BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487772
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09550.1 | Symbols: | GDP dissociation inhibitor family pro... 2423 0.0
> AT5G09550.1 | Symbols: | GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein | chr5:2963777-2966727
FORWARD LENGTH=1673
Length=1673
Score = 2423 bits (1312), Expect = 0.0
Identities = 1488/1570 (95%), Gaps = 23/1570 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaGTCTATGAGAGATCGATGAAGAATT-AA-A-GATCGATAACGTAGATAGAG 57
||| ||||||||||| |||||||||||||| ||| || | |||| |||||| ||||||||
Sbjct 1 AAAGAAAAAGTCTATTAGAGATCGATGAAGGATTAAAGACGATCAATAACGGAGATAGAG 60
Query 58 ATCGATTACAATAATGGATGAAGAGTATGATGTGATTGTTCTTGGGACTGGTCTTAAGGA 117
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATCGATTACAATAATGGATGAAGAGTATGATGTGATTGTCCTTGGGACTGGTCTTAAGGA 120
Query 118 GTGTATCCTTAGTGGCCTTCTCTCTGTCGATGGCCTCAAGGTACTACATATGGATAGAAA 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGTATCCTTAGTGGCCTCCTCTCTGTCGATGGCCTCAAGGTACTACATATGGATAGAAA 180
Query 178 CGACTACTATGGAGGAGAATCATCCTCTCTTAACCTCACTCAGCTATGGAAGCGTTTCAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CGACTACTATGGAGGAGAATCATCCTCTCTTAACCTCACTCAGCTATGGAAGCGTTTTAG 240
Query 238 GGGAAGTGACACTCCTCAAGAAAATCTCGGAGCAAGCAGAGAATACAATGTTGATATGAT 297
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 GGGAAGTGACACTCCTGAAGAAAATCTTGGAGCAAGCAGAGAATACAATGTCGATATGAT 300
Query 298 CCCAAAGTTTATAATGGCTAATGGACTCCTTGTTCAAACCCTAATCCACACCGATGTTAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCCAAAGTTTATAATGGCTAATGGACTCCTTGTTCAAACCCTAATCCACACCGATGTTAC 360
Query 358 AAAGTATCTTAACTTTAAGGCTGTTGATGGTAGCTTTGTTTACAAGAAAGGCAAGATCTA 417
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 361 CAAGTATCTTAACTTTAAGGCCGTTGATGGTAGCTTTGTCTACAAGAAAGGCAAGATCTA 420
Query 418 CAAAGTCCCAGCCACTGATGTAGAAGCCCTGAAATCGCCATTGATGGGTCTTTTCGAGAA 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAAGTCCCAGCCACTGATGTGGAAGCCCTGAAATCGCCATTGATGGGTCTTTTCGAGAA 480
Query 478 GCGACGTGCGAGAAAGTTCTTTATCTACGTGCAAGACTATGATGAGAAGGATCCCAAGTC 537
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 481 GCGACGTGCGAGAAAGTTCTTTATCTATGTGCAAGACTATGATGAGAAGGATCCTAAGTC 540
Query 538 TCACGAAGGACTTGACTTAAGCAAAGTCACTGCTAGAGAGATCATCTCAAAGTATGGACT 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCACGAAGGACTTGACCTAAGCAAAGTCACTGCTAGAGAGATCATCTCAAAGTATGGACT 600
Query 598 TGAAGATGACACAATCGACTTCATAGGGCATGCCTTAGCGCTTCACAACGACGATGACTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 TGAAGATGACACAATCGACTTCATAGGGCATGCCTTAGCGCTTCACAACGATGATGACTA 660
Query 658 CTTGGATCAACCCGCCATTGATTTTGTTAAGAGAATCAAGCTCTACGCGGAGTCTTTGGC 717
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 661 CTTGGATCAACCCGCCATTGATTTTGTTAAGAGAATCAAGCTCTATGCGGAGTCTCTGGC 720
Query 718 TCGATTCCAAGGAGGATCTCCTTACATCTATCCATTGTACGGTCTAGGAGAGTTGCCACA 777
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 721 TCGATTCCAAGGAGGATCCCCTTACATCTATCCGTTGTACGGTCTAGGAGAGCTGCCACA 780
Query 778 GGCTTTTGCACGTTTAAGCGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCTGAATG 837
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 GGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATG 840
Query 838 CAAGGTAGAGTTTGATGGTTCTGGAAAAGCTATTGGTGTCACATCTGCAGGAGAGACTGC 897
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 841 CAAGGTAGAGTTTGATGGTTCTGGAAAAGCTATTGGTGTCACTTCTGCAGGAGAAACTGC 900
Query 898 TAAATGCAAGAAAGTTGTCTGTGATCCTTCTTACCTATC-CAACAAGGTAAAGAAAGTTG 956
|||||||||||||||||| ||||||||||||||||| || || ||||| ||||||||||
Sbjct 901 TAAATGCAAGAAAGTTGTATGTGATCCTTCTTACCTGTCTGAA-AAGGTTAAGAAAGTTG 959
Query 957 GGAAAGTGACTCGAGCGGTGTGTATAATGAGCCATCCTATTCCAGACACCAACGACGCTC 1016
| ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 960 GAAAAGTAACTCGAGCGGTGTGTATAATGAGCCATCCTATTCCAGACACAAATGATGCTC 1019
Query 1017 ACTCGGTTCAAATCATTCTTCCTCAGAAGCAACTCGGTCGCAAATCAGACATGTACTTGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTCGGTTCAAATCATTCTTCCTCAGAAGCAACTCGGTCGCAAATCAGACATGTACTTGT 1079
Query 1077 TCTGTTGCTCATACGCTCACAATGTGGCACCAAAGGGCAAATACATAGCTTTTGTCTCTG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCTGTTGCTCATACGCTCACAATGTGGCACCAAAGGGCAAATACATAGCTTTTGTCTCTG 1139
Query 1137 CAGAAGCTGAAACTGACAATCCAGAGGAGGAGCTTAAACCTGGAATCGAATTGCTTGGAT 1196
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1140 CAGAAGCTGAAACTGACAATCCAGAAGAGGAGCTTAAACCCGGAATCGAATTGCTTGGAC 1199
Query 1197 CTATTGATGAGATCTTCTATCATTCTTATGAAACATACGTTCCAACCAATAATCAAGAAG 1256
||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1200 CTACTGATGAGATCTTCTATCATTCTTATGACACATACGTTCCAACCAATATTCAAGAAG 1259
Query 1257 AAGATAACTGTTTCATCTCTGCTACTTATGATGCAACGACACATTTTGAGAGTACTGTTG 1316
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct 1260 AAGATAACTGTTTCATCTCTGCTACTTACGATGCAACAACACATTTCGAGAGTACAGTTG 1319
Query 1317 TGGATGTACTTGACATGTACACCAAGATCACTGGAAAGACTCTTGATTTGTCTGTGGACT 1376
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TAGATGTACTTGACATGTACACCAAGATCACTGGAAAGACTCTTGATTTGTCTGTGGACT 1379
Query 1377 TAAGTGCTGCAAGTGCTGCTGCAGAAAATTGATAA-TT---TT---C-----GCTGAGTG 1424
| ||||||||||||||||||||||| ||||||||| || || | ||||||||
Sbjct 1380 TGAGTGCTGCAAGTGCTGCTGCAGAGAATTGATAACTTGCGTTTTTCCTTCCGCTGAGTG 1439
Query 1425 -TTCTTAAATTGCAAGTGATTGTTTATTTTTCTATTGGATAAA-ATTGGATACAGTTCAA 1482
|| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1440 GTT-TTAAATTGCAAGTGATTGTTTATTTTTCTATTGGATAAAGAC---ATAAAGTTCAA 1495
Query 1483 AGTAACAGAAGTTTACGTTTTTGTTCATCTTACTTTAAACACTGGTTGATTTTGCTATAA 1542
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1496 AGTAACACAAGTTTGCGTTTTTGTTCATCTTACTTAAAACACTGGTTGATTTTGCTTTCA 1555
Query 1543 TTTGTACTTT 1552
|||||| |||
Sbjct 1556 TTTGTATTTT 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5