BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487723
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09220.1 | Symbols: AAP2 | amino acid permease 2 | chr5:2866... 2724 0.0
AT5G63850.1 | Symbols: AAP4 | amino acid permease 4 | chr5:2555... 1286 0.0
> AT5G09220.1 | Symbols: AAP2 | amino acid permease 2 | chr5:2866252-2869054
FORWARD LENGTH=1794
Length=1794
Score = 2724 bits (1475), Expect = 0.0
Identities = 1653/1737 (95%), Gaps = 19/1737 (1%)
Strand=Plus/Plus
Query 1 AAAATGCAGCAGCAAATACTATCATCACCCATCTCCTTAGTTCTA-TTT-T-GCTCTTCT 57
||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 1 AAAATGCAGCAGCAAATACTATCATCACCCATCTCCTTAGTTCTATTTTATAATTCCTCT 60
Query 58 TCTTTTTGTTCATAGCTTTGTAA-TAGTAGTCTTATTTCTC-TTAAGGCTCAATAAGAGG 115
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 61 TCTTTTTGTTCATAGCTTTGTAATTA-TAGTCTTATTTCTCTTTAAGGCTCAATAAGAGG 119
Query 116 AGATGGGTGAAACCGCTGCCGCCAATAACCACCGTCACCACCACCATCACGGCCACCAAG 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGATGGGTGAAACCGCTGCCGCCAATAACCACCGTCACCACCACCATCACGGCCACCAGG 179
Query 176 TCTTTGACGTGGCCAGCCACGATGTCGTCCCTCCACAACCAGCTTTTAAATGCTTCGACG 235
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 180 TCTTTGACGTGGCCAGCCACGATTTCGTCCCTCCACAACCGGCTTTTAAATGCTTCGATG 239
Query 236 ATGATGGCCGCCTCAAAAGAACCGGGACCGTTTGGACCGCGAGCGCTCATATAATAACTG 295
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 240 ATGATGGCCGCCTCAAAAGAACTGGGACTGTTTGGACCGCGAGCGCTCATATAATAACTG 299
Query 296 CAGTGATCGGATCCGGCGTTTTGTCATTGGCGTGGGCAATTGCACAGCTCGGATGGATCG 355
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 CGGTTATCGGATCCGGCGTTTTGTCATTGGCGTGGGCGATTGCACAGCTCGGATGGATCG 359
Query 356 CTGGCCCTGCGGTGATGCTATTGTTCTCTTTTGTTACTCTTTACTCCTCCACACTTCTTA 415
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 CTGGCCCTGCTGTGATGCTATTGTTCTCTCTTGTTACTCTTTACTCCTCCACACTTCTTA 419
Query 416 GCGATTGCTACAGAACCGGCGATGCAGTGTCTGGCAAGAGAAACTACACTTACATGGATG 475
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCGACTGCTACAGAACCGGCGATGCAGTGTCTGGCAAGAGAAACTACACTTACATGGATG 479
Query 476 CCGTTCGATCAATTCTCGGTGGGTTCAAGTTCAAGATTTGTGGGCTAATTCAATACTTGA 535
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 480 CCGTTCGATCAATTCTCGGTGGGTTCAAGTTCAAGATTTGTGGGTTGATTCAATACTTGA 539
Query 536 ATCTCTTTGGTATCGCGATCGGATACACAATCGCAGCATCTATAAGCATGATGGCGATCA 595
|||||||||||||||| || |||||||| || ||||| || |||||||||||||||||||
Sbjct 540 ATCTCTTTGGTATCGCAATTGGATACACGATAGCAGCTTCCATAAGCATGATGGCGATCA 599
Query 596 AGAGATCGAACTGCTTCCACAAGAGTGGAGGAAAAGACCCATGTCACATGTCGAGCAATC 655
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 600 AGAGATCCAACTGCTTCCACAAGAGTGGAGGAAAAGACCCATGTCACATGTCCAGTAATC 659
Query 656 CTTACATGATCGCATTTGGTGTGGCAGAGATCTTGCTCTCTCAGGTTCCTGATTTCGATC 715
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTTACATGATCGTATTTGGTGTGGCAGAGATCTTGCTCTCTCAGGTTCCTGATTTCGATC 719
Query 716 AGATTTGGTGGATCTCTATTGTTGCAGCTGTAATGTCTTTCACTTACTCTGCCATTGGTC 775
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 720 AGATTTGGTGGATCTCCATTGTTGCAGCTGTTATGTCCTTCACTTACTCTGCCATTGGTC 779
Query 776 TAGCTCTTGGAATCGTTCAAGTTGCAGCAAATGGAGTTTTCAAAGGAAGTCTCACTGGAA 835
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 TAGCTCTTGGAATCGTTCAAGTTGCAGCGAATGGAGTTTTCAAAGGAAGTCTCACTGGAA 839
Query 836 TAAGCATCGGAACAGTGACTCAAACACAAAAAATATGGAGAACCTTCCAAGCACTTGGAG 895
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 840 TAAGCATCGGAACAGTGACTCAAACACAGAAGATATGGAGAACCTTCCAAGCACTTGGAG 899
Query 896 ACATTGCCTTTGCTTACTCATACTCTGTTGTCCTAATCGAAATTCAGGATACTGTAAGAT 955
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 900 ACATTGCCTTTGCGTACTCATACTCTGTTGTCCTAATCGAGATTCAGGATACTGTAAGAT 959
Query 956 CCCCACCAGCGGAATCGAAAACGATGAAGAAAGCCACAAAAATCAGCATTGCTGTCACGA 1015
||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 960 CCCCACCGGCGGAATCGAAAACGATGAAGAAAGCAACAAAAATCAGTATTGCCGTCACAA 1019
Query 1016 CTATCTTCTACATGCTATGTGGCTCAATGGGTTATGCCGCTTTTGGAGATGCAGCACCGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTATCTTCTACATGCTATGTGGCTCAATGGGTTATGCCGCTTTTGGAGATGCAGCACCGG 1079
Query 1076 GAAACCTCCTCACGGGTTTTGGATTCTACAACCCGTTTTGGCTCCTTGACATAGCCAACG 1135
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 GAAACCTCCTCACCGGTTTTGGATTCTACAACCCGTTTTGGCTCCTTGACATAGCTAACG 1139
Query 1136 CCGCCATTGTCGTCCACCTCATCGGAGCTTACCAAGTCTTTGCTCAACCCATCTTCGCCT 1195
|||||||||| ||||||||| | ||||||||||||||||||||||| |||||||| ||||
Sbjct 1140 CCGCCATTGTTGTCCACCTCGTTGGAGCTTACCAAGTCTTTGCTCAGCCCATCTTTGCCT 1199
Query 1196 TTATTGAAAAATCAGTCGCAGAGAGATATCCAGACAATGACTTCCTCAGCAAGGAATTTG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTATTGAAAAATCAGTCGCAGAGAGATATCCAGACAATGACTTCCTCAGCAAGGAATTTG 1259
Query 1256 AAATCAAAATCCCCGGATTTAAGTCTCCATACAAAGCAAACGTTTTCAGGGTAGTTTACC 1315
|||||| ||||||||||||||||||||| ||||||| ||||||||||||| | ||||||
Sbjct 1260 AAATCAGAATCCCCGGATTTAAGTCTCCTTACAAAGTAAACGTTTTCAGGATGGTTTACA 1319
Query 1316 GGAGTGGCTTTGTCGTTACAACCACTGTGATATCAATGCTGATGCCGTTTTTCAACGATG 1375
||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 1320 GGAGTGGCTTTGTCGTTACAACCACCGTGATATCGATGCTGATGCCGTTTTTTAACGACG 1379
Query 1376 TGGTCGGGATCTTAGGGGCGTTAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGTCGGGATCTTAGGGGCGTTAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGA 1439
Query 1436 TGTATATTAAGCAGAGGAAAGTTAAGAAATGGAGCACGAGATGGGTGTGTTTACAGATGC 1495
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGTATATTAAGCAGAGGAAGGTTGAGAAATGGAGCACGAGATGGGTGTGTTTACAGATGC 1499
Query 1496 TTAGTGTTGCTTGTCTTGTGATCTCGGTGGTCGCCGGAGTTGGATCAATCGCCGGAGTGA 1555
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1500 TTAGTGTTGCTTGTCTTGTGATCTCGGTGGTCGCCGGGGTTGGATCAATCGCCGGAGTGA 1559
Query 1556 TGCTTGATCTTAAGGTCTACAAGCCATTCAAGTCTACATATTGATGATTATGGACCATGA 1615
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGCTTGATCTTAAGGTCTATAAGCCATTCAAGTCTACATATTGATGATTATGGACCATGA 1619
Query 1616 TGAACAACAGA-A-AGTTGGTGTGTAAAGTTTAGCATTTCAAAGaaaa----aaaa-TGT 1668
| ||||||| | ||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1620 --A-CAACAGAGAGAGTTGGTGTGTAAAGTTTACCATTTCAAAGAAAACTCCAAAAATGT 1676
Query 1669 GTATATTGTATGTT-TTC--ATTTCGTATGGTTTCATCTTTGTAATAAGATTTTAAA 1722
|||||||||||||| ||| |||||||||||| ||||||||||||||| |||| |||
Sbjct 1677 GTATATTGTATGTTGTTCTCATTTCGTATGGTCTCATCTTTGTAATAAAATTTAAAA 1733
> AT5G63850.1 | Symbols: AAP4 | amino acid permease 4 | chr5:25551055-25553520
FORWARD LENGTH=1847
Length=1847
Score = 1286 bits (696), Expect = 0.0
Identities = 1171/1401 (84%), Gaps = 30/1401 (2%)
Strand=Plus/Plus
Query 207 TCCACAACCAGCTTTTAAATGCTTCGACGATGATGGCCGCCTCAAAAGAACCGGGACCGT 266
||||| |||||||| ||||| || || || |||||||| || ||| | | ||||| ||
Sbjct 309 TCCACGGCCAGCTTTCAAATGTTTTGATGACGATGGCCGGCTTAAACGTTCAGGGACGGT 368
Query 267 TTGGACCGCGAGCGCTCATATAATAACTGCAGTGATCGGATCCGGCGTTTTGTC-ATTGG 325
|||||||||||| || ||||| ||||| || ||||| ||||| || ||| | || || |
Sbjct 369 TTGGACCGCGAGTGCGCATATCATAACCGCCGTGATTGGATCTGGTGTTCTATCGCTT-G 427
Query 326 CGTGGGCAATTGCACAGCTCGGATGGATCGCTGGCCCTGCGGTGATGCTATTGTTCTCTT 385
||||||| || | || ||||| |||||||| || ||| | |||||| | ||||||||||
Sbjct 428 CGTGGGCTATAGGTCAACTCGGTTGGATCGCAGGTCCTACAGTGATGTTGTTGTTCTCTT 487
Query 386 TTGTTACTCT-TTACTCCTCCACACTTCTTAGCGATTGCTACAGAACCGGCGATGCAGTG 444
|||| ||| | ||||| ||||| ||||||||||| |||||||||||||| ||| | ||
Sbjct 488 TTGTCACT-TACTACTCTTCCACGCTTCTTAGCGACTGCTACAGAACCGGAGATCCTGTC 546
Query 445 TCTGGCAAGAGAAACTACACTTACATGGATGCCGTTCGATCAATTCTCGGTGGGTTCAAG 504
||||| ||||||||||| ||||||||||| || || |||||||| || ||||| || | |
Sbjct 547 TCTGGGAAGAGAAACTATACTTACATGGACGCTGTCCGATCAATCCTAGGTGGCTTTAGG 606
Query 505 TTCAAGATTTGTGGGCTAATTCAATACTTGAATCTCTTTGGTATCGCGATCGGATACACA 564
||||||||||||||||| ||||| || |||||||| ||||||||| || |||| ||||||
Sbjct 607 TTCAAGATTTGTGGGCTGATTCAGTATTTGAATCTGTTTGGTATCACGGTCGGGTACACA 666
Query 565 ATCGCAGCATCTATAAGCATGATGGCGATCAAGAGATCGAACTGCTTCCACAAGAGTGGA 624
||||||||||||||||| ||||||||||||||||| || ||||| |||||| |||| |||
Sbjct 667 ATCGCAGCATCTATAAGTATGATGGCGATCAAGAGGTCCAACTGTTTCCACGAGAGCGGA 726
Query 625 GG-AAAAGACCCATGTCACATGTCGAGCAATCCTTACATGATCGCATTTGGTGTGGCAGA 683
|| |||| |||| |||||||||||||||||||| ||||||||| ||||||||| | ||
Sbjct 727 GGGAAAA-ACCCGTGTCACATGTCGAGCAATCCATACATGATCATGTTTGGTGTGACCGA 785
Query 684 GATCTTGCTCTCTCAGGTTCCT-GATTTCGATCAGATTTGGTGGATCTCTATTGTTGCAG 742
|||||||||||||||| | | ||||| || |||||||||||| |||| ||||| || |
Sbjct 786 GATCTTGCTCTCTCAGAT-CAAAGATTTTGACCAGATTTGGTGGCTCTCCATTGTCGCTG 844
Query 743 CTGTAATGTCTTTCACTTACTCTGCCATTGGTCTAGCTCTTGGAATCGTTCAAGTTGCAG 802
|| | ||||| ||||| |||||||| || ||| ||||||| |||||| ||||||| || |
Sbjct 845 CTATCATGTCCTTCACATACTCTGCAATCGGTTTAGCTCTCGGAATCATTCAAGTCGCGG 904
Query 803 CAAATGGAGTTTTCAAAGGAAGTCTCACTGGAATAAGCATCGGAACAGTGACTCAAACAC 862
||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||| || |
Sbjct 905 CAAATGGAGTTGTCAAGGGAAGTCTCACCGGAATTAGCATCGGCGCAGTGACTCAGACCC 964
Query 863 AAAAAATATGGAGAACCTTCCAAGCACTTGGAGACATTGCCTTTGCTTACTCATACTCTG 922
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 965 AAAAAATATGGAGAACCTTTCAAGCACTTGGAGACATTGCCTTTGCTTATTCATACTCTG 1024
Query 923 TTGTCCTAATCGAAATTCAGGATACTGTAAGATCCCCACCAGCGGAATCGAAAACGATGA 982
|||| || || ||||||||||| ||||||||||| |||||||| ||||| ||||||||||
Sbjct 1025 TTGTTCTTATTGAAATTCAGGACACTGTAAGATCTCCACCAGCAGAATCAAAAACGATGA 1084
Query 983 AGAAAGCCACAAAAATCAGCATTGCTGT--CA-CGACTATCTTCTACATGCTATGTGGCT 1039
||| ||||||| ||||||||| ||||| || |||| || || |||||||||||||| |
Sbjct 1085 AGATCGCCACAAGAATCAGCATCGCTGTTACAACGAC-AT-TT-TACATGCTATGTGGTT 1141
Query 1040 CAATGGGTTATGCCGCTTTTGGAGATGCAGCACCGGGAAACCTCCTCACGGGTTTTGGAT 1099
||||| |||||||| || |||||| |||||||||||||||| | || |||||||| |
Sbjct 1142 GTATGGGCTATGCCGCCTTCGGAGATAAAGCACCGGGAAACCTCTTAACCGGTTTTGGTT 1201
Query 1100 TCTACAACCCGTTTTGGCTCCTTGACATAGCCAACGCCGCCATTGTCGTCCACCTCATCG 1159
||||||| |||||||||||||||||| | || ||||| ||||| || ||||||| | |
Sbjct 1202 TCTACAATCCGTTTTGGCTCCTTGACGTGGCTAACGCTGCCATAGTTATCCACCTTGTAG 1261
Query 1160 GAGCTTACCAAGTCTTTGCTCAACCCATCTTCGCCTTTATTGAAAAATCA-G-TCGCAGA 1217
||||||| |||||||||||||| |||||||||||||||||||| ||| || | | || |
Sbjct 1262 GAGCTTATCAAGTCTTTGCTCAGCCCATCTTCGCCTTTATTGAGAAA-CAAGCT-GCCGC 1319
Query 1218 GAGATATCCAGACAATGACTTCCTCAGCAAGGAATTTGAAATCAAAATCCCCGGATTTAA 1277
|| | ||| |||| |||||| | | |||||||| |||||| |||||| || ||||
Sbjct 1320 TAGGTTTCCCGACAGTGACTTGGTGACCAAGGAATACGAAATCCGAATCCCTGGTTTTAG 1379
Query 1278 GTCTCCATACAAAG-CAAACGTTTTCAGGGTAGTTTACCGGAGTGGCTTTGTCGTTACAA 1336
||| || ||||||| ||| ||||||||| | ||||||||| || || ||||| ||| |
Sbjct 1380 GTCACCGTACAAAGTCAA-CGTTTTCAGAGCAGTTTACCGAAGCGGGTTTGTGGTTTTGA 1438
Query 1337 CCACTGTGATATCAATGCTGATGCCGTTTTTCAACGATGTGGTCGGGATCTTAGGGGCGT 1396
||||||||||||| ||||| ||||||||||||||||| || || ||||| ||||| ||||
Sbjct 1439 CCACTGTGATATCCATGCTTATGCCGTTTTTCAACGACGTCGTAGGGATTTTAGGTGCGT 1498
Query 1397 TAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGATGTATATTAAG-CAGAGGAAA 1455
||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1499 TAGGGTTTTGGCCTTTGACGGTTTACTTTCCGGTGGAGATGTATAT-AAGACAGAGGAAG 1557
Query 1456 GTTAAGAAATGGAGCACGA-GATGGGTGTGTTTACAGATGCTT-AG-TGTTGCTTGTCTT 1512
||| ||| |||||| | || | ||||| ||| | |||||| || || ||| | |||| ||
Sbjct 1558 GTTGAGAGATGGAGTATGAAG-TGGGTTTGTCTGCAGATG-TTGAGCTGTGG-TTGT-TT 1613
Query 1513 G-TGATCTCGGTGGTCGCCGGAGTTGGATCAATCGCCGGAGTGATGCTTGATCTTAAGGT 1571
| ||||| || |||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 1614 GATGATCACGTTGGTCGCCGGAGTTGGCTCCATCGCCGGAGTAATGCTAGACCTTAAGGT 1673
Query 1572 CTACAAGCCATTCAAGTCTAC 1592
|||||||| |||||| ||||
Sbjct 1674 TTACAAGCCGTTCAAGACTAC 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5