BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487733
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09240.2 | Symbols: | ssDNA-binding transcriptional regulat... 518 3e-146
> AT5G09240.2 | Symbols: | ssDNA-binding transcriptional regulator
| chr5:2873660-2874849 REVERSE LENGTH=719
Length=719
Score = 518 bits (280), Expect = 3e-146
Identities = 320/339 (94%), Gaps = 4/339 (1%)
Strand=Plus/Plus
Query 1 TTATTTTCCTTGAGAATCTCAAGAATCGATTTTTGCAGTAGAAGAGTGCTTTTCTTTTAC 60
|||||| |||||||||||||||| || |||||||||||||||||||| |||| |||||
Sbjct 1 TTATTTAACTTGAGAATCTCAAGAGTCAATTTTTGCAGTAGAAGAGTG-TTTT-TTTTAG 58
Query 61 TGGTTGAGAAAATGTCTTCGAGTGGAAAAAGGAAAGGCGAGGAAGTCAGAGCATCAGAC- 119
|||| ||||||||||| || ||||||||||||| |||||| |||||||||||||||
Sbjct 59 AGGTTAAGAAAATGTCTGAGAACGGAAAAAGGAAAGACGAGGATGTCAGAGCATCAGACG 118
Query 120 AACGACGACGAATCTGAGACCCACGCGCCGCCTAAGAAAGTGGCAAAGCCAGCGGACGAG 179
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACCG-CGACGAATCTGAGACCCACGCGCCGCCTAAGAAAGTGGCAAAGCCAGCGGACGAG 177
Query 180 ATTGAGGACATCTTCATCTGCAATTTAGATAAGAATCGGAGAGTCTTTGTGAGGAATTGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATTGAGGACATCTTCATCTGCAATTTAGATAAGAATCGGAGAGTCTTTGTGAGGAATTGC 237
Query 240 AATGGGAGGATTTGGATTGCCATTCGTCAGTTCTTTGTCAAGGACGGTATAACTTTACCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AATGGGAGGATTTGGATTGCCATTCGTCAGTTCTTTGTCAAGGACGGTATAACTTTACCT 297
Query 300 TGTAATAGCAAGCACGGTATCTCTCTAAGCCTGGAACAG 338
|||||||||||||| ||||||||||||||||||||||||
Sbjct 298 TGTAATAGCAAGCAAGGTATCTCTCTAAGCCTGGAACAG 336
Score = 316 bits (171), Expect = 1e-85
Identities = 230/256 (90%), Gaps = 14/256 (5%)
Strand=Plus/Plus
Query 336 CAGTGGAACGATCTTCGGAACCATGAGGAGGATATCGATAAGGCCCTCTCTGACCTTTCT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 CAGTGGAACGATCTTCGGAACCATGAGGAGGATATCGATAAGGCCCTCTCTGAGCTTTCT 477
Query 396 GAGGTTTAAAAGCTTGTATAATCGGGTAGTAAGTCTAATGGAAGATATGGCTTAGGTTGT 455
||||||||||||||||| ||||| || || | | |||||| |||||| ||||||
Sbjct 478 GAGGTTTAAAAGCTTGTGTAATC-GG--GT-A---T--TGGAAG--GTGGCTTTGGTTGT 526
Query 456 TTTGGTTTGTTTTTCAGAACAACACCATGTTCTGCAAGTGTTAGCTGCTTCAAGTTAGT- 514
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 527 TTTGGTTTGTTTTTCAGAACAACACCATGTTCTGCAAGTGTTAGCTGCTTCGAGTTAGTT 586
Query 515 CGATGTATCGAATCTATGATTTGGTTGTTGATTACTCTTTTATTTGTTTTTGAATTTACA 574
| |||| | |||||||| ||||| | |||||||||||||||||||| | ||| |||||||
Sbjct 587 C-ATGTGTTGAATCTATTATTTGAT-GTTGATTACTCTTTTATTTGATGTTGGATTTACA 644
Query 575 ACTTGAGATACGTTGC 590
||||||||||||||||
Sbjct 645 ACTTGAGATACGTTGC 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28382293055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5