BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487745
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09330.1 | Symbols: anac082, VNI1, NAC082 | NAC domain conta... 2237 0.0
> AT5G09330.1 | Symbols: anac082, VNI1, NAC082 | NAC domain containing
protein 82 | chr5:2892365-2895421 REVERSE LENGTH=2193
Length=2193
Score = 2237 bits (1211), Expect = 0.0
Identities = 1468/1584 (93%), Gaps = 50/1584 (3%)
Strand=Plus/Plus
Query 2 GTTCTGGCTTATCCTTCACGCCA--CTCT-CTAAATC-C-CTCTCGCTCTCCTCCCCCTT 56
||||||||| |||||||||||| |||| ||| ||| | ||||||||||||||||||||
Sbjct 1 GTTCTGGCTCGTCCTTCACGCCACTCTCTCCTATATCTCTCTCTCGCTCTCCTCCCCCTT 60
Query 57 TGCGACGATCGTCCTTT-CCCACTGTCGAGTTTTtctctctctctcAAT-AGCAGGCTTT 114
| || |||||||||||| ||||| |||||||||||| | || || | || | ||||||
Sbjct 61 TCCGCCGATCGTCCTTTCCCCACCGTCGAGTTTTTC-C-CTATC-C-ATCTCCGGGCTTT 116
Query 115 ACGTTGCACACCAGATGTCTGTTGATCTCTGCAAGAAGAACCCATCTTTTCTTTGGTGTG 174
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 117 ACGTTGCACACCAGATGTCTGTTGATCTCTGCAAGAAGAATCCATCTTTTCTTTGGTGTG 176
Query 175 ACTGTGGTTATATGAGCAGGGGGAGGTTGTGGTGTTTTCAGATAATCCTCTTCAGGCACT 234
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 ACTGTGGTTATATGAGCAGGGGGAGGTTGTGGTGTTTTCAGATTATCCTCTTCAGGCACT 236
Query 235 -G----GACTTG------A---CTTG-C--CT-TCAC-TTCGTCGACT--TCTC-TC--T 270
| |||||| | || | | || || | ||| || || |||| || |
Sbjct 237 GGACTTGACTTGTCTTCAATTCCTCGACTTCTCTCTCTTTCTTCTTCTCCTCTCTTCTTT 296
Query 271 -TC-TTT-TC-----tttttttCTG-TTTACTTTGATCAAAGGGTATTCGCTTCTGCTGC 321
|| ||| || |||||||||| || | ||||||||||||||||||| |||||||||
Sbjct 297 CTCGTTTCTCTGTTTTTTTTTTCTGCTTGA-TTTGATCAAAGGGTATTCGTTTCTGCTGC 355
Query 322 TCCTGTTTACTGTGAATTTGAAGACTAAGTTTTCTGTGCAAAACTCTCACTTTACTGGTG 381
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 356 TCCTGTTTACTGTGAACTTGAAGACTAAGTTTTCTTTGCTAAACTCTCACTTTACTGGTG 415
Query 382 AGGAGTTTACGGAAGATTGTTCAAAGTTTTCCCCTTTGGA---TTCGCCAATGGGGAAAA 438
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 416 AAGAGTTTACAGAAGATTGTTCAAAGTTTTCCCCTTTGGATTCTTCGCCAATGGGGAAAA 475
Query 439 CTCAACTCGCTCCTGGATTTCGTTTCCATCCCACTGATGTTGAACTCGTGAGATATTACT 498
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 476 CTCAACTCGCTCCTGGATTTCGTTTCCATCCGACTGATGTTGAACTCGTGAGGTATTACT 535
Query 499 TGAAGAGGAAAGTACTGGGGAAAAAGCTCCTTGTCGATGCTATTGCTGAAGTTGACATTT 558
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGAAGAGGAAAATACTGGGGAAAAAGCTCCTTGTCGATGCTATTGCTGAAGTTGACATTT 595
Query 559 ACAAGTTTGAACCCCCTGATTTACCTGATATGTCCTTTATAAGAAGTGGGGATCTTAAGT 618
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 ACAAGTTTGAACCCCCTGATTTACCTGATATGTCTTTTATAAGAAGTGGGGATCTTAAGT 655
Query 619 GGCACTTCTTCTGCCCGAGGGAAAAGAAGTATGCTAGTGGGGTTAGGGCAAACCGTGCAA 678
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 656 GGCACTTCTTCTGCCCCAGGGAAAAGAAGTATGCTAGTGGGGTAAGGGCAAACCGTGCAA 715
Query 679 CTGAGTGTGGTTACTGGAAGACCACAGGGAAGGAGAGACCAGTTCTGTGCAATTCTGAAG 738
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 716 CTGAGTGTGGCTACTGGAAGACCACGGGGAAGGAGAGACCAGTTCTGTGCAATTCTGAGG 775
Query 739 TTGTGGGAAAGATAAAAACTCTGGTTTATCACTTTGGTAAGTCGCCTCGTGGGGAGCGGA 798
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 TTGTGGGAAAGATCAAAACTCTGGTTTATCACTTTGGCAAGTCGCCTCGTGGGGAGCGGA 835
Query 799 CTGATTGGGTTATGCATGAATATAGGCTTGAAGACAAGGTACTGACGCAGATGAATGTTC 858
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 836 CTGATTGGGTTATGCATGAATACAGGCTTGACGACAAAGTACTGACGCAGATGAATGTTC 895
Query 859 CTCAGGATACTTATGTGGTGTGTGTTCTGTTCAAGAAAGATGGCCCTGGACCTAGAAATG 918
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 CTCAGGATACTTATGTGGTGTGTGTTCTGTTCAAGAAAGATGGTCCTGGACCTAGAAATG 955
Query 919 GAGCTCAATATGGAGCTCCATTTAGGGAAGAGGACTGGAGTGATGAGGAACAACGTACTG 978
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 956 GAGCTCAATATGGAGCTCCGTTTAAGGAAGAGGACTGGAGTGATGAGGAAGTACGTACTG 1015
Query 979 ATGTTCCTTCTACTAGTAATCCCACAAACCTTCTTGAGCCTAGCAAAGAAACCACTCTGG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATGTTCCTTCTACTAGTAATCCCACAAACCTTCTTGAGCCTAGCAAAGAAACCACTCTGG 1075
Query 1039 CTTTGACTGCCCCAGATGACTCCAATAAGGATTGTTTTGGTGGCATGATATCAGAATCAT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 CTTTGACTGCCCCAGATGACTCCAATAAGGATTGTTTTGGTGGCATGATATCAGAGTCAT 1135
Query 1099 GCGTCTCCGATTTCCTACCAGCTACAACTAATACCACCAGCAAGCTTCCACATCCAAGTG 1158
| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 GTGTCTCGGATTTCCTACCAGCTACAACTAATACCACCAGCGAGCTTCCACATCCAAGTG 1195
Query 1159 ATGCAGCTAACACTCCTATGTCTACTGCACCTCTGGCAGAGACCCTTCAGACCCCCAACA 1218
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1196 ATGCAGCTACCACTCCTATGTCTACTGCACCTCTGGCAGAGACCGTTCAGACCCCCAACA 1255
Query 1219 ATGATGACTTATATTCAATGTTGGATCTATTTGATGATGACGAAGAATTCTTAGGGTTCA 1278
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 ATGATGACTTATATTCAATGTTGGATCTATTTGATGATGACGAAGAGTTCTTAGGGTTCA 1315
Query 1279 ACAATAATGAGGTAAGACATGATCCCGGTGTCTCAGCTCCAGTTTGCTTAGAAGAAGAAG 1338
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACAATAATGAGGTAAGATATGATCCCGGTGTCTCAGCTCCAGTTTGCTTAGAAGAAGAAG 1375
Query 1339 GCATTTTCAACGGATTACCAGAGTTGAGCAACATGCCAAGGACGGCCTCTTACGACCTAA 1398
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1376 GCATTTTCAACGGACTACCAGAGTTGAGCAGCATGCCAAGGACGGCCTCTTACGACCTAG 1435
Query 1399 TTGAAAACTCGGAGTTATACCTAGAGCTACAAGATCTCACTGCTCCATTAAATCCTCATA 1458
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1436 TTGAAAACTCGGAGTTATACCTAGAGCTACAAGACCTCACTGCTCCATTAAATCCCCAAA 1495
Query 1459 TTGGGCTACAAGACCTAAGTGCTCCATTGAATCCTCAAACTGGGATGCAAGACCTCACTG 1518
||||||||||||||| | ||||||||| ||||||||||||||| | |||||||||||||
Sbjct 1496 CTGGGCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACAAGACCTCACTG 1555
Query 1519 CCCCATTATA-TCCTCCAACTGGG 1541
| ||||| || || || |||||||
Sbjct 1556 CTCCATT-TAATCATCAAACTGGG 1578
Score = 462 bits (250), Expect = 5e-129
Identities = 409/480 (85%), Gaps = 33/480 (7%)
Strand=Plus/Plus
Query 1424 GCTACAAGATCTCACTGCTCCATTAAATCCTCATATTGGGCTACAAGACCTAAGTGCTCC 1483
||||||||| |||||||||||||| |||||||| | ||||||||| ||||| | | ||||
Sbjct 1695 GCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACATGACCTCACTTCTCC 1754
Query 1484 ATTGAATCCTCAAACTGGGATGCAAGACCTCACTGCCCCATTATATCCTCCAACTGGGAA 1543
||| ||||||||||||||| | |||||||||||||| |||||| |||||| |||||||||
Sbjct 1755 ATTTAATCCTCAAACTGGGCTACAAGACCTCACTGCTCCATTAAATCCTCAAACTGGGAA 1814
Query 1544 TCTCAATGACCCGAGAAGCTCCTCCTATCTGTATAATCAAGGCCACTTTGACTTCTCTGC 1603
|| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1815 TCGCAATGACCCGAGAAGCTCCTCCTTTCTGTATAATCAAGGCCATTTTGACTTCTCTGG 1874
Query 1604 TGCTAATGATGATGATCCTTATGGCTTTTCTGCTTCCGTGGGACATAGACCAAAAATGTG 1663
|| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1875 TGGTAATGATGATGATCCTTATGGCTTTTCTGCTTCCATGAGACATAGACCAAAAATGTA 1934
Query 1664 AAACGAG--GAAGAGAAGAGTAGCAGGATTTACAAAACAACAACAGATGCAAATCAGACA 1721
||| || ||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1935 AAAAAAGAAGAAGAGAAGAGAAGCAGGATTTACAAATC--CAACAGATGCAAATCAGACC 1992
Query 1722 GAAAAGAAGGAGGAG-AACCA--TT-GTTTCTTGTCTTTGAATT-T--TTT--A--A-T- 1768
||| ||||||||||| || || || |||||||||||||||||| | ||| | | |
Sbjct 1993 GAATAGAAGGAGGAGCAAGCACCTTTGTTTCTTGTCTTTGAATTATGATTTTTATTAGTC 2052
Query 1769 ----T-T-------GT--CGAAACTTCCCTATCAACTTTCTCTGCTTCATCCTTAGATTC 1814
| | || |||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 2053 AAAATCTTTTTAATGTGTCGAAACTTCCCTATCAACATTCTCTGTTTCATCCTTAGAATC 2112
Query 1815 TCGTACTTGTTT-GAAATATTCTCAACATTTATTCTTGTCTCTATTTTGCTATGAATTAT 1873
||||| || || || |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2113 TCGTATTTCTTCAGAG-TATTCTCAACATTTATTCTTGTTTCTATTTTGCTATGGATTAT 2171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5