BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487736
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09270.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1011 0.0
> AT5G09270.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2878884-2880220
FORWARD LENGTH=676
Length=676
Score = 1011 bits (547), Expect = 0.0
Identities = 625/663 (94%), Gaps = 4/663 (1%)
Strand=Plus/Plus
Query 1 TTTTGCAAAGCTTTATAGGGTTTAAGAGCTATGGCTCTCTGAGCTTCATTTGGAAATCTT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 14 TTTTGCAAAGCTTTATAGGGTTTAAGAACTATGGCTCTCTGAGCTTCATTTGGAAATCTT 73
Query 61 CATTGTTCTTAGACGACTTTGTTTGACTCCAGGCTTAGTCAGGAGCTGATTTGGGATTTG 120
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 74 CATTGTTCTTCGACGACTTTGTTTGACTCCAGGCTTAGTCAGAAGCTGATTTGGGATTTG 133
Query 121 AGATGGCGACAGAGCAGAGCGGATTAGAAGATCAGGAGAGCCAACCAAACCAAGTGGCTC 180
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 134 AGATGGCGACAGAGCATAGCGGTTTAGAAGATCAGGAGAGCCAACCAAGCCAAGTGGCTC 193
Query 181 CTGGTTTTGTAGGAGCAATTGAAGAACAATACAAGAAACTCAAAGATCACGCCGAAGCTT 240
|||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 194 CTGGTTTTGTAGGAGCAATTGAAGAACAATACAAAAAACTCAGAGATCACGCTGAAGCTT 253
Query 241 ATCCATATGTTTGGGGTTCTTATACTGTTGTCTACGGCGGTCTATTCCTTTGGACAGCTT 300
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 254 ATCCATATGTTTGGGGTTCTTATACTGTTGTCTATGGTGGTCTTTTCCTTTGGACAGCTT 313
Query 301 ATAGATGGAGGAAACTTAGGAGAACCGAGGATCGAGTTCGTGGTCTTCAGACAAAACTTC 360
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 314 ATAGATGGAGGAAACTTAGGAGAACTGAAGATCGAGTTCGTGGTCTTCAGACAAAACTTC 373
Query 361 GGAAACTCGTTGAAGATGAACAAGCAGCAGTAACAGCTTCTAAATCTGCTCAGTCAATGG 420
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 374 GGAAACTCGTCGAAAATGAACAAGCAGCAGTAACAGCTTCTAAATCTGCTCAATCAGTGG 433
Query 421 ACAAGTCTTCTTCAATATCT-GACAAGAAAACGTCTTAATTAGTGATTTACATTCAAAAA 479
|||||||||||||||| || ||||||||||||||||||||||| | ||||| ||| ||
Sbjct 434 ACAAGTCTTCTTCAAT-TCCCGACAAGAAAACGTCTTAATTAGTAAGTTACAATCAGAAC 492
Query 480 CATTGTCTTTGTTAGACTTTTGACAAGGTTAGTTTCATCCAACCGAATCAATATTCCCGG 539
|||||||| ||||||||||||||| ||||||||||| | |||| ||||||||||||||||
Sbjct 493 CATTGTCTCTGTTAGACTTTTGACGAGGTTAGTTTCTTACAACGGAATCAATATTCCCGG 552
Query 540 GGTTTATCTGTTTTGTCACAGTACTTGTGTTCTTTATCCGCATAAAATTCATGTACATGA 599
||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 553 GGTTTATCTGTTTCGTCACAGTATTTGTGTTCTTTATCAGCATAAAATTCATGTACATGA 612
Query 600 ATGAAGAAGAGAAATTC-CTTATTTGTTGAAACGCTAAAAAGTCATGTTAAGCGTTGTTG 658
|||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 613 ATGAAGAAGAGAAAA-CGCTTATTCGTTGAAACGCTAAAAAGTCATGTTAAGCGTTGTTG 671
Query 659 TTC 661
|||
Sbjct 672 TTC 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5