BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487748

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09370.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   455    3e-127


> AT5G09370.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:2909363-2910545 
REVERSE LENGTH=634
Length=634

 Score =  455 bits (246),  Expect = 3e-127
 Identities = 374/432 (87%), Gaps = 23/432 (5%)
 Strand=Plus/Plus

Query  1    CACAACTCTCATTCTCTTCTCTCTCGATTC-T--TA-AGCAGTAACC-AAAACAGAGA-A  54
            ||||||||||||| |||||||||||||||| |  || | |||||||| |||||| ||| |
Sbjct  3    CACAACTCTCATTTTCTTCTCTCTCGATTCTTGATATATCAGTAACCAAAAACACAGAGA  62

Query  55   ACaaaaaaaaTGGCTTTCTTCTCCACCGCGACATCTCTTCTCCTCCTCGTTCTCTCTGTT  114
            |   |||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  63   A-TTAAAACATGGCTTACTTCTCCACAGCGACATCTCTTCTCCTCCTCGTCCTCTCTGTT  121

Query  115  TCCTCTCCTTATGTTCATGGAAACATTGTACCAGCCGACGAGTGTGACACCATTAATTAT  174
            |||||||||||||||||||||      |  ||  |||||   || |||||| ||  | ||
Sbjct  122  TCCTCTCCTTATGTTCATGGA------G--CCT-CCGAC---TGCGACACCCTTG-TGAT  168

Query  175  -ACCCTGTTGCCATGTTTACCTTTTATAACGATCGGGGGTCCGGCGGATACACCCTCAGC  233
             |||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| ||||
Sbjct  169  TACCCTGTTCCCATGTTTACCTTTTATATCGATCGGGGGTACGGCCGATACACCCACAGC  228

Query  234  TTCATGCTGCTCCAGTCTCCAGACTATTCTCGGTACGAAACCGGA-ATGTCTATGCAAAG  292
            ||||||||||||||||||| | | |||||||| |||||||||| | |||||||||| |||
Sbjct  229  TTCATGCTGCTCCAGTCTCAAAAATATTCTCGATACGAAACCG-ATATGTCTATGCGAAG  287

Query  293  GGTTGAAGAACCCACCTTTGGGAATCAAACTCAACGTTACTAGATCTACTACTCTCCCCG  352
            ||||||||||  ||||||| |||||||||||||||||||||| |||| ||||||| ||||
Sbjct  288  GGTTGAAGAAGGCACCTTTAGGAATCAAACTCAACGTTACTAAATCTGCTACTCTTCCCG  347

Query  353  TTGTTTGTAAACTTAATGCTCCTCCGGCGTCAGCTTGTGATGCATTGGCTCCTGCTAGTC  412
            ||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct  348  TTGCTTGTAAACTTAATGCTCCTCCGGTGTCAGCTTGTGATTCATTGCCTCCTGCTAGTC  407

Query  413  CTCCTGCTGCTA  424
            ||||| ||||||
Sbjct  408  CTCCTACTGCTA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32200088227


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5