BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487758
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09450.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2266 0.0
> AT5G09450.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:2941798-2943668 FORWARD LENGTH=1640
Length=1640
Score = 2266 bits (1227), Expect = 0.0
Identities = 1448/1554 (93%), Gaps = 17/1554 (1%)
Strand=Plus/Plus
Query 1 CTCCAAGTAAGAGATGGGTTTTTAGATCTTTTTGGT-GGTT-AGAC-GAACTGAGAA-TC 56
||| ||||||| ||| |||||||||||||||||||| || || | ||||||| || ||
Sbjct 7 CTCGAAGTAAGTGATCGGTTTTTAGATCTTTTTGGTCTCTTCAGTCGGAACTGAAAATTC 66
Query 57 TATGGCGACTCGCTCGCTCTTCCATAGTCTTAGATGTCGATTGACGAATAATGGTCTTCT 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 67 -ATGGCGACTCGCTCGCTCTTCCATAGTCTTAGATGTCGATTGACGAATAATGGTGTTCT 125
Query 117 CGGAAGCAATTTCATTCGGAACGCCGAATCGTCGTCACGATTCTCCAAGTCGTACAATGC 176
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 126 CGGAAGCAATTTCATTCGAAACGCCGAA---TCGTCACGATTCTCCAAGTCGTACAATGC 182
Query 177 TGATGCAGCTATCGGAGGCTCCCTTGTTGAGGAATCGGAGGAGAAAGACGATCTGAAGAG 236
||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 183 TGACGCAGCAATCGGAAACTCCCTTGTCGAGGAATCGGAGGAGAAAGACGATCTGAAGAG 242
Query 237 CAGGATTTTCAGATTGAGACTTCCCAAACGGAGCGCGACTACTGTTCTCGAGAAATGGGT 296
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 243 CAGGATTTTCAGATTGAGACTTCCGAAACGTAGCGCGACTACTGTTCTCGAGAAATGGAT 302
Query 297 TGGTGAAGGGAATCAGATTACGATCAATGAACTTCGAGAGATCTCTAAAGAGCTTAGGAG 356
||| ||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 303 TGGAGAAGGGAATCAAATGACTATCAATGAACTCCGAGAGATCTCCAAAGAGCTTAGGAG 362
Query 357 AACTCGGCGTTACAAGCACGCTCTTGAGGTTACAGAGTGGATGGTTCAGCATGAAGAATC 416
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 363 AACTCGCCGTTACAAGCACGCTCTTGAGGTTACAGAGTGGATGGTACAGCATGAAGAATC 422
Query 417 AAAGGTCTCAGATGCTGATTACGCGTCGCGGATAGATCTCATTTCAAAAGTTTTCGGGAT 476
|||| ||||||||||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct 423 AAAGATCTCAGATGCTGATTACGCCTCACGCATAGATCTGATTTCAAAAGTTTTCGGGAT 482
Query 477 CGATGCGGCTGAACGCTACTTTGAAGGTCTGCATATAGATGCAAAGACAACTGAAACCTA 536
|||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 483 CGATGCAGCTGAACGCTACTTTGAAGGTCTGGATATAGATTCAAAGACAGCTGAAACCTA 542
Query 537 TACCTCTCTCCTTCATGCTTATGCTGGCTCCAAACAAACCGACCGAGCTGAGGCCTTGTT 596
||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 543 TACTTCTCTCCTTCATGCTTATGCTGCCTCCAAACAAACCGAACGAGCCGAGGCCTTGTT 602
Query 597 CAAGAGAATCATTGAGACTGATAGTCTCAGTTTCGGTGCCATCACATACAACGAGATGAT 656
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 603 CAAGAGAATCATTGAGAGTGATAGTCTCACTTTTGGTGCCATCACATACAACGAGATGAT 662
Query 657 GACTTTATACATGTCAGTCGGACAAGTTGAGAAAGTACCCGAGGTTATCCAAGTGTTAAA 716
|||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 663 GACTTTATACATGTCAGTTGGGCAAGTTGAGAAAGTACCTGAGGTTATTGAAGTGTTAAA 722
Query 717 GCACAAAAAGGTTTCTCCGGATATTTTTACTTACAATTTGTGGTTAAGTTCATGTGCTGC 776
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 723 GCAGAAAAAGGTTTCTCCGGATATTTTTACTTATAATTTGTGGCTAAGTTCATGTGCTGC 782
Query 777 AACCTTTAATATAGATGAACTCAGAAGGATTCTTGAAGAGATGAGGCATGATGCTAGTTC 836
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 783 AACCTTTAATATAGATGAGCTTAGAAAGATTCTTGAAGAGATGAGGCATGATGCTAGTTC 842
Query 837 CAATGAGGGTTGGGTTCGATATATCAATCTTACTAGCATCTATATAAACAGTAGTAGAGT 896
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 843 CAATGAGGGTTGGGTTCGGTATATCGATCTTACTAGCATCTACATAAACAGTAGTAGAGT 902
Query 897 AACTAATGCAGAGTCTGCCTTACCCGTAGAAGCTGAGAAATCTATTTCGCAAAGAGAATG 956
|||||||||||||||| | || || || ||||||||||||||||||||||||||||||||
Sbjct 903 AACTAATGCAGAGTCTACTTTGCCTGTCGAAGCTGAGAAATCTATTTCGCAAAGAGAATG 962
Query 957 GATCACATATGACTTCCTTATGATTCTGCACACTGGACTAGGGAACAAGGTTATGATTGA 1016
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 963 GATCACATATGACTTCCTTATGATTCTGCACACTGGTCTAGGGAACAAGGTTATGATAGA 1022
Query 1017 TCAGATTTGGAAATCTTTGGGAAACACCAACCAGAAATTGAGTAGTAGAAGCTACATTTG 1076
|||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1023 TCAGATTTGGAAGTCTTTGAGAAACACCAACCAGATATTGAGTAGTAGAAGCTACATTTG 1082
Query 1077 TGTCCTTTCATCTTATCTAATGCTGGGTCATATGAGAGAAGCCGAGGAGATTATCCATCA 1136
||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1083 TGTTCTTTCATCTTATCTAATGCTTGGTCATTTGAGAGAAGCCGAGGAGATTATCCATCA 1142
Query 1137 GTGGAAGGAGTCTAAAACGACAGAGTTTGATGCTTCTGCTTGCTTGAGGATCTTGAATGC 1196
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GTGGAAAGAGTCTAAAACGACAGAGTTTGATGCTTCTGCTTGCTTGAGGATCTTGAATGC 1202
Query 1197 TTTTCGAGATGTCGGTTTAGAGGGAGTAGCCAGCGGCTTTCACTTGCTCTTGGTGCATTA 1256
|||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 1203 TTTTCGAGATGTTGGTTTAGAGGGAATAGCCAGCGGCTTTCACTTGATCTTGGTGCATAA 1262
Query 1257 CAAATGCAGCTTGGAGAATGAAGTATTATCTTAAGATGGGGTCTCTGAGAAATAAGTTG- 1315
||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1263 CAAATGCAGCTTGGAGAATGAAGGATCATCTTAAGATGG--------AGAAATAAGTTGG 1314
Query 1316 TGACAATTTTATGCTCTTGGCAAGAAGAATCAGATCAAGCTCATCAATCATGGTGGATGA 1375
||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1315 TGAAAATTTTATGCTCTTAGCAAGAAGAATCAGATCAAGCTCATTAATCATGGTGGATGA 1374
Query 1376 ATAAAATAGAGGTTTCTTCTCTGCACTGTGATTCTTAATTATCTTTTTGTTCTTTTCGTC 1435
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 1375 ATAAAATAGAGGTTTCTTCTCTTCACTGTGATTCTTAAATATCTTTTTGTTCTTTACGTG 1434
Query 1436 AGAGGTCATGAGACACATAGATTTGCTCACCAGAATATTTTGCTGCATAGTCGGAAGATT 1495
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1435 GGAGGTCATGAGACACATAGATTTCCTCACCAGAAGATTTTGCTGCATAGTCGGAAGATG 1494
Query 1496 TGTTTCCTTAGGCCAGGCCCATAACATTTCATGTGTAACGTCAAATTTCaaaaa 1549
||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1495 TGTTTCCTTAGGCAAGGTCCATAACATTTCATATGTAACGTCAAATTTCAAAAA 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5