BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487773
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09590.1 | Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70... 3646 0.0
AT4G32208.1 | Symbols: | heat shock protein 70 (Hsp 70) family... 850 0.0
> AT5G09590.1 | Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70
2 | chr5:2975548-2978750 FORWARD LENGTH=2464
Length=2464
Score = 3646 bits (1974), Expect = 0.0
Identities = 2185/2288 (95%), Gaps = 10/2288 (0%)
Strand=Plus/Plus
Query 123 TTGAATTTCGAAACCATGGCTACCGCAGCTCTCCTCCGCTCTATTCGACGCCGTGAAGTC 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TTGAATTTCGAAACCATGGCTACCGCAGCTCTCCTCCGCTCTATTCGACGCCGTGAAGTC 218
Query 183 GTTTCCGCTCCTTTCTCAGCTTACAGATGCCTTTCGAGCAGCGGGAAAACATCATTGAAC 242
|||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 219 GTTTCCTCTCCTTTCTCAGCTTACAGATGCCTTTCAAGCAGTGGGAAAGCATCATTGAAC 278
Query 243 AGTTCGTATCTCGGTCAGAATTTGAGAAGCTTTTCCAGAGCATTTAGCTCGAAGCCTGCT 302
||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 279 AGTTCCTATCTGGGTCAGAATTTTAGAAGCTTTTCCAGAGCCTTTAGCTCGAAGCCTGCT 338
Query 303 GGGAATGATGTCATTGGTATTGATTTGGGTACTACTAATTCCTGTGTTGCGGTCATGGAG 362
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 339 GGAAACGATGTCATTGGTATTGATTTGGGTACTACTAATTCATGTGTTGCCGTCATGGAG 398
Query 363 GGAAAGAATCCGAAAGTCATTGAAAATGCTGAAGGTGCTCGAACCACTCCATCAGTTGTA 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GGGAAGAATCCGAAAGTCATTGAAAATGCTGAAGGTGCTCGAACCACTCCATCAGTTGTA 458
Query 423 GCGTTCAACTCAAAAGGAGAACTTCTTGTGGGTACACCAGCCAAGCGACAAGCTGTCACT 482
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GCATTCAACACGAAAGGAGAACTTCTTGTGGGTACACCAGCCAAGCGACAAGCTGTCACT 518
Query 483 AATCCTACAAACACAGTATCTGGAACCAAACGTTTGATTGGGAGAAAGTTCGACGATCCA 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 519 AATCCTACAAACACAGTATCTGGAACGAAACGTTTGATTGGGAGAAAGTTCGACGATCCA 578
Query 543 CAAACACAGAAAGAAATGAAGATGGTGCCTTACAAGATTGTGCGTGCACCTAATGGCGAT 602
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CAAACTCAGAAAGAAATGAAGATGGTGCCTTACAAGATTGTGCGTGCACCTAATGGCGAT 638
Query 603 GCTTGGGTTGAAGCCAATGGTCAGCAGTATTCTCCTAGTCAGATTGGAGCGTTTATTTTG 662
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 639 GCGTGGGTTGAAGCCAATGGTCAGCAGTATTCTCCTAGTCAGATTGGAGCGTTTATCTTG 698
Query 663 ACTAAGATGAAAGAGACAGCCGAAGCTTACCTTGGAAAATCTGTCACCAAAGCTGTTGTC 722
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 699 ACGAAGATGAAAGAGACGGCCGAAGCTTACCTTGGAAAATCTGTCACGAAAGCTGTTGTC 758
Query 723 ACTGTTCCAGCTTACTTTAATGATGCTCAGAGGCAAGCAACAAAGGATGCTGGTAGAATT 782
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 759 ACTGTTCCAGCTTACTTTAATGATGCTCAGAGACAAGCAACAAAAGATGCTGGTAGAATT 818
Query 783 GCTGGTCTTGATGTCGAGAGAATCATAAATGAGCCGACTGCTGCTGCTCTTTCCTATGGA 842
|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 819 GCTGGTCTTGATGTTGAGAGAATCATAAATGAACCGACGGCTGCTGCTCTGTCCTATGGA 878
Query 843 ATGACCAATAAGGAGGGTTTGATTGCTGTGTTTGATCTTGGTGGTGGGACATTTGATGTA 902
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 ATGACCAACAAGGAGGGGTTGATTGCTGTGTTTGATCTTGGTGGTGGGACATTTGATGTA 938
Query 903 TCTGTTTTGGAGATTTCTAATGGGGTATTCGAGGTCAAAGCCACCAATGGTGATACCTTC 962
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 939 TCTGTTTTGGAGATTTCTAATGGGGTATTCGAGGTGAAAGCCACCAATGGTGATACCTTC 998
Query 963 TTGGGAGGAGAGGATTTCGATAATGCTCTGCTAGACTTCTTGGTAAAGGAGTTCAAGACC 1022
|||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 999 TTGGGAGGTGAGGATTTCGACAATGCTCTGCTAGACTTCTTGGTTAATGAGTTCAAGACC 1058
Query 1023 ACTGAGGGGATAGATCTCA-CCAAAGACAGACTTGCTCTGCAGAGGCTTCGAGAAGCAGC 1081
|||||||| ||||| || | ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1059 ACTGAGGGAATAGACCT-AGCCAAAGACAGACTTGCTCTGCAGAGGCTTAGAGAAGCCGC 1117
Query 1082 TGAGAAAGCGAAGATCGAACTATCATCTACTTCTCAAACAGAAATTAATCTCCCATTTAT 1141
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1118 TGAGAAAGCGAAGATTGAACTGTCATCTACTTCTCAAACTGAAATTAATCTCCCATTTAT 1177
Query 1142 CACAGCTGATGCATCTGGAGCAAAGCATTTCAACATCACCCTAACAAGGTCTAGGTTTGA 1201
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1178 CACAGCCGATGCATCTGGAGCAAAGCATTTCAACATCACCCTAACAAGGTCAAGGTTTGA 1237
Query 1202 GACTCTGGTGAATCACTTGATTGAGAGGACCCGCGATCCTTGCAAGAACTGTCTCAAGGA 1261
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AACTCTTGTGAATCACTTGATTGAGAGGACCCGCGATCCTTGCAAGAACTGTCTCAAGGA 1297
Query 1262 TGCTGGTATTAGTGCCAAGGAAGTTGATGAGGTTCTTCTAGTTGGAGGAATGACTCGTGT 1321
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1298 TGCTGGTATAAGTGCTAAGGAAGTTGATGAGGTTCTTCTAGTTGGAGGAATGACGCGTGT 1357
Query 1322 CCCCAAGGTACAATCTGTTGTCGCAGAGATCTTTGGAAAGAGTCCAAGCAAAGGTGTCAA 1381
||||||||| || ||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 1358 CCCCAAGGTTCAGTCTATTGTTGCGGAGATCTTTGGAAAGAGTCCAAGCAAAGGTGTCAA 1417
Query 1382 TCCTGATGAGGCTGTTGCTATGGGAGCTGCACTTCAAGGTGGTATCCTCCGCGGTGATGT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 TCCTGATGAGGCTGTTGCTATGGGAGCTGCACTTCAAGGTGGTATCCTCCGCGGTGATGT 1477
Query 1442 TAAAGAATTGTTGCTTCTGGATGTCACACCTCTATCGCTCGGTATTGAAACACTTGGTGG 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CAAAGAATTGTTGCTTCTGGATGTCACACCTCTATCGCTCGGTATTGAAACACTTGGTGG 1537
Query 1502 TGTCTTTACAAGACTGATTACCCGAAACACAACCATCCCCACAAAGAAGAGTCAGGTGTT 1561
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1538 TGTCTTTACGAGACTGATCACCCGAAATACAACCATCCCCACAAAGAAGAGTCAGGTGTT 1597
Query 1562 CTCAACTGCAGCCGATAATCAGACTCAAGTTGGGATCAGGGTACTTCAAGGGGAGCGTGA 1621
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1598 CTCAACTGCAGCCGATAATCAGACTCAAGTTGGGATCAGGGTGCTTCAAGGTGAGCGTGA 1657
Query 1622 AATGGCATCAGACAACAAGCTCTTGGGAGAATTTGATCTAGTTGGCATTCCACCATCTCC 1681
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AATGGCAACAGACAACAAGCTCTTGGGAGAATTTGATCTAGTTGGCATTCCACCATCTCC 1717
Query 1682 AAGAGGAATCCCTCAGATCGAAGTGACATTTGACATTGATGCCAATGGCATTGTCACTGT 1741
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 AAGAGGAGTCCCTCAGATCGAAGTGACATTTGACATTGATGCCAATGGCATTGTCACTGT 1777
Query 1742 TTCCGCCAAGGACAAGACGACTGGGAAAGAACAACAGATCACAATCCGATCCTCCGGTGG 1801
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 1778 TTCCGCCAAGGACAAGACGACTGGTAAAGTACAACAGATCACAATCCGATCCTCTGGTGG 1837
Query 1802 GCTCTCAGAGGATGATATCCAGAAGATGGTGAGAGAAGCAGAGTTGCATGCTCAGAAAGA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 GCTCTCAGAGGATGATATCCAGAAGATGGTGAGAGAAGCAGAGTTGCATGCTCAGAAAGA 1897
Query 1862 CAAAGAAAGAAAAGAATTGATCGACACCAAGAACACAGCTGACACAACAATTTACAGCAT 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 CAAAGAAAGAAAAGAATTGATCGACACCAAGAACACAGCTGACACAACAATTTACAGCAT 1957
Query 1922 AGAGAAGAGTCTTGGTGAATACAGAGAGAAGATCCCAAGTGAAATCGCCAAGGAGATAGA 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1958 AGAGAAGAGTCTTGGTGAATACAGAGAGAAGATCCCAAGTGAAATCGCCAAGGAGATTGA 2017
Query 1982 AGATGCTGTGGCGGATCTAAGGAGCGCTTCGTCTGGGGATGATCTCAATGAGATCAAGGC 2041
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2018 AGATGCTGTGGCAGATCTAAGGAGCGCTTCCTCTGGGGATGATCTCAACGAGATCAAGGC 2077
Query 2042 CAAGATCGATGCTGCAAACAAAGCTGTTTCTAAGATTGGAGAGCACATGTCAGGTGGTTC 2101
|||||| || || |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2078 CAAGATTGAGGCGGCAAACAAAGCTGTTTCTAAGATTGGGGAGCACATGTCTGGTGGTTC 2137
Query 2102 TGGTGGAGGCTCTGCACCAGGAGGAGGAGGATCTCAGGGAGGCAGTGAACAAGCTCAAGA 2161
|||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||
Sbjct 2138 TGGTGGAGGCTCTGCACCAGGAGGAGGA---TCTGAGGGAGGCAGTGATCAAGCTCCAGA 2194
Query 2162 GGCAGAGTATGAGGAAGTGAAAAAGTGAAGAGATTTCGTAAATTCTTGCCACTTGGGTTT 2221
|||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2195 AGCAGAGTACGAGGAAGTGAAAAAGTGAGGAGATTTGGTAAATTCTTGCCACTTGGGTTT 2254
Query 2222 TAAGAGATTAGGTT-AGATCATGGTGGGTTCTATGCCCAAGAAACTTTTGCCTTT-AGAA 2279
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 2255 TAAGAGATTAGGTTTAGATCATGGTGGGTTCTATGTCCAAGGAACTTTTGCCTTTTAGAA 2314
Query 2280 GAGCCAGCAATGGATCTGTTTCTGGAATAAGCTTTTGTCAGGGAACTGAACTTAATGTTT 2339
| | |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2315 CAACGAGCAGTGGATATGTTTCTGGAATAAGCTTTTGTCAGGGAACTAAACTTAATGTTT 2374
Query 2340 CTCTGCTAAAAA-CCTTTGTTATGTAATGTGAGATGGTTAAGGAGAAGAAGTTTACAAGA 2398
|||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||| |
Sbjct 2375 CTCTGCTAAAAAACCTTTGTTATGTAATGTGA--TGGTTAAAGAGAAGAAGTTTTCAAAA 2432
Query 2399 TTTTGTCA 2406
||||||||
Sbjct 2433 TTTTGTCA 2440
Score = 204 bits (110), Expect = 4e-51
Identities = 125/132 (95%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 1 CGTCGTCGACGTCGAGAAGTATCACCATCTAGAACCTTCCCTCAACCTCTAGAAAACAAC 60
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2 CGTCGTCGATGTCGAGAATTATCACCATCTAGAATCTTCCCTCAACCTCTAGAAAACAAC 61
Query 61 TTTCGTA-CCTTCAAAACCCCTAAACCCTAACTTTTGCACAGACGCAATTTCATCGCATC 119
||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 62 TTTCGTATCCTTCAAAAACCCTAAACCCTAGCTTTTGCACAGACGCAATTTCATCGCATC 121
Query 120 ATTTTG-AATTT 130
|||||| |||||
Sbjct 122 ATTTTGCAATTT 133
> AT4G32208.1 | Symbols: | heat shock protein 70 (Hsp 70) family
protein | chr4:15558527-15559650 REVERSE LENGTH=688
Length=688
Score = 850 bits (460), Expect = 0.0
Identities = 544/583 (93%), Gaps = 12/583 (2%)
Strand=Plus/Plus
Query 1827 ATGGTGAGAGAAGCAGAGTTGCATGCTCAGAAAGACAAAGAAAGAAAAGAATTGATCGAC 1886
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 107 ATGGTGAGAGAAGCAGAGTTGCATGCTCAGAAAGAC----AAAGAAAAGAATTGATCGAC 162
Query 1887 ACCAAGAACACAGCTGACACAACAATTTACAGCATAGAGAAGAGTCTTGGTGAATACAGA 1946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 ACCAAGAACACAGCTGACACAACAATTTACAGCATAGAGAAGAGTCTTGGTGAATACAGA 222
Query 1947 GAGAAGATCCCAAGTGAAATCGCCAAGGAGATAGAAGATGCTGTGGCGGATCTAAGGAGC 2006
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 223 GAGAAGATCCCAAGTGAAATCGCCAAGGAGATTGAAGATGCTGTGGCAGATCTAAGGAGC 282
Query 2007 GCTTCGTCTGGGGATGATCTCAATGAGATCAAGGCCAAGATCGATGCTGCAAACAAAGCT 2066
||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 283 GCTTCCTCTGGGGATGATCTCAACGAGATCAAGGCCAAGATTGAGGCGGCAAACAAAGCT 342
Query 2067 GTTTCTAAGATTGGAGAGCACATGTCAGGTGGTTCTGGTGGAGGCTCTGCACCAGGAGGA 2126
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 343 GTTTCTAAGATTGGGGAGCACATGTCTGGTGGTTCTGGTGGAGGCTCTGCACCAGGAGGA 402
Query 2127 GGAGGATCTCAGGGAGGCAGTGAACAAGCTCAAGAGGCAGAGTATGAGGAAGTGAAAAAG 2186
||| ||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 403 GGA---TCTGAGGGAGGCAGTGATCAAGCTCCAGAGGCAGAGTACGAGGAAGTGAAAAAG 459
Query 2187 TGAAGAGATTTCGTAAATTCTTGCCACTTGGGTTTTAAGAGATTAGGTT-AGATCATGGT 2245
||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 460 TGAGGAGATTTGGTAAATTCTTGCCACTTGGGTTTTAAGAGATGAGGTTTAGATCATGGT 519
Query 2246 GGGTTCTATGCCCAAGAAACTTTTGCCTTT-AGAAGAGCCAGCAATGGATCTGTTTCTGG 2304
|||||||||| ||||| ||||||||||||| |||| | | |||| ||||| |||||||||
Sbjct 520 GGGTTCTATGTCCAAGGAACTTTTGCCTTTTAGAACAACGAGCAGTGGATATGTTTCTGG 579
Query 2305 AATAAGCTTTTGTCAGGGAACTGAACTTAATGTTTCTCTGCTAAAAA-CCTTTGTTATGT 2363
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 580 AATAAGCTTTTGTCAGGGAACTAAACTTAATGTTTCTCTGCTAAAAAACCTTTGTTATGT 639
Query 2364 AATGTGAGATGGTTAAGGAGAAGAAGTTTACAAGATTTTGTCA 2406
||||||| ||||||| |||||||||||| ||| |||||||||
Sbjct 640 AATGTGA--TGGTTAAAGAGAAGAAGTTTTCAAAATTTTGTCA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119477297100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5