BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487771
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09540.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1096 0.0
AT5G64360.3 | Symbols: | Chaperone DnaJ-domain superfamily pro... 340 1e-92
> AT5G09540.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:2962216-2963264 REVERSE LENGTH=1049
Length=1049
Score = 1096 bits (593), Expect = 0.0
Identities = 784/871 (90%), Gaps = 34/871 (4%)
Strand=Plus/Plus
Query 1 ATGGTAA--G-CGGCGGCGGCGATAATAACAGAGCGGAGGCGGATCAGTGGCTTGCTACA 57
||||||| | |||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 1 ATGGTAAGCGACGGCGGCGGCGAGAATAACAGAGCGGAGGCAGATCAGTTGCTTGCTACA 60
Query 58 TCGGAGAAGCTCTTGGCCTCAAGTGACTTTCATGGAGCTAAGACATTTGCGATCCGTGCA 117
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCGGAGAAGCTCTTGGCTTCAAGTGACTTTCATGGAGCAAAGACATTTGCGATCCGTGCA 120
Query 118 TGCGAAGCTGACCCGTCTCGAACAGACGCAGCGGACTATATCCTCGCCATCGCCGACACT 177
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TGCGAAGCTGACCCATCCCGAACAGACGCAGCTGACTATATCCTCGCCATCGCCGACACT 180
Query 178 CTCCTCGCCGGAGAAACTACCATCGGAGATTCGAAAGTAACAGACTGGTACGCGGTACTT 237
|||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 181 CTCCTCGCCGGAGAAACTACAATCGGAGATTCCAAAGTACCAGACTGGTACGCGGTACTT 240
Query 238 CGACTCAGCCGCCTAACTCGAAACCCC-GAACACGTCGCGACTCAGTACCGTAGACTCAC 296
||| ||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 241 CGAATCAGCCGCCTAACCC-AAAGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCAC 299
Query 297 TCTTCTCCTCAATCTCAATGTCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAGCTAGT 356
|||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 300 TCTTCTCCTCAAACTCAATATCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGT 359
Query 357 CTCCGATGCTTGGT-TAGTCCTCTCTGATCCTCCAAGGAAATCAATGTATGATCGAGAGT 415
|||||||||||||| | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 360 CTCCGATGCTTGGTAT-GTCCTCTCTGATCCTCCAAGGAAATCAATTTACGATCGAGAGT 418
Query 416 TTAAGCTGAGTCAATTTGGTCAACCTTATAGTTATAGCCAATCAGAGCAATTTCAAGATT 475
| ||||||||||| ||||||| | | | | || ||||||||||||
Sbjct 419 TGCAGCTGAGTCAAACTGGTCAATC-----G-----G--A----GA--AATTTCAAGATT 460
Query 476 CGCCATTGCAGAGCCAAGGTGAGACCATGGAGAATCCTACGGCTACGAGCTTCTGGACTG 535
|||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||||| |
Sbjct 461 CGCCATTGCAGAGCCAAGCTGAGACCTTGGAGAATCCTACAGCTACAAGCTTTTGGACCG 520
Query 536 CTTGTCCTTATTGTTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGA 595
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTTGTCCTTACTGCTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGA 580
Query 596 GGTGTCAGCAATGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCAGTGGAGA 655
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 581 GGTGTCAGCAGTGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCTGTGGAGA 640
Query 656 GTAATGGTGAAGGCGTTTACGTTTG-TTCTTGGGCTATGTTCCCTGTAGGGTTATCAAGT 714
|||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||
Sbjct 641 GTAATGGTGAAGGCGTTTAC-TTTGGTTCTTGGGCTATGTTCCCTGTAGGATTAACAAGT 699
Query 715 CATGCTAAAACCTCTAATTGGTCGCCAATTTCACATCTTTCCGTCTGCACAGGGCAAAGA 774
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 700 CATCCTAACACCTCTAATTGGTCGCCAATCTCACATCTTTCCGTCTGCACAGGGCAAAGT 759
Query 775 TCATGTGATCAGCAATCGAAGGCTCTTCCACGAAACG--ATGATGCTGATGATGTTGACA 832
|||| |||||||||||| || | || | | || | || | |||||||||||||
Sbjct 760 TCATCTGATCAGCAATCAAA---T-TTGAAGGCTACTCCAAGAAAC-GATGATGTTGACA 814
Query 833 TATATATTACAATTTCTGATGATGATTAAAG 863
|||||||| ||||||||||||||||||||||
Sbjct 815 TATATATTGCAATTTCTGATGATGATTAAAG 845
> AT5G64360.3 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:25737071-25738667 REVERSE LENGTH=1597
Length=1597
Score = 340 bits (184), Expect = 1e-92
Identities = 347/424 (82%), Gaps = 18/424 (4%)
Strand=Plus/Plus
Query 24 TAACAGAGCGGAGGCGGATCAGTGGCTTGCT-ACATCGGAGAAGC-TCTTGGCCTCAAGT 81
|||||||| |||||||||||||||||||| | ||||||||||||| || | || || |||
Sbjct 104 TAACAGAGTGGAGGCGGATCAGTGGCTTG-TAACATCGGAGAAGCTTC-TAGCGTCTAGT 161
Query 82 GACT-TTCATGGAGCTAAGACATTTGCGATCCGTGCATGCGAAGCTGACCCGTCTCGAAC 140
|| | |||| ||||| ||||||||||||||||| |||||||||||||||||| | ||| |
Sbjct 162 GA-TCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGACCCGAGC 220
Query 141 AGACGCAGCGGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTAC-C 198
||| || || ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| |
Sbjct 221 AGAAGCTGCAGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-CGT 278
Query 199 ATCGGAGATTCGAAAGTAACAGACTGGTACGCGGTACTTCGACTCAGCCGCCTAACTCGA 258
| || ||||| || | ||||||||||||| || || |||||| | || || ||| |
Sbjct 279 TTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCTCAA 338
Query 259 AACCCCGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAATC-T-CAATG 316
||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 339 AACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT- 397
Query 317 TCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAGCTAGTCTCCGATGCTTGGTTAGTCC 376
| |||||||| || |||||||||| ||| ||||| | ||||||||||||||||| || |
Sbjct 398 T-AATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTCCGATGCTTGGTTCGTTC 456
Query 377 TCTCTGATCC-TCCAAGGAAATCAATGTATGATCGAGAGTTT-AAGCTGAGTCAATTTGG 434
|||||||||| | |||| |||||| | || || ||||| || || || |||||| | ||
Sbjct 457 TCTCTGATCCGTTCAAG-AAATCATTCTACGACCGAGAATTGCAA-CTTAGTCAACTCGG 514
Query 435 TCAA 438
||||
Sbjct 515 TCAA 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5