BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487769

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09520.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   678    0.0  


> AT5G09520.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr5:2958292-2958856 REVERSE LENGTH=565
Length=565

 Score =  678 bits (367),  Expect = 0.0
 Identities = 448/487 (92%), Gaps = 6/487 (1%)
 Strand=Plus/Plus

Query  1    ATGGCATTGAAGAAGA-TTCTCTCTGCTTCTCTTCTTTCACCATTTCTGATCATATGTAT  59
            ||| |||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
Sbjct  1    ATGACATTGAAGAAGAGTT-TCTCTGCTTCTCTACTTTCACCATTTCTGATCATATGTCT  59

Query  60   TATTGCATTGCTCTCTGTTCCGGTATCAGTTGGAGCTCGCCGGTTATTGGAAGATCCTAA  119
            |||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct  60   TATTGCATTGCTTTCTGTTCCGGTATCCGTTGGAGCTCGCCGGTTATTGGAGGAACCTAA  119

Query  120  ACCAGAGATACCGACATTGCCGGAGCTACCTAAACTAGAGATGCCAAAGTTACCCGAATT  179
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct  120  ACCAGAGATACCGACATTTCCGGAGCTACCTAAACCAGAGATGCCAAAGTTACCCGAATT  179

Query  180  TCCGAAGCCT-GAGTTGCCTAAGATT-CCGGAGATTCCCAAGCCAGAGTTGCCAAAGATG  237
            ||||||| || |||||||||||| || || |||||||| || |||||| |||| ||| | 
Sbjct  180  TCCGAAG-CTAGAGTTGCCTAAG-TTACCTGAGATTCCAAAACCAGAGATGCCTAAGTTA  237

Query  238  CCGGAGATTCCGAAGCCTGAATTGCCGACGTTTCCAGAGATGCCGAATATGCCGGAATTT  297
            |||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct  238  CCGGAGATTCAGAAGCCTGAATTGCCGACGTTTCCAGAGTTACCGAAGATGCCGGAATTT  297

Query  298  CCCAAGTTCGATGCCCCAAAGTTACCGGAATTGCCAAAACCAGAAGAAACCAAAGTGCCG  357
            ||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  298  CCCAAGTTCGATTTTCCAAAGTTGCCGGAATTGCCAAAACCAGAAGAAACCAAAGTGCCG  357

Query  358  GCGTTTACAATGCCAAAGTTTCCTGGATCTCCATAAGCCCATTATATCAGAAGAAGGCCC  417
            |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct  358  GCGTTTACAATGCCAAAGTTTCCTGGATCTCCTTAAGCCCATTACACCAGAAGAAGGCCC  417

Query  418  AGCTACTTTGGAGCCCAGTCCAATTTTCTGAAATTGTTGTATCACCCCTTGTATTATTTG  477
            | ||||||||||||||| || ||||| |||||||||| ||||||||||||||||| ||||
Sbjct  418  ATCTACTTTGGAGCCCATTCTAATTTACTGAAATTGTCGTATCACCCCTTGTATTGTTTG  477

Query  478  TCTATTT  484
            |||||||
Sbjct  478  TCTATTT  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5