BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487764
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09480.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 800 0.0
> AT5G09480.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:2950914-2951693 REVERSE LENGTH=780
Length=780
Score = 800 bits (433), Expect = 0.0
Identities = 563/622 (91%), Gaps = 23/622 (4%)
Strand=Plus/Plus
Query 1 CAAAACACAAACTCTCTATATTCACAACATTATTTAACTCATCTTTCTAAGTTGGTTTCC 60
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 3 CAAAACACAAACTCTCTATACTCACAACATTGTTTAACTCATCTTTCTAAGTTGGTTTCG 62
Query 61 ATTCAAGAATATCGCAATGATTAATGTTCGCCTTCCTATTCTTGTCTCTTCGGttttttt 120
||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||| || ||
Sbjct 63 ATTCAAGAATATCACAATGACTAATGTTCGCCTTCCTATTCTCGTCTCCTCGGTCTTGTT 122
Query 121 CCTTGTCTTTATTTCGTCGTCCCTCTTGTTCGCTACACCTAGTTTTGCTGCTAGAGTAAG 180
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 123 CCTTGTCTTTATTTCATCGTCCCTCTTGTTCCCTACACCTAGTTTTGCTGCTAGAGTAAG 182
Query 181 TCAATCTCTGGTGCATGAAGAGGTCACAAAGATTCCAGAATACACAGAACCTGAGGAGCC 240
||| ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 183 TCATTCTCTGGTGCAAGAAGAGGTCAAAAAGGTTCCAGAATACACAGAACCTGAGGAGCC 242
Query 241 GGA-GATTCCAGAAGAGCCGGAGCTGCCGTCACCGGAGGAGCCTGAGATTCCAGAAGAAC 299
||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 243 GGAAG-TTCCAGAAGAGCCGGAGCTGCCCTCACCGGAGGAGCCTGAGATTCCAGAAGAGC 301
Query 300 CAGAGATTCCAGAAGAGCCTGAGGTTCCTGGGGAACCCGAAGTTCCTGAGGAGCCCGAAG 359
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 302 CTGAGATTCCAGAAGAGCCTGAGGTTCCTGGAGAACCCGAAGTTCCTGAAGAGCCCGAAG 361
Query 360 AACCAGAAGGGCCAGAA---T-----TTGGA-TTTCCATCATGGATTCCGAGCTTTCCT- 409
||||||||| ||||||| | || || |||||||||||| ||||||||||||||
Sbjct 362 AACCAGAAGAGCCAGAAGGGTCAACATTTGAATTTCCATCATGGTTTCCGAGCTTTCCTA 421
Query 410 TTCCCCGGTGTTAATGGCGGTTTACCAAAGAGTGAAAAGACAAAACCTACATCAACAGCT 469
||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 422 TTCCC-GGTGTTAATGGCGGTTTGCCAAAGACTGAAAAGACAAAACCTACATCAACAGTT 480
Query 470 GAAGAAGTTAACGGTTCTAACAAGAAGCCATAGATCAACGGGTGAAGAACGTCAAAAGGA 529
||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||| | |
Sbjct 481 GAAGAGGTTAACGTTTCTAACAAGAAGCCATAGATCAATGGGTAAAGAACGTCAAATG-A 539
Query 530 Ttatataag-tatatatgcaataatatatataGTTTTGGT--GTGTTTGATTAAAGATGA 586
|||||||| |||||||||||| |||| |||||||| ||||||| ||||||||||
Sbjct 540 TTATATAAACTATATATGCAAT--TATA----GTTTTGGTTTGTGTTTGGTTAAAGATGA 593
Query 587 GAGAATACTTATGTATTAGAGT 608
|||| ||| ||||||||| |||
Sbjct 594 GAGATTACATATGTATTACAGT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5