BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487757
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09440.1 | Symbols: EXL4 | EXORDIUM like 4 | chr5:2938347-29... 1576 0.0
AT5G64260.1 | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703929-2... 429 3e-119
> AT5G09440.1 | Symbols: EXL4 | EXORDIUM like 4 | chr5:2938347-2939461
FORWARD LENGTH=1115
Length=1115
Score = 1576 bits (853), Expect = 0.0
Identities = 1051/1141 (92%), Gaps = 36/1141 (3%)
Strand=Plus/Plus
Query 1 ATATTCGAAAACAGAACAAAACCTCTCTGCTCTATCTCTCTCTATATACTCCCAAAATGG 60
|||||| ||||||||||| || | || |||| |||| |||||||||||||||||||||
Sbjct 1 ATATTCAAAAACAGAACACAA---C-CT-CTCT-TCTCACTCTATATACTCCCAAAATGG 54
Query 61 CCTATAATTACCGTTTTGCCATTCTTCTCGTTCTCCTCTCCGCCACCGTCGGCTTCT-CC 119
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 55 CTTATAACTACCGTTTTGCCATTCTTCTCGTTCTCCTCTCCGCCACCGTCGGCTT-TACC 113
Query 120 TCCGCCGCGTTGGTCCAGAAGAAGCCTCCGGTGCCTACCTTGAAAGGAAACATCACTCTC 179
| |||||| | | |||||||||||| | |||||||| |||||||| |||||
Sbjct 114 GCAGCCGCG-T--T------GAAGCCTCCGGTTCGAACCTTGAACGGAAACATTACTCTT 164
Query 180 AATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGGTCCGTAATCGTCGATTTCATC 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 165 AATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGGTCCATAATCGTCGATTTCATC 224
Query 240 CGCTCTATCAGTTCCGTCGCCGCCGCAAAAGGTCCCTCCGTCGCGTCGTGGTGGAAGACT 299
|||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 225 CGCTCTATCAGTTCTGTCACCGCCGCCAAAGGTCCATCCGTCGCGTCGTGGTGGAAGACG 284
Query 300 ACGGAGAAGTAC-AAACAAGGTGTCTCAACTCTTGTCGTCGGTAAACAGCTCCTCCTTGA 358
|||||||||||| |||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 285 ACGGAGAAGTACAAAAC-CGGCGTTTCAACTCTTGTTGTCGGTAAACAGCTCCTCCTTGA 343
Query 359 GAACTACCCTCTCGGAAAATCCCTAAAGAGCCCTTACCTTCGTGCTCTATCAAGCAAACT 418
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 344 GAATTACCCTCTCGGAAAATCCCTAAAGAGCCCTTACCTTCGTGCTCTGTCAAGCAAACT 403
Query 419 TAACGGC-GGTGGTGCTCGGTCAATAACCGTCGTTTTAACGGCGAAAGACGTCACCGTCG 477
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 404 TAAC-GCTGGTGGTGCTCGGTCAATAACCGTCGTCTTAACGGCGAAAGACGTCACCGTTG 462
Query 478 AGGGACTCTGTATGAACCGGTGCGGGACTCACGGGTCAAAGTCACGTTCCGTTAACAGTG 537
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 463 AGGGACTCTGTATGAACCGATGCGGGACTCACGGGTCAAAGTCAAGTTCCGTTAACAGTG 522
Query 538 GAGCTTACGTGTGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAGCTTACGTGTGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGT 582
Query 598 TTCATCAGCCTATCTACGGACCTCAGACCCCGCCGTTAGTCGCGCCTAACGGTGACGTCG 657
|||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 583 TTCATCAGCCTATCTACGGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCG 642
Query 658 GAGTCGACGGAATGATTATAAACCTCGCGACTCTTCTTGTTAACACCGTTACGAATCCGT 717
|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 643 GAGTTGACGGAATGATTATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702
Query 718 CTCAAGAAGCTGTTTCGGCTTGTACCGGGATATTCGGTTCGGGTGCTTACCCAGGTTACG 777
||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 703 CTCCAGAAGCTGTCTCGGCTTGTACCGGGATATTCGGTTCGGGTGCTTACCCGGGTTACG 762
Query 778 CGGGTCGGGTTCTTGTAGACAAGACAAGTGGAGCAAGTTACAACGCTTTGGGTCTCGCCG 837
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 763 CGGGTCGGGTTCTCGTAGACAAGACGAGTGGAGCGAGTTACAACGCTTTGGGTCTCGCCG 822
Query 838 GTAGAAAATATCTTTTGCCGGCGTTGTGGGATCCGCAGACTTCGACGTGTAAGACTTTGG 897
||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 823 GTAGAAAATATCTATTGCCGGCGTTGTGGGATCCTCAGACTTCGACGTGTAAAACTATGG 882
Query 898 TTTGATTTTTAGACGGTC-GTGAACGAGACACGTGGCAAGAATGGATGGTGATTGCGAGT 956
||||| ||||||| |||| |||||||||||||||||| ||||| |||||||||| |
Sbjct 883 TTTGAATTTTAGATGGTCTGTGAACGAGACACGTGGCTAGAATTGATGGTGATT---A-- 937
Query 957 TTAAAAGCTTGTTGTAGTCAAAGAAAGTT-GTAGATATATCTATCGCGTCTGGTTCGGGG 1015
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 938 --AAA-GCTTGTTGTAGTCAAAGAAAGTTTGTAGATAT--CTATCGCGTCTGGTTCGGAG 992
Query 1016 TTTGGGGAAAGGGATTGTGTTTGTTTTGTCATTTTGTTATGCCCTGT--AAATTCGATCT 1073
||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 993 TTTGGGGAAAGGGAT-GTGTTTGTTTTGTTATTTTGTTATGCCCTGTGTAAATTCGATCT 1051
Query 1074 TTGGAAATATGTGAAATATAGATTCATATATCTATTTTAATAAAAACGATTTGTAGTTTC 1133
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1052 TTGGAAATATGTGAAAGATAGATTCATATATCTATTTTAATAATAACGATTTGTAGTTTC 1111
Query 1134 C 1134
|
Sbjct 1112 C 1112
> AT5G64260.1 | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703929-25705316
FORWARD LENGTH=1388
Length=1388
Score = 429 bits (232), Expect = 3e-119
Identities = 474/586 (81%), Gaps = 36/586 (6%)
Strand=Plus/Plus
Query 159 TTGAAAGGAAACATCACTCTCAATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGG 218
|||||||| |||||||| |||||||| | |||||||| |||||||| || |||||||||
Sbjct 172 TTGAAAGGTAACATCACAGTCAATCTCGTATGGTACGGGAAATTCACACCGATCCAACGG 231
Query 219 TCCGTAATCGTCGATTTCATCCGCTC--TA---TC-A--G---TTCCGTCG-CCGCCGCA 266
|||||||||||||||||||||| ||| || || | | || | || ||||||||
Sbjct 232 TCCGTAATCGTCGATTTCATCCACTCGCTAAACTCCAAAGACGTTGCATCTTCCGCCGCA 291
Query 267 AAAGGTCCCTCCGTCGCGTCGTGGTGGAAGACTACGGAGAAGTACAAACAAGGTGTCT-C 325
| ||| ||||| || |||||||||||||| |||||||| |||||| || ||| |
Sbjct 292 ---GTTCCTTCCGTTGCTTCGTGGTGGAAGACGACGGAGAAATACAAAGGTGGC-TCTTC 347
Query 326 AACTCTTGTCGTCGGTAAACAGCTCCTCCTTGAGAACTACCCTCTCGGAAAATCCCT-AA 384
||| || |||||||| |||||||| || || |||||||| |||||||||||||| || ||
Sbjct 348 AACACTCGTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCTCGGAAAATCTCTCAA 407
Query 385 AGAGCCCTTACCTTCGTGCTCTATCAAGCAAACTTAACGGCGGTGGTGCTCGGTCAATAA 444
| | || |||||| |||||| |||| | |||||||||||||||| | | || || ||||
Sbjct 408 AAATCC-TTACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTC-T-C-CGTTCCATAA 463
Query 445 CCGTCGTTTTAACGGCGAAAGACGTCACCGTCGAGGGACTCTGTATGAACCGGTGCGGGA 504
|||||||| ||||||||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 464 CCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGGA 523
Query 505 CTCACGGGTCAAA-G-T-C-A--C---GTT-C-C-GTTAACAGTG-GAGCTTACGTGTGG 551
||||||| || | | | | | || | | | |||| | | | |||||||| |||
Sbjct 524 CTCACGGATCCTCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCG-GCTTACGTATGG 582
Query 552 GTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCTATC 611
||||| ||||| || |||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct 583 GTCGGGAACTCCGAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCACCAGCCGATT 642
Query 612 TACGGACCTCAGACCCCGCCGTTAGTCGCGCCTAACGGTGACGTCGGAGTCGACGGAATG 671
|||||||| || || ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 643 TACGGACCACAAACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGTTGACGGAATG 702
Query 672 ATTATAAACCTCGCGACTCTTCTTGTTAACACCGTTACGAATCCGT 717
||||||||||| || || ||||| | ||||||||| ||||||||||
Sbjct 703 ATTATAAACCTTGCCACACTTCTAGCTAACACCGTGACGAATCCGT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5