BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487751
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09390.1 | Symbols: | CD2-binding protein-related | chr5:29... 1740 0.0
> AT5G09390.1 | Symbols: | CD2-binding protein-related | chr5:2913534-2915923
FORWARD LENGTH=1233
Length=1233
Score = 1740 bits (942), Expect = 0.0
Identities = 1079/1145 (94%), Gaps = 9/1145 (1%)
Strand=Plus/Plus
Query 1 CACCGCCTGGAAATCTACAAATCGTCGTTGTTCTCGTCTCATCAAGC-TGCTCCAATGGC 59
|||||||||||||| ||||||||||||||||||||||| | | || || | |||||||
Sbjct 7 CACCGCCTGGAAATAAACAAATCGTCGTTGTTCTCGTCT-A--ACGCTTG-TGCAATGGC 62
Query 60 AGAGAGTTCGTCGAGGAAGAACCTTAAACGATCCTTCTTAGAAGATGAAGATTCCAATAA 119
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 63 AGATAGTTCGTCGAGGAGGAACCTTAAACGATCCTTCTTAGAAGATGAAGATTCCGATAA 122
Query 120 GCAACCTCCCGAAAAGCGAGTACGGTTTCCAAAGGGTAAAAAGTCGAAAGGTGAACAGCT 179
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 123 ACAACCTCCCGAAAAGCGAGTACGGTTTCCAAAGGGGAAGAAGTCGAAACCTGAACAGCT 182
Query 180 CTTAGAGGAAGAAGCTGTAGCCCGCCGCAAAGCCCGTGATGCTGCTAAGGAGCGTGCACA 239
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 183 CTTAGAGGAAGAAGCTTTAGCCCGCCGCAAAGCCCGTGATGCTGCTAAGGAGCGTGCAAA 242
Query 240 TATTCGAAATCAGAATACTGCTAATCTCTTTATCGAAAACGATAATGACGATATTGATGC 299
||||| |||||||||||| |||| |||||||||||| | || | ||| |||||| || |
Sbjct 243 GATTCGCAATCAGAATACTACTAAGCTCTTTATCGAAGATGACAGTGATGATATTAAT-C 301
Query 300 -GGCTCAGGAGACTTATGAGGATGATGGGAATCGCACAGAAGATGGGATCCAAATTGAAG 358
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 302 AGGCTCAGGAGACTTATGAGGATGATGGCAATCGCACAGAAGATGGGATCCAGATTGAAG 361
Query 359 CTTTTAGTCTGGACAGAGAGAAAGAAGAAGGTTACTTTGATGCTGATGGGAACTTTGTAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTTTTAGTCTGGACAGAGAGAAAGAAGAAGGTTACTTTGATGCTGATGGGAACTTTGTAG 421
Query 419 AATATGTTAGAGAAAAGGAAGTCAAGGATGCATGGCTTGACAGTATTGaaaaaaaTCCGA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 AATATGTTAGAGAAAAGGAAGTCAAGGATGCATGGCTTGACAGTATTGAAAAAAATCCAA 481
Query 479 TGTATATGGGACGATCTGCTGCAAATGATACTGAGAAGGATGAAGATAGTGGGAACGAAA 538
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 482 TGTATATGGGACGATCTGCTGCAAATGATACTGAGATGGATGATGATAGTGGGAACGAAA 541
Query 539 AAGTAGCGGATGATCTTTCTCAAGATGAAATTGGAGTCAGAAAGAGGCGCATTGCTAATG 598
||| || |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 542 AAGCAGGGGATGACCTTTCTCAAGATGAAATCGGAGTTAGAAAGAGGCGCATTGCTAATG 601
Query 599 TCCTTGAACCAGGAGAAACGGTCCTGCGAGCTTTAAGGAGGTTGAAAGGGAATTCGAATA 658
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 602 TCCTTGAACCAGGAGAAACGGTCTTGCGAGCTTTAAGGAGGTTGAAAGGGAATTCGAATA 661
Query 659 ATCGCAAGGAGAAGATGACATCTGAGACAAAGCTTATATTTGATCAGCTTACTGAGGATG 718
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 662 ATCGCAAGGAGAAGATGACATCTGAGACCAAGCTTATCTTTGATCAGCTTACTGAGGATG 721
Query 719 CGGACAAGCTTATCGAGAACGGTGACTACAATGTTTATCATGAGGAGCAAGAAGTTTTCC 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 CGGACAAGCTTATCGAGAACGGCGACTACAATGTTTATCATGAGGAGCAAGAAGTTTTCC 781
Query 779 AACGTGAAGCAGAAGGATATGAGAGACTAGCTCAAGCGAAAGGAAATGGGACTGCCAAT- 837
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 AACGTGAAGCAGAAGGATATGAGAGACTAGCTCAAGCGAAAGAAAATGGGACTGCCAATA 841
Query 838 TCAGAATCTTGTGATATGTTTGGCGATGATGAGGATGCTCCTGAACCTTCCTCTGATCTA 897
| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 842 T-AGTATCTTGTGATATGTTTGGCGATGATGAGAATGCTCCTGAACCTTCCTCTGATCTA 900
Query 898 CTACCGTCTGGCTCTATCTCGGGCACTCAGCTCAATTCTGATTATGTGTTTGATGAGTCT 957
| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 901 CAACCGTCTAGCTCCATCTCGGGCACTCAGCTTAATTCTGATTATGTGTTTGATGAATCT 960
Query 958 TCAGGGTACTACTACAGCAGTAGCCTTGGTTACTATTATGACCCTAACACTGGACTTTAC 1017
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 961 TCAGGGTACTACTACAGCAGCAGCCTTGGTTACTATTATGACCCGAACACTGGACTTTAC 1020
Query 1018 TGCTCCGCAACAACCGGAAAATGGTACAAGTACGACGAAGAGACTAAGGAATATGAAGAG 1077
|||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1021 TGCTACGCAACAACCGGAAAATGGTACAGGTACGATGAAGAGACTAAGGAATATAAAGAG 1080
Query 1078 GTGGTTTCTGAAGTTGCTACTGAGGAAGTTTAAATTTCTTTTGTCTGTACTTTTAACCAA 1137
||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| || ||
Sbjct 1081 GTGGTTTCTGAAGTTGCTACTGAAGAAGTTTAATTTTCGTTTGTCTGTACTTTTGACTAA 1140
Query 1138 CACAG 1142
|||||
Sbjct 1141 CACAG 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5