BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487775
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09600.1 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 | c... 1371 0.0
AT4G32210.1 | Symbols: SDH3-2 | succinate dehydrogenase 3-2 | c... 1365 0.0
> AT5G09600.1 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 |
chr5:2979144-2980844 FORWARD LENGTH=1035
Length=1035
Score = 1371 bits (742), Expect = 0.0
Identities = 889/957 (93%), Gaps = 22/957 (2%)
Strand=Plus/Plus
Query 39 GCAG-GAAGACTCATCTGATTCAGTCCATGGCTGCCACAGCTCTTTTCCGATCGATTCGC 97
|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 50 GCAGAGAATTCTCATCTGATTCAGTCCATGGCTGCCACGGCTCTTTTCCGATCGATTCGC 109
Query 98 CGACGCGACGTCGTGTCTGCGCCTCTTTCCGTTTACAAATCTCTTGCTGGTAATGCTCAA 157
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 110 CGACGCGACGTCGTCTCCGCGCCTCTTTCCGTTTACAAATCCCTTGCTGGTAATGCTCAA 169
Query 158 CCTTCATGGGGTAGTTCATACACTGGTCAAAACTATGCAAGTTTGTGTAGAGCTTTCGGG 217
||||| |||||||||||||||| |||||| |||||||||||||| | ||||||||||||
Sbjct 170 CCTTCCTGGGGTAGTTCATACATTGGTCAGAACTATGCAAGTTTCTCCAGAGCTTTCGGG 229
Query 218 TCAAAACCTGTTGTGAATGACATTCTTGGTACTGGTTTGGGCACTAATAACGCCATTAGA 277
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 230 TCAAAACCTGTTGTGAATGACATTCTTGGTACTGGTTTGGGCACTAACAATGCCATTAGA 289
Query 278 GTGGAGAGAGAGCAGTCAAAAGCTAATG-AGACTGCAACTGTTGGAGCTCAATTGACTCG 336
| |||||||||| |||||||| ||| || || |||||| |||||| ||||||||||||||
Sbjct 290 GAGGAGAGAGAGAAGTCAAAATCTACTGAAG-CTGCAATTGTTGGTGCTCAATTGACTCG 348
Query 337 ATCTTTCCGTACTCTTGATGAGGCAACATCGAAACGATTGTTCTCTACAATCTCAGGGGA 396
|||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 349 ATCTTTCCGTGCTCTTGATGTGGGAACATCGAAACGATTGTTTTCTACAATCTCAGGGGA 408
Query 397 TATAAAGACAACACATGAGGAACCAAAAATCAAAAGCTTTCGCCCCTTGTCTCCTCACCT 456
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 409 TATAAAGACAACACAGGAGGAACCAAAAATCAAAAGCTTTCGCCCTTTATCTCCTCACCT 468
Query 457 TACTGTTTACCAGCCTCAGATGAACTCCATGCTATCGATTTTCAATAGAATCTCAGGGGT 516
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 469 TTCTGTTTACCAGCCTCAGATGAACTCCATGCTATCGATTTTCAACAGAATCTCAGGGGT 528
Query 517 CTACTTGACCGGAGTCACTTTCGCCGGCTACCTTCTCTACCTGAAAATGGGTATGATTTG 576
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 529 TTACTTGACCGGTGTCACTTTCGCTGGCTACCTTCTCTACCTGAAGATGGGTATGATCTG 588
Query 577 CCTCACCTACCCGAGTTTCTACCAAGTCCTTTACCATACACAACAGCAACTTCCAGTCAT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CCTCACCTACCCGAGTTTCTACCAAGTCCTTTACCATACACAACAGCAACTTCCAGTCAT 648
Query 637 CACCTCGGTTACTGCATTAGCCGCAATTTACCATACTATCAAGAGTACTCACTCACTCTT 696
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 649 CACCTCGGTTACTGCATTAGCCGCTATTTATCATACTATCAAGAGTACTCACTCACTCTT 708
Query 697 GACCCATTAAAAACCTTTCCCAAAGCTCTTTCGATGAAGCCGCCAAAGTCTCCAGTAAGA 756
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GACCCATTAAAAACCTTTACCAAAGCTCTTTCGATGAAGCCGCCAAAGTCTCCAGTAAGA 768
Query 757 GTTTCTTTGAGATGATTAATAAGGAGGCAAGAAA-CATTTGTCAAACTCTGTCTTGAAAA 815
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 769 GTTTCTTTGAGATGATTAATAAGGAGACAAGAAAACATTTGTTAAACTCTGTCTTGAAAA 828
Query 816 GCTAAAGATTTAACACCTGTTT-TTTGGATTCGAGGCT-----------ATGTTTGTTGC 863
| |||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 829 GGTAAAGATTTAGCACCTGTTTCTTTGGATTCGAGGCTTTTTTGGGGGTATGTTTGTTGC 888
Query 864 TTTTCTTTGTTCCCAGACCTTTTT-GAATGATGTAATAAATGTTTACCAATGTTCTGTTG 922
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 889 TTTTCTTTGTTCTCAGACCTTTTTTGAATGATGTAATAAATGTTTACCAAAGTTCTGTTG 948
Query 923 CTACGTTACTCTTTT-GCAACAACttttttttCTTCATGAAATTTGTCAACTTTAAT 978
||||||||||||||| || |||| |||| ||||||||||||||||||||| |||
Sbjct 949 CTACGTTACTCTTTTTGCTACAAGTTTT----CTTCATGAAATTTGTCAACTTCAAT 1001
> AT4G32210.1 | Symbols: SDH3-2 | succinate dehydrogenase 3-2 |
chr4:15556415-15558125 REVERSE LENGTH=1043
Length=1043
Score = 1365 bits (739), Expect = 0.0
Identities = 888/957 (93%), Gaps = 22/957 (2%)
Strand=Plus/Plus
Query 39 GCAG-GAAGACTCATCTGATTCAGTCCATGGCTGCCACAGCTCTTTTCCGATCGATTCGC 97
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 58 GCAGAGAATTCTCATCTGATTCAGTCCATGGCTGCCACGGCTCTTTTCCGATCGATTCGT 117
Query 98 CGACGCGACGTCGTGTCTGCGCCTCTTTCCGTTTACAAATCTCTTGCTGGTAATGCTCAA 157
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 118 CGACGCGACGTCGTCTCCGCGCCTCTTTCCGTTTACAAATCCCTTGCTGGTAATGCTCAA 177
Query 158 CCTTCATGGGGTAGTTCATACACTGGTCAAAACTATGCAAGTTTGTGTAGAGCTTTCGGG 217
||||| |||||||||||||||| |||||| |||||||||||||| | ||||||||||||
Sbjct 178 CCTTCCTGGGGTAGTTCATACATTGGTCAGAACTATGCAAGTTTCTCCAGAGCTTTCGGG 237
Query 218 TCAAAACCTGTTGTGAATGACATTCTTGGTACTGGTTTGGGCACTAATAACGCCATTAGA 277
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 238 TCAAAACCTGTTGTGAATGACATTCTTGGTACTGGTTTGGGCACTAACAATGCCATTAGA 297
Query 278 GTGGAGAGAGAGCAGTCAAAAGCTAATG-AGACTGCAACTGTTGGAGCTCAATTGACTCG 336
| |||||||||| |||||||| ||| || || |||||| |||||| ||||||||||||||
Sbjct 298 GAGGAGAGAGAGAAGTCAAAATCTACTGAAG-CTGCAATTGTTGGTGCTCAATTGACTCG 356
Query 337 ATCTTTCCGTACTCTTGATGAGGCAACATCGAAACGATTGTTCTCTACAATCTCAGGGGA 396
|||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 357 ATCTTTCCGTGCTCTTGATGTGGGAACATCGAAACGATTGTTTTCTACAATCTCAGGGGA 416
Query 397 TATAAAGACAACACATGAGGAACCAAAAATCAAAAGCTTTCGCCCCTTGTCTCCTCACCT 456
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 417 TATAAAGACAACACAGGAGGAACCAAAAATCAAAAGCTTTCGCCCTTTATCTCCTCACCT 476
Query 457 TACTGTTTACCAGCCTCAGATGAACTCCATGCTATCGATTTTCAATAGAATCTCAGGGGT 516
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TTCTGTTTACCAGCCTCAGATGAACTCCATGCTATCGATTTTCAACAGAATCTCAGGGGT 536
Query 517 CTACTTGACCGGAGTCACTTTCGCCGGCTACCTTCTCTACCTGAAAATGGGTATGATTTG 576
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 537 TTACTTGACCGGTGTCACTTTCGCTGGCTACCTTCTCTACCTGAAGATGGGTATGATCTG 596
Query 577 CCTCACCTACCCGAGTTTCTACCAAGTCCTTTACCATACACAACAGCAACTTCCAGTCAT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCTCACCTACCCGAGTTTCTACCAAGTCCTTTACCATACACAACAGCAACTTCCAGTCAT 656
Query 637 CACCTCGGTTACTGCATTAGCCGCAATTTACCATACTATCAAGAGTACTCACTCACTCTT 696
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 657 CACCTCGGTTACTGCATTAGCCGCTATTTATCATACTATCAAGAGTACTCACTCACTCTT 716
Query 697 GACCCATTAAAAACCTTTCCCAAAGCTCTTTCGATGAAGCCGCCAAAGTCTCCAGTAAGA 756
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GACCCATTAAAAACCTTTACCAAAGCTCTTTCGATGAAGCCGCCAAAGTCTCCAGTAAGA 776
Query 757 GTTTCTTTGAGATGATTAATAAGGAGGCAAGAAA-CATTTGTCAAACTCTGTCTTGAAAA 815
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 777 GTTTCTTTGAGATGATTAATAAGGAGACAAGAAAACATTTGTTAAACTCTGTCTTGAAAA 836
Query 816 GCTAAAGATTTAACACCTGTTT-TTTGGATTCGAGGCT-----------ATGTTTGTTGC 863
| |||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 837 GGTAAAGATTTAGCACCTGTTTCTTTGGATTCGAGGCTTTTTTGGGGGTATGTTTGTTGC 896
Query 864 TTTTCTTTGTTCCCAGACCTTTTT-GAATGATGTAATAAATGTTTACCAATGTTCTGTTG 922
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 897 TTTTCTTTGTTCTCAGACCTTTTTTGAATGATGTAATAAATGTTTACCAAAGTTCTGTTG 956
Query 923 CTACGTTACTCTTTT-GCAACAACttttttttCTTCATGAAATTTGTCAACTTTAAT 978
||||||||||||||| || |||| |||| ||||||||||||||||||||| |||
Sbjct 957 CTACGTTACTCTTTTTGCTACAAGTTTT----CTTCATGAAATTTGTCAACTTCAAT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5