTCTCATGAAAGAACAAGAATGTGCCTGCTAATGAGGCAT 1585
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1528 TTTTTAGTTTTCATATAAACTTCTCATGAAAGAACAAGAATGTGCCTGCTAATGAGACAT 1587
Query 1586 TGATGCTAAAACCTATTAACATTCT 1610
||||||||||| |||||||||||||
Sbjct 1588 TGATGCTAAAAGCTATTAACATTCT 1612
> AT5G08790.1 | Symbols: ATAF2, anac081 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr5:2858849-2860262
REVERSE LENGTH=1234
Length=1234
Score = 270 bits (146), Expect = 3e-71
Identities = 152/155 (98%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 1456 ATAAAGGTTAGGTTGTTATTTAATATCAGTATCTACATAAGTGCAACATCTTGAAGAATT 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 ATAAAGGTTAGGTTGTTATTTAATATCAGTATCTACATAAGTGCAACATCTTGAAGAATT 1172
Query 1516 TGAATATAAATTTTTAGTTTTCATATAAATTTCTCATGAAAGAACAAGAATGTGCCTGCT 1575
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1171 TGAATATAAATTTTTAGTTTTCATATAAACTTCTCATGAAAGAACAAGAATGTGCCTGCT 1112
Query 1576 AATGAGGCATTGATGCTAAAACCTATTAACATTCT 1610
|||||| |||||||||||||| |||||||||||||
Sbjct 1111 AATGAGACATTGATGCTAAAAGCTATTAACATTCT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5