BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487738
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09280.1 | Symbols: | Pectin lyase-like superfamily protein... 1432 0.0
AT5G09270.1 | Symbols: | unknown protein; Has 30201 Blast hits... 52.8 5e-06
> AT5G09280.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:2880423-2881597 REVERSE LENGTH=894
Length=894
Score = 1432 bits (775), Expect = 0.0
Identities = 859/899 (96%), Gaps = 7/899 (1%)
Strand=Plus/Plus
Query 1 ATGACGGGAAATATCGGTAAAGGAGTGACACAATACAAAGTAACCGACCCTTCTGATGAT 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGGGAAATATCGGTAAAGGAGTCACACAATACAAAGTAACCGACCCGTCTGATGAT 60
Query 61 CCTCTGAACCCTAAACCTGGAACCCTAAGATACGGAGCAACACTCGTCAAAGGTAAAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCTGAACCCTAAACCTGGAACCCTAAGATACGGAGCAACACTCGTCAAAGGTAAAAAA 120
Query 121 TGGATCACATTCAAAAGAAACATGAAGATCAAGCTTCATAAACCGCTTCTAATCAGCAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGATCACATTCAAAAGAAACATGAAGATCAAGCTTCATAAACCGCTTCTAATCAGCAGC 180
Query 181 TTCACGGCACTCGATGGTCGAGGTGCTAGTGTTCACATCTCGGGTCCTGCTTGCCTCATA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTCACGGCACTCGATGGTCGAGGTGCTAGTGTTCACATCTCGGGTCCCGCTTGCCTCATA 240
Query 241 GTCTATAAAGCCACCGATGTGATTATTCATGGACTTAAGATCCATGATTGTAAAGCTCAT 300
||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 GTCTATAGAGCCACCGATGTGATCATTCATGGGCTTAAGATCCATGATTGTAAAGCTCAT 300
Query 301 CCACCGAGCTCAGTGATGGGACCAGACTCAAAGATCATTCAACTTGGACA-AGTTGACGG 359
||||| ||||||||||||||||| |||||||||||||| ||||||||||| | | || ||
Sbjct 301 CCACCAAGCTCAGTGATGGGACCTGACTCAAAGATCATCCAACTTGGACACA-TGGATGG 359
Query 360 CGACGCGATTAGGCTAGTCACGGCTAAGAAAGTATGGATCGACCACAACACGCTCTATGA 419
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CGACGCTATCAGGCTAGTCACGGCTAAGAAAGTATGGATCGACCACAACACTCTCTATGA 419
Query 420 TTGCGAAGACGGTCTTCTAGACGTCACACGAGGGACTACTGATGTCACAGTGTCGAACAA 479
||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||
Sbjct 420 TTGCGAAGACGGTCTTCTAGATGTCACACTAGGGAGTACTGACGTCACAGTGTCGAACAA 479
Query 480 TTGGTTTAGGAACCAAGACAAGGTCATGCTTCTTGGACATGATGATGGCTATGTAAGAGA 539
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 TTGGTTTAGGAACCAGGACAAGGTCATGCTTCTTGGACATGATGATGGCTATGTAAAAGA 539
Query 540 CAAAGAAATGAGAGTCACTGTTGTGTTTAACCACTTTGGTCCTAATTGCAACCAGAGAAT 599
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAAGATATGAGGGTAACTGTTGTGTTTAACCACTTTGGTCCTAATTGCAACCAGAGAAT 599
Query 600 GCCAAGAGTGAGACATGGATATGCTCATGTTGCCAATAACTATTACCAAGGATGGACTCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCAAGAGTGAGACATGGATATGCTCATGTTGCCAATAACTATTACCAAGGATGGACTCA 659
Query 660 ATATGCAATTGGAGGAAGCATGAGCCCTCGAGTAAAGAGTGAATCAAATTATTTCGTGGC 719
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 660 ATATGCAATTGGAGGAAGCATGAGCCCTCGTGTAAAGAGTGAATCAAACTATTTCGTGGC 719
Query 720 ACCAAAATCCGGAAGCAAAGAGGTGTTGGAAAAGCACGGCCCAATTACGGTCCAGATCAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 ACCAAAATCCGGAAGCAAAGAGGTGTTGGAAAAGCACGGCCCAATTACGGCCCAGATCAA 779
Query 780 AGGTTCACTGTTGCAAACGCTAAGACTG-TTAAAGAACTCACTTCTTCAGCTGGAGCGTT 838
|||||||| || ||||||||||| || | |||||| ||||||||||||||| ||||||||
Sbjct 780 AGGTTCACAGTCGCAAACGCTAA-ACAGGTTAAAGTACTCACTTCTTCAGCCGGAGCGTT 838
Query 839 ACACTGCACCAGAAATTCCGTCTGTTAGAACAACAACAACGCTTAACATGACTTTTTAG 897
||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 839 ACACTGCACCAGAAACTCCGTCTGTTAGTACAACAAC---GCTTAACATGACTTTTTAG 894
> AT5G09270.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2878884-2880220
FORWARD LENGTH=676
Length=676
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 870 AACAACAACGCTTAACATGACTTTTTAG 897
||||||||||||||||||||||||||||
Sbjct 673 AACAACAACGCTTAACATGACTTTTTAG 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5