BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487770
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09530.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1242 0.0
AT5G09520.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 209 5e-53
> AT5G09530.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:2959734-2961271 REVERSE LENGTH=1538
Length=1538
Score = 1242 bits (672), Expect = 0.0
Identities = 957/1088 (88%), Gaps = 46/1088 (4%)
Strand=Plus/Plus
Query 1 ATcacaaacacaaaccaacaacaaacaccacaaacaaagcaaaagaagaaacaaaagcaa 60
|||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 1 ATCACAAACACAAAGCAACAACAAACACCAC--A-AAAGCAAAAGAAGAAACAAACGCAA 57
Query 61 gagttctcaagcaagcTCAGACATGGCACTAATGAAGCAGAGTCTCTCTGCTGCTCTTCT 120
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 58 GAGTTCTCAAGCAAGCTCAAACATGGCACTAATGAAGAAGAGTCTCTCTGCTGCTCTTCT 117
Query 121 CTCATCACCACTTCTGATCATATGTCTTATTGCATTGCTCGCTGATCCGGTTTCAGTCGG 180
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 118 CTCATCACCACTTCTGATCATATGTCTTATCGCATTGCTCGCTGATCCGTTTTCAGTCGG 177
Query 181 TGCTCGCCGGTTATTGGAGGATCCTAAACCGGAGATACCAAAATTGCCTGAGCTACCTAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGCTCGCCGGTTATTGGAGGATCCTAAACCGGAGATACCAAAATTGCCTGAGCTACCTAA 237
Query 241 ATTCGAAGTTCCCAAGTTGCCGGAGTTCCCTAAACCAGAGTTGCCTAAGTTACCCGAATT 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 ATTCGAAGTTCCCAAGTTGCCGGAGTTCCCTAAACCAGAGTTGCCCAAGTTACCCGAATT 297
Query 301 TCCAAAGCCTGAGTTGCCGAAGATCCCGGAGATTCCAAAGCCAGAGTTGCCAAAGGTCCC 360
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 298 TCCAAAGCCTGAGTTGCCAAAGATCCCGGAGATTCCAAAGCCAGAGTTACCAAAGGTACC 357
Query 361 GGAGATTCCAAAGCCAGAGGAAGCTAAACTGCCAGAGATTCCGAAGCCTGAATTACCCAA 420
||||||||||||||| |||||| ||||||||||||| ||||| |||| |||||| |||||
Sbjct 358 GGAGATTCCAAAGCCTGAGGAAACTAAACTGCCAGATATTCCCAAGCTTGAATTGCCCAA 417
Query 421 GTTTCCCGAAATTCCGAAACCTGAGCTCCCAAAGATCCCAGAGATTCCAAAACCAGAGTT 480
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 418 GTTTCCGGAAATTCCAAAACCTGAGCTCCCAAAGATGCCAGAGATTCCAAAACCTGAGTT 477
Query 481 ACCAAAGGTACCGGAGATTCAGAAGCCGGAGTTACCAAAGGTACCGGAGATTCCGAAGCC 540
||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||
Sbjct 478 ACCAAAGGTACCGGAGATTCAGAAGCCCGAGTTACCAAAAATGCCGGAGATTCCAAAGCC 537
Query 541 AGAGTTGCCGAAGTTTCCAGAGATTCCAAAGCCTGAATTGCCCAAGTTTCCAGAGAATTC 600
|| || || |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 538 TGAATTACCAAAGTTTCCAGAGATTCCAAAGCCTGATTTGCCAAAGTTTCCAGAGAATTC 597
Query 601 AAAGCCTGAGGTGCCTAAGCTGATGGAGACTGAAAAGCCTGAGGCTCCTAAGGTTCCGGA 660
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 598 AAAGCCTGAGGTGCCTAAGCTAATGGAGACTGAAAAGCCTGAGGCTCCTAAGGTGCCAGA 657
Query 661 GATTCCAAAGCCTGAGTTGCCAAAGATGCCGGAAGTTCCCAAGCTTGAGGCTCCTAAGTT 720
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 658 GATTCCAAAGCCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCTCCTAAGGT 717
Query 721 ACCGGAGATTCCAAAA-CCTGAGTTGCCTAAAATTCCGGAG---CCTAAGGTACCGGAGA 776
||| ||||| ||| || || |||||||| ||||| |||||| |||||| | |||||||
Sbjct 718 ACCAGAGAT-CCAGAAGCCGGAGTTGCCCAAAATGCCGGAGTTACCTAAGATGCCGGAGA 776
Query 777 TTCAGAAACCCGAGTTGCCAAAGATGCCGGAAATTCAGAAGCCGGAGT-TACCAAAGATG 835
|||||||||| |||||||||||| |||| ||| ||| |||| ||| | || ||| |
Sbjct 777 TTCAGAAACCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCT-CCTAAGGTA 835
Query 836 CCGGAGATTCAGAAGCCTGAGTTGCCGAAAGTGCCAGAGGTTCCAAAGCCTGAATTGCCA 895
|||||||| |||||||| |||||||| ||| |||| ||| || | ||| || | |
Sbjct 836 CCGGAGATCCAGAAGCCGGAGTTGCCCAAAATGCCGGAG-TT--A---CCT-AA--G--A 884
Query 896 ACGGTTCCGGAGGTTCC-AAAGCCTGAG--GCTCCTAAGTTGCCGGAGGTTCCA-AAGCC 951
| |||||| ||| ||| || ||| || || ||| |||||||| ||| | |||||
Sbjct 885 T-G---CCGGAGATTCAGAAACCC-GAGTTGC-CC-AAGATGCCGGAGATTC-AGAAGCC 936
Query 952 TGAATTGCCAAAAGTGCCGGAGATTC-AGAAGCCTGAACTTCCCAA-GATTCCAGAAATT 1009
||| ||||| || ||||| ||| ||| | ||||| ||| || |||| | ||||||| ||
Sbjct 937 TGAGTTGCCGAAGGTGCCAGAGGTTCCA-AAGCCCGAA-TTGCCAACGGTTCCAGAGGTT 994
Query 1010 CCAAAACCTG---C----A-GTT-CCAGAGATTCCAAAGCCAGAGCTACCGAAGATGCCG 1060
||||| ||| | | ||| ||||||||||||||||| || || |||||||| ||
Sbjct 995 CCAAAGTCTGAGGCTCCTAAGTTTCCAGAGATTCCAAAGCCTGAACTGCCGAAGATTCCA 1054
Query 1061 GAACTTCC 1068
||| ||||
Sbjct 1055 GAAGTTCC 1062
Score = 590 bits (319), Expect = 1e-167
Identities = 780/992 (79%), Gaps = 74/992 (7%)
Strand=Plus/Plus
Query 247 AGTT-CCCAAGTTGCCGGAG-TTCCCTAAA-CCAGAGTTGCCTAAGTTACCCGA-ATTTC 302
|||| || ||| | |||||| || || ||| |||||||| || ||| |||| || | |||
Sbjct 309 AGTTGCCAAAGATCCCGGAGATT-CC-AAAGCCAGAGTTACCAAAGGTACCGGAGA-TTC 365
Query 303 CAAAGCCTGAGTTGCCGAAGA-TCCCGGAGATTCCAAAGCCAGAGTTGCCAAAGGTCCCG 361
||||||||||| | || | | || || ||||| |||| || ||||| ||| | |||
Sbjct 366 CAAAGCCTGAGGAAACTAA-ACTGCCAGATATTCCCAAGCTTGAATTGCCCAAGTTTCCG 424
Query 362 GAGATTCCAAAGCCAGAGGAAGCTAAA-CTGCCAGAGATTCCGAAGCCTGAATTACCCAA 420
|| |||||||| || || | | ||| ||||||||||||| || ||||| ||||| ||
Sbjct 425 GAAATTCCAAAACCTGA-GCTCCCAAAGATGCCAGAGATTCCAAAACCTGAGTTACCAAA 483
Query 421 GTTTCCCGAAATTCCGAAACCTGAGCTCCCAAAGATCCCAGAGATTCCAAAACCAGAGTT 480
| | || || |||| ||| || ||| | ||||| || || ||||||||||| || || ||
Sbjct 484 GGTACCGGAGATTCAGAAGCCCGAGTTACCAAAAATGCCGGAGATTCCAAAGCCTGAATT 543
Query 481 ACCAAAGGTACCGGAGATT-CAGAAGCCGGAGTTACCAAAGGTACCGGAG-ATTCCGAAG 538
||||||| | || |||||| || ||||| || || |||||| | || ||| ||| | |||
Sbjct 544 ACCAAAGTTTCCAGAGATTCCA-AAGCCTGATTTGCCAAAGTTTCCAGAGAATT-CAAAG 601
Query 539 CCAGAGTTGCCGAAGTTTCCAGAGATTCCAAAGCCTGAATTGC-CC-AAGTTTCCAGAGA 596
|| ||| |||| ||| | |||| | |||||||| | || || ||| | ||||||
Sbjct 602 CCTGAGGTGCCTAAGCTAATGGAGACTGAAAAGCCTG-A-GGCTCCTAAGGTGCCAGAG- 658
Query 597 ATT-CAAAGCCTGAGGTGCCTAAGCTG--ATGGAGACTGAAAAGCCTGAGGCTCCTAAGG 653
||| ||||||||||| |||| ||| || | | || | |||| ||||||||||||||
Sbjct 659 ATTCCAAAGCCTGAGTTGCCAAAGTTGCCA-GAAG-TTCCCAAGCTTGAGGCTCCTAAGG 716
Query 654 TTCCGGAGATTCCA-AAGCCTGAGTTG-CCAAAGATGCCGGAAGTT-CCCAAGCTTG-AG 709
| || |||| |||| ||||| |||||| ||||| ||||||| |||| || ||| || |
Sbjct 717 TACCAGAGA-TCCAGAAGCCGGAGTTGCCCAAA-ATGCCGG-AGTTACCTAAG-ATGCCG 772
Query 710 GCTCCTAAGTTACCGGAGATT-CCAAA---ACCTG-AGTTGCCTAAAATTCCGGAGCCTA 764
| | || ||| ||| || ||||| || | |||| || || || || ||||
Sbjct 773 GAGATTCAGAAACCTGAG-TTGCCAAAGTTGCCAGAAGTT-CCCAAGCTTGAGGCTCCTA 830
Query 765 AGGTACCGGAGATTCAGAA-----A------C------CC-GAGTTGCCAAAGATGCCGG 806
||||||||||||| ||||| | | || ||||| || ||||||||||
Sbjct 831 AGGTACCGGAGATCCAGAAGCCGGAGTTGCCCAAAATGCCGGAGTTACCTAAGATGCCGG 890
Query 807 AAATTCAGAAGCCGGAGTTACCAAAGATGCCGGAGATTCAGAAGCCTGAGTTGCCGAAAG 866
| |||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 891 AGATTCAGAAACCCGAGTTGCCCAAGATGCCGGAGATTCAGAAGCCTGAGTTGCCGAAGG 950
Query 867 TGCCAGAGGTTCCAAAGCCTGAATTGCCAACGGTTCCGGAGGTTCCAAAGCCTGAGGCTC 926
||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 951 TGCCAGAGGTTCCAAAGCCCGAATTGCCAACGGTTCCAGAGGTTCCAAAGTCTGAGGCTC 1010
Query 927 CTAAGTTGCCGGAGGTTCCAAAGCCTGAATTGCCAAAAG-TGCC-GGAGATT-CAGAAGC 983
||||||| || ||| |||||||||||||| |||| ||| | || | || || || || |
Sbjct 1011 CTAAGTTTCCAGAGATTCCAAAGCCTGAACTGCC-GAAGATTCCAGAAG-TTCCA-AAAC 1067
Query 984 CTGAACTTCCCAAGATTCCAGAAATTCCAAAACCTGCAGTTCCAGAGATTCCAAAGCCAG 1043
||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1068 CTGAACTGCCCAAGGTTCCAGAAATTACAAAACCTGCAGTTCCAGAGATTCCAAAGCCAG 1127
Query 1044 AGCTACCGAAGATGCCGGAACTTCCCAAGTTGCCGGAATTCCCAAAAGTTCCCGGAACTC 1103
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AGCTACCGACGATGCCTCAACTTCCCAAGTTGCCGGAATTCCCAAAAGTTCCCGGAACTC 1187
Query 1104 CTTAAGCGTTATTGAACCAGAAGAAGGCCCAACTACTTTGAAGCCCATCACACGATCTTA 1163
|||||||| | | || ||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1188 CTTAAGCG--A---A----GA-GAAGGCCCAGCTACTTTGAAGCCCATCCCACAATCTTA 1237
Query 1164 AAGTACCATTTTACCCTTACACTATTTGTCTA 1195
||||||| ||||||| ||| || |||||||||
Sbjct 1238 AAGTACCGTTTTACCGTTATACCATTTGTCTA 1269
Score = 215 bits (116), Expect = 1e-54
Identities = 475/637 (75%), Gaps = 70/637 (11%)
Strand=Plus/Plus
Query 390 TGCCAGAGATT-CCGAAGCCTGAATTACCCAAGTTTCCCGAAATTCCGAAA-CCTGAGCT 447
|||| ||| || || || || || || |||||||| |||||| |||| ||| |||||| |
Sbjct 255 TGCCGGAG-TTCCCTAAACCAGAGTTGCCCAAGTTACCCGAATTTCC-AAAGCCTGAGTT 312
Query 448 CCCAAAGATCCCAGAGATTCCAAAACCAGAGTTACCAAAGGTACCGGAGATTC-AGAAGC 506
||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 313 GCCAAAGATCCCGGAGATTCCAAAGCCAGAGTTACCAAAGGTACCGGAGATTCCA-AAGC 371
Query 507 CGGAGTTACC-AAAGGTACCGGAGATTCCGAAGCCAGAGTTGCCGAAGTTTCCAGAGATT 565
| ||| | | ||| | || || ||||| |||| || ||||| |||||||| || |||
Sbjct 372 CTGAGGAAACTAAAC-TGCCAGATATTCCCAAGCTTGAATTGCCCAAGTTTCCGGAAATT 430
Query 566 CCAAAGCCTGAATTGCCCAA-GTTTCCAGAGAATTC-AAAGCCTGAGGTGCCTAAGCTGA 623
||||| ||||| | ||||| | | ||||||| ||| ||| |||||| | || ||| | |
Sbjct 431 CCAAAACCTGAGCT-CCCAAAGATGCCAGAGA-TTCCAAAACCTGAGTTACCAAAGGT-A 487
Query 624 T-GGAGACTGAAAAGCCTGAGGCT-CCTAAGGTTCCGGAGATTCCAAAGCCTGAGTTGCC 681
||||| | | ||||| ||| | || || | |||||||||||||||||||| || ||
Sbjct 488 CCGGAGATTCAGAAGCCCGAGT-TACCAAAAATGCCGGAGATTCCAAAGCCTGAATTACC 546
Query 682 AAAGATGCCGGA-AGTTCCCAAGCTTGAGGCT-CCTAAGTTACCGGAGA-TTCCAAAACC 738
|||| | || || | |||| |||| ||| | || ||||| || |||| ||| ||| ||
Sbjct 547 AAAGTTTCCAGAGA-TTCCAAAGCCTGATT-TGCCAAAGTTTCCAGAGAATTC-AAAGCC 603
Query 739 TGAGTTGCCTAA---AAT------T------CCGGAG-C-C-TAAGGTACCGGAGATTCA 780
|||| ||||||| ||| | || ||| | | |||||| || |||||||
Sbjct 604 TGAGGTGCCTAAGCTAATGGAGACTGAAAAGCCTGAGGCTCCTAAGGTGCCAGAGATTCC 663
Query 781 GAAACCC-GAGTTGCCAAAGATGCCGGAAATTCAGAAGCCGGAGT-TACCAAAGATGCCG 838
||| || |||||||||||| |||| ||| ||| |||| ||| | || ||| | ||
Sbjct 664 -AAAGCCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCT-CCTAAGGTACCA 721
Query 839 GAGATTCAGAAGCCTGAGTTGCCGAAAGTGCCAGAGGTT-CC-AA-A-GCCTGA-ATTGC 893
||||| |||||||| |||||||| ||| |||| ||| || || || | ||| || ||| |
Sbjct 722 GAGATCCAGAAGCCGGAGTTGCCCAAAATGCCGGAG-TTACCTAAGATGCCGGAGATT-C 779
Query 894 C-AA-C--G-GTT-CC---G--G--AG--GTTCCAAAGCCTGAGGCTCCTAAGTTGCCGG 938
|| | | ||| || | | || ||||| |||| ||||||||||||| | ||||
Sbjct 780 AGAAACCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCTCCTAAGGTACCGG 839
Query 939 AGGTTCCA-AAGCCTGAATTGCC-AAAAGTGCCGGAG 973
|| | ||| ||||| || ||||| |||| ||||||||
Sbjct 840 AGAT-CCAGAAGCCGGAGTTGCCCAAAA-TGCCGGAG 874
> AT5G09520.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:2958292-2958856 REVERSE LENGTH=565
Length=565
Score = 209 bits (113), Expect = 5e-53
Identities = 215/263 (82%), Gaps = 11/263 (4%)
Strand=Plus/Plus
Query 93 TGAAGCAGAGTCTCTCTGCTGCTCTTCTCTCATCACCACTTCTGATCATATGTCTTATTG 152
||||| ||||| |||||||| |||| || | |||||| |||||||||||||||||||||
Sbjct 8 TGAAGAAGAGTTTCTCTGCTTCTCTACT-T--TCACCATTTCTGATCATATGTCTTATTG 64
Query 153 CATTGCTCGCTGATCCGGTTTCAGTCGGTGCTCGCCGGTTATTGGAGGATCCTAAACCGG 212
||||||| ||| |||||| || || || |||||||||||||||||||| |||||||| |
Sbjct 65 CATTGCTTTCTGTTCCGGTATCCGTTGGAGCTCGCCGGTTATTGGAGGAACCTAAACCAG 124
Query 213 AGATACCAAAATTGCCTGAGCTACCTAAATTC-GAAGTTCCCAA-GTTGCCGGAGTTCCC 270
||||||| | ||| || |||||||||||| | || | | |||| ||| || || || ||
Sbjct 125 AGATACCGACATTTCCGGAGCTACCTAAAC-CAGA-GATGCCAAAGTTACCCGAATTTCC 182
Query 271 TAAACCAGAGTTGCCTAAGTTACCCGA-ATTTCCAAAGCCTGAGTTGCCGAAGATCCCGG 329
|| | |||||||||||||||||| || ||| ||||| || ||| |||| ||| | ||||
Sbjct 183 GAAGCTAGAGTTGCCTAAGTTACCTGAGATT-CCAAAACCAGAGATGCCTAAGTTACCGG 241
Query 330 AGATTCCA-AAGCCAGAGTTGCC 351
|||||| | ||||| || |||||
Sbjct 242 AGATTC-AGAAGCCTGAATTGCC 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5