BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487766
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 979 0.0
AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 595 1e-169
AT1G04270.1 | Symbols: RPS15 | cytosolic ribosomal protein S15 ... 468 3e-131
> AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2953913-2954918 REVERSE LENGTH=652
Length=652
Score = 979 bits (530), Expect = 0.0
Identities = 581/605 (96%), Gaps = 5/605 (1%)
Strand=Plus/Plus
Query 20 TTCGAGGAATTCCAAACAATCAATGGCGGATCCAGAGGTTGCTGCGGCTGGAATCGTGAA 79
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 48 TTC-AGCAATTCCAAACAAACAATGGCGGATCCAGAGGTTGCTGCGGCTGGAATCGTAAA 106
Query 80 AAAGAGAACGTTCAAAAAGTTTTCTTTCAGAGGAGTTGATCTTGATGCTCTTCTCGACAT 139
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 107 AAAGAGAACGTTCAAAAAGTTTTCCTTCAGAGGAGTCGATCTTGATGCTCTTCTCGACAT 166
Query 140 GTCTACTGATGATCTTGTCAAGCTCTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGG 199
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 167 GTCTACTGATGATCTTGTCAAGCTTTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGG 226
Query 200 ATTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGCAAAGCGAAAATTGAAGCACC 259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 227 ATTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGGAAAGCGAAAATTGAAGCACC 286
Query 260 AGCCGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGGTCATTGTGCCTGA 319
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 287 AGCTGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGATCATTGTGCCTGA 346
Query 320 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAAGTCGAGATCAA 379
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 347 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAGGTCGAGATCAA 406
Query 380 ACCAGAGATGATTGGACATTACTTGGCTGAGTTCTCAATCTCATATAAGCCGGTTAAGCA 439
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 407 ACCAGAGATGATTGGACATTACTTGGCTGAGTTTTCAATCTCATATAAGCCTGTTAAGCA 466
Query 440 CGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATCCCTCTCAAGTGAATAAT 499
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 467 TGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGATTTATCCCTCTCAAGTGAATAAT 526
Query 500 CAAGCTCTTGTGGAGAGTCTTTGTTATGCTCAAAAtttgagtctttcgtttctttttatt 559
||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 527 CAAGCTCTTGTGGAG--T-TTTGTTATGCTCTAAATTCGAGTCTTTCGTTTCTTTTTCTT 583
Query 560 tg-gaacattttgtctctctttttctcttctctcctttagattttGTTCAAACTCTTGTT 618
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TTAGAACATTTTGTCTTTCTTTTTCTCTTCTCTCCTTTAGATTTTGTTCAAACTCTTGTT 643
Query 619 CATGC 623
|||||
Sbjct 644 CATGC 648
> AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:17531302-17532370 FORWARD LENGTH=450
Length=450
Score = 595 bits (322), Expect = 1e-169
Identities = 408/450 (91%), Gaps = 4/450 (1%)
Strand=Plus/Plus
Query 47 GGATCCAGAGGTTGCTGCGGCTGGAATCGTGAAAAAGAGAACGTTCAAAAAGTTTTCTTT 106
||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 3 GGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTT 62
Query 107 CAGAGGAGTTGATCTTGATGCTCTTCTCGACATGTCTACT-GATGATCTTGTCAAGC-TC 164
||||||||| ||||| ||||| |||||||||||||| | | || ||||||||||| | |
Sbjct 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCA-TCGAAGATCTTGTCAAACAT- 120
Query 165 TTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTG 224
||| ||||||||| || |||||||| |||||||||||||| || || ||||||||||||
Sbjct 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180
Query 225 ATCAAGAAACTGCGCAAAGCGAAAATTGAAGCACCAGCCGGAGAGAAGCCAGCAGCAGTG 284
|| |||||| |||||||||||||||| || |||||||| || |||||||||||| |||||
Sbjct 181 ATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTG 240
Query 285 AGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTT 344
||||| ||| | ||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 241 AGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTG 300
Query 345 TACAATGGAAAGACTTTTAACCAAGTCGAGATCAAACCAGAGATGATTGGACATTACTTG 404
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 301 TACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTG 360
Query 405 GCTGAGTTCTCAATCTCATATAAGCCGGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACC 464
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACC 420
Query 465 AATTCCTCCAGGTTTATCCCTCTCAAGTGA 494
||||||||||||||||||||||||||||||
Sbjct 421 AATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
> AT1G04270.1 | Symbols: RPS15 | cytosolic ribosomal protein S15
| chr1:1141604-1143053 REVERSE LENGTH=800
Length=800
Score = 468 bits (253), Expect = 3e-131
Identities = 384/448 (86%), Gaps = 6/448 (1%)
Strand=Plus/Plus
Query 51 CCAGAGGTTGCTGCGGCTGGA-ATCGTGAAAAAGAGAACGTTCAAAAAGTTTTCTTTCAG 109
|||||||||||||| |||||| || || ||||| ||||| || |||||| | ||||
Sbjct 109 CCAGAGGTTGCTGCTGCTGGAGTTC-CCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAA 167
Query 110 AGGAGTTGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTCTTCCC 169
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 168 AGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTC 227
Query 170 TTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCAA 229
||| ||||| |||||||||||||||||||| ||||| |||||||| |||||| |||| ||
Sbjct 228 TTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAA 287
Query 230 GAAACTGCGCAAAGCGAAAATTGAAGCACCAGCC-GGAGAGAAGCCAGCAGCAGTGAGAA 288
||| ||| | |||||||||| || |||||| | || |||||||||| | |||||||||
Sbjct 288 GAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCAGTGAGAA 346
Query 289 CCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACA 348
||||| | ||||||||| |||| || |||||||||||||||||| |||| || || ||||
Sbjct 347 CCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACA 406
Query 349 ATGGAAAGACTTTTAACCAAGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTG 408
| ||||||||||| ||||| || |||||||| || ||||||||||| || ||| ||||||
Sbjct 407 ACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTG 466
Query 409 AGTTCTCAATCTCATATAAGCCGGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACCAATT 468
||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| | |
Sbjct 467 AGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACT 526
Query 469 CCTCCAGGTTTAT-CCCTCTCAAGTGAA 495
| ||||| || || ||| || |||||||
Sbjct 527 CTTCCAGATTCATTCCC-CTTAAGTGAA 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5